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Conserved domains on  [gi|639241762|ref|WP_024572055|]
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MULTISPECIES: manganese catalase family protein [Bacillus]

Protein Classification

manganese catalase family protein( domain architecture ID 10523835)

manganese catalase family protein, similar to manganese catalase that performs a peroxide-dependent oxidation-reduction, catalyzing the conversion of hydrogen peroxide to water and molecular oxygen.; belongs to a broad superfamily of ferritin-like diiron-carboxylate proteins

CATH:  1.20.1260.10
EC:  1.11.1.6
Gene Ontology:  GO:0046872|GO:0004096
SCOP:  3001658

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Mn_catalase pfam05067
Manganese containing catalase; Catalases are important antioxidant metalloenzymes that ...
1-268 1.32e-165

Manganese containing catalase; Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.


:

Pssm-ID: 252986 [Multi-domain]  Cd Length: 283  Bit Score: 459.80  E-value: 1.32e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762    1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL 80
Cdd:pfam05067   1 MFVHDKLLQYPVKPDHPDPVLAKKLQEQLGGQFGELSAAMRYLFQGFNTRDKGKYKDLLMDIGTEELGHVEMIATMIARL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762   81 LEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF 160
Cdd:pfam05067  81 LKGATFDQQEDAAEEPVIGSVLGGMNPQHAIVSGLGAMPMDSMGVPWTADYIVASGNLIADLRANIAAEAQARLQYMRLY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  161 EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEESAKQNWLNEKAPDG 240
Cdd:pfam05067 161 EMTDDPGVRDMLSFLLARETVHQNQFYKALEILEEVETIVVPVPFPRKLEKQEVARKLFNFSRGDESTIGRWAKGEAPDG 240
                         250       260
                  ....*....|....*....|....*....
gi 639241762  241 -EAFEYVKEAKTFGEKPELKPAPPYVHNT 268
Cdd:pfam05067 241 gGAFEYVKEPGAGAPIPDLRPAPMISHNT 269
 
Name Accession Description Interval E-value
Mn_catalase pfam05067
Manganese containing catalase; Catalases are important antioxidant metalloenzymes that ...
1-268 1.32e-165

Manganese containing catalase; Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.


Pssm-ID: 252986 [Multi-domain]  Cd Length: 283  Bit Score: 459.80  E-value: 1.32e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762    1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL 80
Cdd:pfam05067   1 MFVHDKLLQYPVKPDHPDPVLAKKLQEQLGGQFGELSAAMRYLFQGFNTRDKGKYKDLLMDIGTEELGHVEMIATMIARL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762   81 LEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF 160
Cdd:pfam05067  81 LKGATFDQQEDAAEEPVIGSVLGGMNPQHAIVSGLGAMPMDSMGVPWTADYIVASGNLIADLRANIAAEAQARLQYMRLY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  161 EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEESAKQNWLNEKAPDG 240
Cdd:pfam05067 161 EMTDDPGVRDMLSFLLARETVHQNQFYKALEILEEVETIVVPVPFPRKLEKQEVARKLFNFSRGDESTIGRWAKGEAPDG 240
                         250       260
                  ....*....|....*....|....*....
gi 639241762  241 -EAFEYVKEAKTFGEKPELKPAPPYVHNT 268
Cdd:pfam05067 241 gGAFEYVKEPGAGAPIPDLRPAPMISHNT 269
CotJC COG3546
Mn-containing catalase (includes spore coat protein CotJC) [Inorganic ion transport and ...
1-267 6.84e-133

Mn-containing catalase (includes spore coat protein CotJC) [Inorganic ion transport and metabolism];


