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Conserved domains on  [gi|644357735|ref|WP_025303024|]
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MULTISPECIES: LapA family protein [Serratia]

Protein Classification

LapA family protein( domain architecture ID 10007969)

LapA family protein similar to Escherichia coli lipopolysaccharide assembly protein A (LapA)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YciS COG3771
Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown];
1-95 4.39e-38

Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown];


:

Pssm-ID: 442985  Cd Length: 96  Bit Score: 122.69  E-value: 4.39e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357735   1 MKYLLIFLLVLVIFVISVTLGAHNDQVVNFNYLVAQGDYRVSTLLATLFGAGFVLGWIICGLFYLRTRIALGRAERKIKR 80
Cdd:COG3771    1 MKYILIFLLVLAIFIIALTLGAQNDQVVTFNYLIAQGEFRLSTLLAILFGAGFILGWLICGLFYLRLKLKLRRLKRKLKR 80

                         90
                 ....*....|....*
gi 644357735  81 LELQLEQPAEPAAQA 95
Cdd:COG3771   81 LEQQLEELRTSPVKD 95
 
Name Accession Description Interval E-value
YciS COG3771
Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown];
1-95 4.39e-38

Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown];


Pssm-ID: 442985  Cd Length: 96  Bit Score: 122.69  E-value: 4.39e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357735   1 MKYLLIFLLVLVIFVISVTLGAHNDQVVNFNYLVAQGDYRVSTLLATLFGAGFVLGWIICGLFYLRTRIALGRAERKIKR 80
Cdd:COG3771    1 MKYILIFLLVLAIFIIALTLGAQNDQVVTFNYLIAQGEFRLSTLLAILFGAGFILGWLICGLFYLRLKLKLRRLKRKLKR 80

                         90
                 ....*....|....*
gi 644357735  81 LELQLEQPAEPAAQA 95
Cdd:COG3771   81 LEQQLEELRTSPVKD 95
LapA_dom pfam06305
Lipopolysaccharide assembly protein A domain; This family includes a domain found in ...
 23-86 6.71e-18

Lipopolysaccharide assembly protein A domain; This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.


Pssm-ID: 428880  Cd Length: 64  Bit Score: 70.62  E-value: 6.71e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644357735   23 HNDQVVNFNYLVAQGDYRVSTLLATLFGAGFVLGWIICGLFYLRTRIALGRAERKIKRLELQLE 86
Cdd:pfam06305   1 QNTQPVTVNFLFAQGELPLSLVLLIAFLIGALLGWLLSLPSYLRLRRELRRLKKELKKLEKELA 64
 
Name Accession Description Interval E-value
YciS COG3771
Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown];
1-95 4.39e-38

Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown];


Pssm-ID: 442985  Cd Length: 96  Bit Score: 122.69  E-value: 4.39e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644357735   1 MKYLLIFLLVLVIFVISVTLGAHNDQVVNFNYLVAQGDYRVSTLLATLFGAGFVLGWIICGLFYLRTRIALGRAERKIKR 80
Cdd:COG3771    1 MKYILIFLLVLAIFIIALTLGAQNDQVVTFNYLIAQGEFRLSTLLAILFGAGFILGWLICGLFYLRLKLKLRRLKRKLKR 80

                         90
                 ....*....|....*
gi 644357735  81 LELQLEQPAEPAAQA 95
Cdd:COG3771   81 LEQQLEELRTSPVKD 95
LapA_dom pfam06305
Lipopolysaccharide assembly protein A domain; This family includes a domain found in ...
 23-86 6.71e-18

Lipopolysaccharide assembly protein A domain; This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.


Pssm-ID: 428880  Cd Length: 64  Bit Score: 70.62  E-value: 6.71e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644357735   23 HNDQVVNFNYLVAQGDYRVSTLLATLFGAGFVLGWIICGLFYLRTRIALGRAERKIKRLELQLE 86
Cdd:pfam06305   1 QNTQPVTVNFLFAQGELPLSLVLLIAFLIGALLGWLLSLPSYLRLRRELRRLKKELKKLEKELA 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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