|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
11-333 |
1.76e-95 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 286.62 E-value: 1.76e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 11 LLQARTFIALLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTV-GI 89
Cdd:COG1172 16 LPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 90 PLWEGnrlflnifevIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTYPNLvgmealgNTGFA 169
Cdd:COG1172 96 PILLA----------ILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGL-------PDAFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 170 VLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQL 249
Cdd:COG1172 159 ALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 250 QTAHPMTGNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQR 329
Cdd:COG1172 239 GSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
....
gi 644357752 330 LQSK 333
Cdd:COG1172 319 RRAR 322
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
10-328 |
4.29e-81 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 250.02 E-value: 4.29e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 10 YLLQARTFIALLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGI 89
Cdd:PRK09512 15 WLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 90 PlwegnrlflnIFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKtyPNLVGMEALGNTgFA 169
Cdd:PRK09512 95 N----------ALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGS--PINTGFTDNADL-FG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 170 VLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQL 249
Cdd:PRK09512 162 WFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644357752 250 QTAHPMTGNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQ 328
Cdd:PRK09512 242 SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
47-324 |
1.77e-76 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 236.15 E-value: 1.77e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 47 VAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIplwegnrlfLNIFEVIGAVALLGVLLGLINGTLITRL 126
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAG---------LPIPLAILAALAVGALIGLLNGLLVAYL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 127 GVAPFICTLGAMYVARGAALLTADGKTYPNLvgmealGNTGFAVLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYI 206
Cdd:cd06579 72 RIPPFIVTLGTMFILRGLALLITGGRPISGL------PPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 207 YAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMTGNMFEMDAIGATVLGGTALSGGRGRVFGSI 286
Cdd:cd06579 146 YAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTL 225
|
250 260 270
....*....|....*....|....*....|....*...
gi 644357752 287 IGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVID 324
Cdd:cd06579 226 LGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
17-329 |
1.16e-49 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 170.33 E-value: 1.16e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 17 FIALLLVVLFFSSMVPNFL----TVSNLLIMTQHVAItglLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTvgiplw 92
Cdd:NF040906 8 LIALVAIVVLFQILTGGILlrplNVTNLILQNSYILI---LAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMV------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 93 egnRLFLNIFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKT---------------YPNL 157
Cdd:NF040906 79 ---NWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSigpfpdgfqkissgfLPDL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 158 VGMEALGNT--------------------------GFAVLGSGTFL---------------------GIYNPIWLMLAIV 190
Cdd:NF040906 156 FGGTGLHLLtlllgvlaaaalvwsqlrgrrrrikyGLEVEPMALFIaklvliaaailfftyllasyrGLPNVLIILGVLI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 191 LLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMTGNMFEMDAIGATVL 270
Cdd:NF040906 236 LVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFI 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 644357752 271 GGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQR 329
Cdd:NF040906 316 GGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKR 374
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-321 |
2.14e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 97.71 E-value: 2.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 47 VAITGLLAVGMTLVI-LTGGIDLSVGAVAGLCGMIAGALLTVGIPlwegnrlflNIFEVIGAVALLGVLLGLINGTLITR 125
Cdd:pfam02653 9 ASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGP---------GLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 126 LGVAPFICTLGAMYVARGAALLTADGKTYPNLVGMEALGNTGFAVLGSGTFLGIYNPIWLMLAIVLLgiYLTKKTPLGRY 205
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALW--LLLYRTKFGRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 206 IYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPM-TGNMFEMDAIGATVLGGTalsggrGRVFG 284
Cdd:pfam02653 158 LRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIG 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 644357752 285 SIIGAFVIVFLAD-GLVMMGVSEFWQMVIKGLVIVTAV 321
Cdd:pfam02653 232 VVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
11-333 |
1.76e-95 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 286.62 E-value: 1.76e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 11 LLQARTFIALLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTV-GI 89
Cdd:COG1172 16 LPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 90 PLWEGnrlflnifevIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTYPNLvgmealgNTGFA 169
Cdd:COG1172 96 PILLA----------ILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGL-------PDAFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 170 VLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQL 249
Cdd:COG1172 159 ALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 250 QTAHPMTGNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQR 329
Cdd:COG1172 239 GSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
....