Pssm-ID: 442767  Cd Length: 253  Bit Score: 375.72  E-value: 6.84e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762   1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNeKYKDLLMDTATEELGHVEMIATMIARL 80
Cdd:COG3546    1 MFYHEKKLQYPVRVDKPDPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRDP-KYKDLLMDIGTEELGHVEMVATTIALL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  81 LEDAPLDQQekaAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF 160
Cdd:COG3546   80 LEGAPPELA---PEDPPLAAIKGGGNPQHFIVHGGGALPVDSNGVPWTAAYVQASGNLVADLLSNIAAEQRARLVYERLY 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762 161 EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEaqegpvvpGTFP--KALEKQEFSHQLINFSEGEESAKQNWlNEKAP 238
Cdd:COG3546  157 EMTDDPGVKDMLGFLLAREIVHQQRFGKALEELQ--------GKFPekKKYEDQEFSYKYFNFSTGDYSDRGPW-NGGPP 227
                        250       260
                 ....*....|....*....|....*....
gi 639241762 239 DGEAFEYVKEAKtfGEKPELkPAPPYVHN 267
Cdd:COG3546  228 PGGEFEYVDGPE--GGPPDL-PEDPEEFA 253
Mn_catalase cd01051
Manganese catalase, ferritin-like diiron-binding domain; Manganese (Mn) catalase is a member ...
1-194 3.94e-88

Manganese catalase, ferritin-like diiron-binding domain; Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenzymes are homohexameric structures; each subunit contains a dimanganese active site. The manganese ions are linked by a mu 1,3-bridging glutamate carboxylate and two mu-bridging solvent oxygens that electronically couple the metal centers. Several members of this CD lack the C-terminal strands that pack against the neighboring catalytic domains as seen in L. plantarum. One such sequence, Bacillus subtilis CotJC, is known to be a component of the inner spore coat that interacts with spore coat protein, CotJA. It has been suggested that CotJC could modulate the degree of Mn SodA-dependent cross-linking of an outer coat component, or the two enzymes could serve to protect specific cellular structures during the developmental process.


Pssm-ID: 153110  Cd Length: 156  Bit Score: 258.66  E-value: 3.94e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762   1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL 80
Cdd:cd01051    1 MFYHVKKLQYPVRVDKPDPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAML 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  81 LEDapldqqekaaedpvigsilggmnphhaivsglgampesSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF 160
Cdd:cd01051   81 LKD--------------------------------------SQGVPWTAAYIQSSGNLVADLRSNIAAESRARLTYERLY 122
                        170       180       190
                 ....*....|....*....|....*....|....
gi 639241762 161 EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELE 194
Cdd:cd01051  123 EMTDDPGVKDTLSFLLVREIVHQNAFGKALESLG 156
 
Name Accession Description Interval E-value
Mn_catalase pfam05067
Manganese containing catalase; Catalases are important antioxidant metalloenzymes that ...
1-268 1.32e-165

Manganese containing catalase; Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.


Pssm-ID: 252986 [Multi-domain]  Cd Length: 283  Bit Score: 459.80  E-value: 1.32e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762    1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL 80
Cdd:pfam05067   1 MFVHDKLLQYPVKPDHPDPVLAKKLQEQLGGQFGELSAAMRYLFQGFNTRDKGKYKDLLMDIGTEELGHVEMIATMIARL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762   81 LEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF 160
Cdd:pfam05067  81 LKGATFDQQEDAAEEPVIGSVLGGMNPQHAIVSGLGAMPMDSMGVPWTADYIVASGNLIADLRANIAAEAQARLQYMRLY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  161 EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEESAKQNWLNEKAPDG 240
Cdd:pfam05067 161 EMTDDPGVRDMLSFLLARETVHQNQFYKALEILEEVETIVVPVPFPRKLEKQEVARKLFNFSRGDESTIGRWAKGEAPDG 240
                         250       260
                  ....*....|....*....|....*....
gi 639241762  241 -EAFEYVKEAKTFGEKPELKPAPPYVHNT 268
Cdd:pfam05067 241 gGAFEYVKEPGAGAPIPDLRPAPMISHNT 269
CotJC COG3546
Mn-containing catalase (includes spore coat protein CotJC) [Inorganic ion transport and ...
1-267 6.84e-133

