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Conserved domains on  [gi|636786964|ref|WP_024323155|]
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PepSY domain-containing protein [Rhizobium ruizarguesonis]

Protein Classification

PepSY domain-containing protein( domain architecture ID 10009460)

PepSY (peptidase (M4) and YpeB of Bacillus subtilis) domain-containing protein contains transmembrane helices, similar to Pseudomonas protegens FetB

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5591 COG5591
Uncharacterized conserved protein [Function unknown];
22-85 5.92e-34

Uncharacterized conserved protein [Function unknown];


:

Pssm-ID: 444330  Cd Length: 88  Bit Score: 111.57  E-value: 5.92e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636786964 22 SPSCTKEPQSKWMSEDAMKAKIDQMGYKVRTFEITGNCYEIYGKDKAGNRAEVYFNPVSGDIVQ 85
Cdd:COG5591  23 DDDCTNVPKAEWQPREALKQKLEAQGYTVKKFKVDDGCYEIYGTDKDGKKVEAYFDPATLEVVK 86
 
Name Accession Description Interval E-value
COG5591 COG5591
Uncharacterized conserved protein [Function unknown];
22-85 5.92e-34

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 444330  Cd Length: 88  Bit Score: 111.57  E-value: 5.92e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636786964 22 SPSCTKEPQSKWMSEDAMKAKIDQMGYKVRTFEITGNCYEIYGKDKAGNRAEVYFNPVSGDIVQ 85
Cdd:COG5591  23 DDDCTNVPKAEWQPREALKQKLEAQGYTVKKFKVDDGCYEIYGTDKDGKKVEAYFDPATLEVVK 86
PepSY_2 pfam13670
Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory ...
 23-84 1.98e-24

Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase _ Bacillus subtilis YPEB.


Pssm-ID: 433394  Cd Length: 83  Bit Score: 87.36  E-value: 1.98e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636786964  23 PSCTKEPQSKWMSEDAMKAKIDQMGYKVRTFEIT-GNCYEIYGKDKAGNRAEVYFNPVSGDIV 84
Cdd:pfam13670 18 PDCCDVPPSDWQPREALVQKLEEQGYKVKKIKVDdGNCYEIYGVDKDGKKVEIYVDPKTGEVV 80
 
Name Accession Description Interval E-value
COG5591 COG5591
Uncharacterized conserved protein [Function unknown];
22-85 5.92e-34

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 444330  Cd Length: 88  Bit Score: 111.57  E-value: 5.92e-34
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636786964 22 SPSCTKEPQSKWMSEDAMKAKIDQMGYKVRTFEITGNCYEIYGKDKAGNRAEVYFNPVSGDIVQ 85
Cdd:COG5591  23 DDDCTNVPKAEWQPREALKQKLEAQGYTVKKFKVDDGCYEIYGTDKDGKKVEAYFDPATLEVVK 86
PepSY_2 pfam13670
Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory ...
 23-84 1.98e-24

Peptidase propeptide and YPEB domain; This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase _ Bacillus subtilis YPEB.


Pssm-ID: 433394  Cd Length: 83  Bit Score: 87.36  E-value: 1.98e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636786964  23 PSCTKEPQSKWMSEDAMKAKIDQMGYKVRTFEIT-GNCYEIYGKDKAGNRAEVYFNPVSGDIV 84
Cdd:pfam13670 18 PDCCDVPPSDWQPREALVQKLEEQGYKVKKIKVDdGNCYEIYGVDKDGKKVEIYVDPKTGEVV 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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