gi 644357752 330 LQSK 333
Cdd:COG1172 319 RRAR 322
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
20-329 |
3.16e-82 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 253.31 E-value: 3.16e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 20 LLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIPLWEGnrlfl 99
Cdd:COG4158 36 LILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGLGLLG----- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 100 nifevIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTYPNlvgmealGNTGFAVLGSGTFLGI 179
Cdd:COG4158 111 -----IPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFN-------PDLPFAWIGNGYLLGI 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 180 YNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMT-GN 258
Cdd:COG4158 179 PWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLQlGQ 258
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644357752 259 MFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQR 329
Cdd:COG4158 259 GYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQR 329
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
10-328 |
4.29e-81 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 250.02 E-value: 4.29e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 10 YLLQARTFIALLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGI 89
Cdd:PRK09512 15 WLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 90 PlwegnrlflnIFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKtyPNLVGMEALGNTgFA 169
Cdd:PRK09512 95 N----------ALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGS--PINTGFTDNADL-FG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 170 VLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQL 249
Cdd:PRK09512 162 WFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644357752 250 QTAHPMTGNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQ 328
Cdd:PRK09512 242 SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
47-324 |
1.77e-76 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 236.15 E-value: 1.77e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 47 VAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIplwegnrlfLNIFEVIGAVALLGVLLGLINGTLITRL 126
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAG---------LPIPLAILAALAVGALIGLLNGLLVAYL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 127 GVAPFICTLGAMYVARGAALLTADGKTYPNLvgmealGNTGFAVLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYI 206
Cdd:cd06579 72 RIPPFIVTLGTMFILRGLALLITGGRPISGL------PPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 207 YAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMTGNMFEMDAIGATVLGGTALSGGRGRVFGSI 286
Cdd:cd06579 146 YAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTL 225
|
250 260 270
....*....|....*....|....*....|....*...
gi 644357752 287 IGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVID 324
Cdd:cd06579 226 LGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
17-324 |
9.46e-72 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 228.46 E-value: 9.46e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 17 FIALLLVVLFFSSM-VPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTvgiplwegn 95
Cdd:COG4214 28 IIALVVIWIVFQILtGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMV--------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 96 RLFLNIFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTYPNL------------------ 157
Cdd:COG4214 99 NWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFdptfqaigngflpdilgt 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 158 ---------------------------------VGMEALGNTGFAVLGSG------TFLGIYNPIWLMLAIVLLGIYLTK 198
Cdd:COG4214 179 lswvlgavavaayvalqlrsrrrrrryglpvepLWLFVLKLALLAVLILGavyllnSYRGIPIVVLILLVLVVVYTFVLT 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 199 KTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMTGNMFEMDAIGATVLGGTALSGG 278
Cdd:COG4214 259 RTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGG 338
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 644357752 279 RGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVID 324
Cdd:COG4214 339 VGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFD 384
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
17-329 |
1.52e-52 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 176.79 E-value: 1.52e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 17 FIALLLVVLFFssmVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIPLWEGnr 96
Cdd:PRK11285 36 FAVLFIACSLF---VPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLG-- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 97 lflnifevIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTypnlVGMEalgNTGFAVLGSGTF 176
Cdd:PRK11285 111 --------VAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKA----VGIS---DERFFALGYANF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 177 LGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMT 256
Cdd:PRK11285 176 FGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMT 255
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644357752 257 GNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQR 329
Cdd:PRK11285 256 SIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
17-329 |
1.16e-49 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 170.33 E-value: 1.16e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 17 FIALLLVVLFFSSMVPNFL----TVSNLLIMTQHVAItglLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTvgiplw 92
Cdd:NF040906 8 LIALVAIVVLFQILTGGILlrplNVTNLILQNSYILI---LAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMV------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 93 egnRLFLNIFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKT---------------YPNL 157
Cdd:NF040906 79 ---NWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSigpfpdgfqkissgfLPDL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 158 VGMEALGNT--------------------------GFAVLGSGTFL---------------------GIYNPIWLMLAIV 190
Cdd:NF040906 156 FGGTGLHLLtlllgvlaaaalvwsqlrgrrrrikyGLEVEPMALFIaklvliaaailfftyllasyrGLPNVLIILGVLI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 191 LLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMTGNMFEMDAIGATVL 270
Cdd:NF040906 236 LVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFI 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 644357752 271 GGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQFQQR 329
Cdd:NF040906 316 GGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKR 374
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
16-326 |
3.25e-47 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 162.25 E-value: 3.25e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 16 TFIALLLVVLFFSSMVPN-FLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIPlweg 94
Cdd:PRK09699 14 TFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVD---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 95 nrlflNIFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTYPNLvgmealgNTGFAVLGSG 174
Cdd:PRK09699 90 -----PFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGF-------SFDFVNFFAA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 175 TFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHP 254
Cdd:PRK09699 158 SVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644357752 255 MTGNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDQF 326
Cdd:PRK09699 238 LAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
17-344 |
6.22e-43 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 151.81 E-value: 6.22e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 17 FIALLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIPLWEGNR 96
Cdd:PRK15432 14 LLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSLPVACL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 97 LFLNIfevigavallGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTYPNLvgmealgNTGFAVLGSGTF 176
Cdd:PRK15432 94 ATLLL----------GLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGL-------PAELKQLSAPIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 177 LGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMT 256
Cdd:PRK15432 157 LGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 257 GNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVVIDqfqQRLQSKVIL 336
Cdd:PRK15432 237 GTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD---GRLRCALER 313
|
....*...