Mn-containing catalase (includes spore coat protein CotJC) [Inorganic ion transport and metabolism];


Pssm-ID: 442767  Cd Length: 253  Bit Score: 375.72  E-value: 6.84e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762   1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNeKYKDLLMDTATEELGHVEMIATMIARL 80
Cdd:COG3546    1 MFYHEKKLQYPVRVDKPDPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRDP-KYKDLLMDIGTEELGHVEMVATTIALL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  81 LEDAPLDQQekaAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF 160
Cdd:COG3546   80 LEGAPPELA---PEDPPLAAIKGGGNPQHFIVHGGGALPVDSNGVPWTAAYVQASGNLVADLLSNIAAEQRARLVYERLY 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762 161 EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEaqegpvvpGTFP--KALEKQEFSHQLINFSEGEESAKQNWlNEKAP 238
Cdd:COG3546  157 EMTDDPGVKDMLGFLLAREIVHQQRFGKALEELQ--------GKFPekKKYEDQEFSYKYFNFSTGDYSDRGPW-NGGPP 227
                        250       260
                 ....*....|....*....|....*....
gi 639241762 239 DGEAFEYVKEAKtfGEKPELkPAPPYVHN 267
Cdd:COG3546  228 PGGEFEYVDGPE--GGPPDL-PEDPEEFA 253
Mn_catalase cd01051
Manganese catalase, ferritin-like diiron-binding domain; Manganese (Mn) catalase is a member ...
1-194 3.94e-88

Manganese catalase, ferritin-like diiron-binding domain; Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenzymes are homohexameric structures; each subunit contains a dimanganese active site. The manganese ions are linked by a mu 1,3-bridging glutamate carboxylate and two mu-bridging solvent oxygens that electronically couple the metal centers. Several members of this CD lack the C-terminal strands that pack against the neighboring catalytic domains as seen in L. plantarum. One such sequence, Bacillus subtilis CotJC, is known to be a component of the inner spore coat that interacts with spore coat protein, CotJA. It has been suggested that CotJC could modulate the degree of Mn SodA-dependent cross-linking of an outer coat component, or the two enzymes could serve to protect specific cellular structures during the developmental process.


Pssm-ID: 153110  Cd Length: 156  Bit Score: 258.66  E-value: 3.94e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762   1 MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL 80
Cdd:cd01051    1 MFYHVKKLQYPVRVDKPDPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAML 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  81 LEDapldqqekaaedpvigsilggmnphhaivsglgampesSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF 160
Cdd:cd01051   81 LKD--------------------------------------SQGVPWTAAYIQSSGNLVADLRSNIAAESRARLTYERLY 122
                        170       180       190
                 ....*....|....*....|....*....|....
gi 639241762 161 EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELE 194
Cdd:cd01051  123 EMTDDPGVKDTLSFLLVREIVHQNAFGKALESLG 156
Mn_catalase_like cd07908
Manganese catalase-like protein, ferritin-like diiron-binding domain; This uncharacterized ...
11-182 2.44e-08

Manganese catalase-like protein, ferritin-like diiron-binding domain; This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).


Pssm-ID: 153117  Cd Length: 154  Bit Score: 51.89  E-value: 2.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  11 PAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWntRGNEKYK---DLLMDTATEELGHVEMIATMIarlledapld 87
Cdd:cd07908    4 PIKVAGPNPRYAELLLDDYAGTNSELTAISQYIYQHL--ISEEKYPeiaETFLGIAIVEMHHLEILGQLI---------- 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 639241762  88 qqekaaedpvigSILGGmNPHHAIVSglgampeSSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLFEMTDDKG 167
Cdd:cd07908   72 ------------VLLGG-DPRYRSSS-------SDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIKDPY 131
                        170
                 ....*....|....*
gi 639241762 168 VKDMLSFLLARDTMH 182
Cdd:cd07908  132 IRALLNRIILDEKLH 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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