gi 644357752 337 MQRQEKKA 344
Cdd:PRK15432 314 NLRRQKYA 321
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
3-324 |
1.20e-42 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 150.99 E-value: 1.20e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 3 TKYRLYMYLLQARTFIALLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAG 82
Cdd:PRK09478 5 NKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 83 ALLTVGIPLwegNRLFLN-----IFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLtadgktYPNL 157
Cdd:PRK09478 85 TLLQSMDNA---NKVFPElatmpIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSL------YYDF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 158 VGMEALGN---------TGFAVLGSgtFLGIYNPIWLMLAIVLLGIyLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKM 228
Cdd:PRK09478 156 VGASPISGfdsgfstfaQGFVALGS--FRLSYITFYALIAVAFVWV-LWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 229 FVYAFSGLCAALVGLVIASQLQTAHPMTGNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFW 308
Cdd:PRK09478 233 MIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYW 312
|
330
....*....|....*.
gi 644357752 309 QMVIKGLVIVTAVVID 324
Cdd:PRK09478 313 QYIIKGAIIIFAVALD 328
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
16-291 |
3.55e-38 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 138.55 E-value: 3.55e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 16 TFIALLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTvgiplwegn 95
Cdd:PRK11618 11 TIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIG--------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 96 RLFLNIFEVIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADGKTYPNLVGMEALGNTGFAVLGSG- 174
Cdd:PRK11618 82 DYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPGGGr 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 175 -TFLGIynpiwLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAH 253
Cdd:PRK11618 162 lSAMAL-----IMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGY 236
|
250 260 270
....*....|....*....|....*....|....*...
gi 644357752 254 PMTGNMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFV 291
Cdd:PRK11618 237 ALAAVGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLI 274
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
20-322 |
2.88e-31 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 120.32 E-value: 2.88e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 20 LLLVVLFFSSMVPNFLTVSNLLIMTQHVAITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIPLWEGnrlfl 99
Cdd:PRK15038 15 LVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLA----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 100 nifevIGAVALLGVLLGLINGTLITRLGVAPFICTLGAMYVARGAALLTADgktYPNLVGMEALGN--TGFAVLGSGTFL 177
Cdd:PRK15038 90 -----ILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSG---MAGATGYEGIGGfpMAFTDFANLDVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 178 GIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMTG 257
Cdd:PRK15038 162 GLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLG 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644357752 258 NMFEMDAIGATVLGGTALSGGRGRVFGSIIGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAVV 322
Cdd:PRK15038 242 ASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-321 |
2.14e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 97.71 E-value: 2.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 47 VAITGLLAVGMTLVI-LTGGIDLSVGAVAGLCGMIAGALLTVGIPlwegnrlflNIFEVIGAVALLGVLLGLINGTLITR 125
Cdd:pfam02653 9 ASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGP---------GLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 126 LGVAPFICTLGAMYVARGAALLTADGKTYPNLVGMEALGNTGFAVLGSGTFLGIYNPIWLMLAIVLLgiYLTKKTPLGRY 205
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALW--LLLYRTKFGRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 206 IYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPM-TGNMFEMDAIGATVLGGTalsggrGRVFG 284
Cdd:pfam02653 158 LRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA------GSPIG 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 644357752 285 SIIGAFVIVFLAD-GLVMMGVSEFWQMVIKGLVIVTAV 321
Cdd:pfam02653 232 VVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-321 |
6.64e-19 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 85.02 E-value: 6.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 49 ITGLLAVGMTLVILTGGIDLSVGAVAGLCGMIAGALLTVGIPlwegnrlflNIFEVIGAVALLGVLLGLINGTLITRLGV 128
Cdd:cd06574 3 IYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGY---------NPWLALIAAILAGAAAGLVTGFLHTRLKI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 129 APFICTLGAMYVARGAALLTADGKTYPnlVGMEALGNTGFAVLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYA 208
Cdd:cd06574 74 NGLLAGILIMIGLYSINLRIMGGPNIP--LGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 209 IGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPMTGNMFEMDAIGATVLGGTALSG--GRGRVFGSI 286
Cdd:cd06574 152 TGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVI 231
|
250 260 270
....*....|....*....|....*....|....*
gi 644357752 287 IGAFVIVFLADGLVMMGVSEFWQMVIKGLVIVTAV 321
Cdd:cd06574 232 IGAILYRIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
47-322 |
1.66e-13 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 69.73 E-value: 1.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 47 VAITGLLAVGMTLVI-LTGGIDLSVGAVAGLCGMIAGALLT-VGIPLWEGnrlflnifevIGAVALLGVLLGLINGTLIT 124
Cdd:COG4177 11 ILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTThLGLPFWLA----------LLLAGLVAALLGLLIGLPAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 125 RLGVAPF-ICTLGAMYVARGAALLTADGKTYPN-LVGMEALGNTGFAVLGSGTFLGIynpIWLMLAIVLLGIYLTKKTPL 202
Cdd:COG4177 81 RLRGDYLaIATLAFAEIVRLLALNLESLTGGADgLSGIPRPTLFGLDLGSPLAFYYL---VLALLVLVLLLLRRLVRSRF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 203 GRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASQLQTAHPmtgNMFEMDAIGATVLGgtALSGGRGRV 282
Cdd:COG4177 158 GRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSP---ESFSFLLSIEILLM--VVLGGLGSL 232
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 644357752 283 FGSIIGAFVIVFLADglVMMGVSEFWQMVIkGLVIVTAVV 322
Cdd:COG4177 233 LGPVLGAVLLVLLPE--LLRSLPEYRLLIF-GLLLILVVL 269
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
166-322 |
3.26e-13 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 68.62 E-value: 3.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 166 TGFAVLGSGTFLGIYNPIWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVI 245
Cdd:cd06581 111 PLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALY 190
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644357752 246 ASQLQTAHPmtgNMFEMDAIGATVLGgtALSGGRGRVFGSIIGAFVIVFLADGLvmMGVSEFWQMVIKGLVIVTAVV 322
Cdd:cd06581 191 AHYLGFVSP---ESFGFALSIELLLM--VVLGGLGSLLGPVLGAALLVLLPELL--RSLGPGLRLLVFGLLLILVVL 260
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
48-292 |
1.67e-08 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 54.74 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 48 AITGLLAVGMTLVI-LTGGIDLSVGAVAGLCGMIA-GALLTVGIPLWEGnrlflnifeVIGAVALLGVLLGLINGTLITR 125
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAyTLLVALGLPFWLA---------LLLALLVAALLGVLLERLVLRP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 126 LGVAP---FICTLGAMYVARGAALLTADGKTYPNLVGMEALGNTGFAVLGSGTFLGIynpIWLMLAIVLLGIYLTKKTPL 202
Cdd:cd06582 77 LRGAPlltLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFI---IAVALVLLAALYLFLRRTRL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 203 GRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIASqLQTAHPMTGNMFEMDAIGATVLGGTalsggrGRV 282
Cdd:cd06582 154 GRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVLGGL------GSI 226
|
250
....*....|
gi 644357752 283 FGSIIGAFVI 292
Cdd:cd06582 227 PGAVVGGLLL 236
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
48-292 |
2.81e-08 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 54.30 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 48 AITGLLAVGMTLV-ILTGGIDLSVGAVAGLCGMIAGALLTV-GIPLWEGnrlflnifeVIGAVALLGVLLGLINGTLITR 125
Cdd:COG0559 16 SIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLlGLPLWLA---------LLLAVLVAALLGVLLERLVIRP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 126 L----GVAPFICTLGAMYVARGAALLT--ADGKTYPNLVgmealgnTGFAVLGSGTFLGIYNPIWLMLAIVLLGIYLT-K 198
Cdd:COG0559 87 LrgapPLALLLATIGLSLVLQGLVLLIfgADPRSFPALL-------SGSVELGGVSIPAYRLFIIVVALVLLAALWLFlR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 199 KTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVGLVIAsQLQTAHPMTGNMFEMDAIGATVLGGTalsgg 278
Cdd:COG0559 160 RTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLA-PIYSVSPTMGFLLGLKAFAAVVLGGL----- 233
|
250
....*....|....
gi 644357752 279 rGRVFGSIIGAFVI 292
Cdd:COG0559 234 -GSIPGAVVGGLLL 246
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
183-305 |
3.21e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 44.74 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357752 183 IWLMLAIVLLGIYLTKKTPLGRYIYAIGGNEPAARLSGVPIVKVKMFVYAFSGLCAALVG--LVIASQLQTAHPMTGNMf 260
Cdd:cd06580 98 LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGayLVLGVQGRFTEGMSAGY- 176
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 644357752 261 EMDAIGATVLggtalsgGRGRVFGSIIGAFVIVFLADGLVMMGVS 305
Cdd:cd06580 177 GFIAIAVALL-------GRWNPLGILLAALLFGALEAGGIALQRS 214
|
|
| |
