|
Name |
Accession |
Description |
Interval |
E-value |
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
8-566 |
0e+00 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 859.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAITLNGKDVLAL 87
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPAAHPSGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 88 PEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFDEYPHQFSGGM 167
Cdd:COG4172 82 SERELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAYPHQLSGGQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTT 247
Cdd:COG4172 162 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 248 DDIFHRGRHPYTRALLSAVPrlgsmadrkwplrfpvvdtttgeRREPVEVADTvdrrRTPILEVKNLVTRFDIRGGLLGR 327
Cdd:COG4172 242 AELFAAPQHPYTRKLLAAEP-----------------------RGDPRPVPPD----APPLLEARDLKVWFPIKRGLFRR 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 328 KTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVqPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDPFA 407
Cdd:COG4172 295 TVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGLSRRALRPLRRRMQVVFQDPFG 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 408 SLNPRMTVGAAVAEPITEHGLG-SGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESV 486
Cdd:COG4172 374 SLSPRMTVGQIIAEGLRVHGPGlSAAERRARVAEALEEVGLDPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPT 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 487 SALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAVPVPD 566
Cdd:COG4172 454 SALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQHPYTRALLAAAPLLE 533
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
9-606 |
0e+00 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 768.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAITL---NGKDVL 85
Cdd:PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLlrrRSRQVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 ALPE---KEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFDEYPHQ 162
Cdd:PRK10261 89 ELSEqsaAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 163 FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAV 242
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 243 ETGTTDDIFHRGRHPYTRALLSAVPRLGSMADRKWPLRFPVVDTTTGERREPVEVADTVDRRRtPILEVKNLVTRFDIRG 322
Cdd:PRK10261 249 ETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTVVDGE-PILQVRNLVTRFPLRS 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 323 GLLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIF 402
Cdd:PRK10261 328 GLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIF 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 403 QDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVA 482
Cdd:PRK10261 408 QDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIA 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 483 DESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAV 562
Cdd:PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAV 567
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 636784243 563 PVPDPSRRGIKRNLGTDELKSPVRPVGYVAPPSRYREVTAGHLV 606
Cdd:PRK10261 568 PVADPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYV 611
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
10-568 |
0e+00 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 734.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFlvDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsRIDGAITLNGKDVLALPE 89
Cdd:COG1123 2 TPLLEVRDLSVRY--PGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGG-RISGEVLLDGRDLLELSE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 kemrRVRGNDAAMIFQEPMTSLNPIfTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQ 169
Cdd:COG1123 79 ----ALRGRRIGMVFQDPMTQLNPV-TVGDQIAEALENLG-LSRAEARARVLELLEAVGL---ERRLDRYPHQLSGGQRQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDD 249
Cdd:COG1123 150 RVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 250 IFHRGRhpytraLLSAVPRLGSMADRkwplrfpvvdtttgerrepvevADTVDRRRTPILEVKNLVTRFDIRGGllgrkt 329
Cdd:COG1123 230 ILAAPQ------ALAAVPRLGAARGR----------------------AAPAAAAAEPLLEVRNLSKRYPVRGK------ 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDPFASL 409
Cdd:COG1123 276 GGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRELRRRVQMVFQDPYSSL 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:COG1123 356 NPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSAL 435
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAVPVPDPS 568
Cdd:COG1123 436 DVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQHPYTRALLAAVPSLDPA 514
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
8-560 |
0e+00 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 557.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL-AKGSSRIDGAITLNGKDVLA 86
Cdd:PRK15134 1 MTQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLpSPPVVYPSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFDEYPHQFSGG 166
Cdd:PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 167 MRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGT 246
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 247 TDDIFHRGRHPYTRALLSAvprlgsmadrkwplrfpvvdtttgerrEPVEVADTVDRRRTPILEVKNLVTRFDIRGGLLG 326
Cdd:PRK15134 241 AATLFSAPTHPYTQKLLNS---------------------------EPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILK 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 327 RKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNgGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDPF 406
Cdd:PRK15134 294 RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 407 ASLNPRMTVGAAVAEPITEHGLG-SGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADES 485
Cdd:PRK15134 373 SSLNPRLNVLQIIEEGLRVHQPTlSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEP 452
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMA 560
Cdd:PRK15134 453 TSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLA 527
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
305-587 |
1.38e-170 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 488.09 E-value: 1.38e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLVTRFDIRGGLLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVL 384
Cdd:COG4608 4 AEPLLEVRDLKKHFPVRGGLFGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDIT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLDAVSLRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQR 464
Cdd:COG4608 84 GLSGRELRPLRRRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRPEHADRYPHEFSGGQR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 544
Cdd:COG4608 164 QRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRD 243
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 636784243 545 ELFSNPQHAYTKKLMAAVPVPDPSRRGiKRNLGTDELKSPVRP 587
Cdd:COG4608 244 ELYARPLHPYTQALLSAVPVPDPERRR-ERIVLEGDVPSPLNP 285
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
12-275 |
3.07e-158 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 456.05 E-value: 3.07e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsRIDGAITLNGKDVLALPEKE 91
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPG-ITSGEILFDGEDLLKLSEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRV 171
Cdd:COG0444 80 LRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQRV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:COG0444 160 MIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELF 239
|
250 260
....*....|....*....|....
gi 636784243 252 HRGRHPYTRALLSAVPRLGSMADR 275
Cdd:COG0444 240 ENPRHPYTRALLSSIPRLDPDGRR 263
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
308-570 |
1.60e-142 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 415.99 E-value: 1.60e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDIRGGllgrktgAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNG---GSVSLDGYDVL 384
Cdd:COG0444 1 LLEVRNLKVYFPTRRG-------VVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGEDLL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLDAVSLRRMR-RSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKP--DMMKRYPHEFSG 461
Cdd:COG0444 74 KLSEKELRKIRgREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDpeRRLDRYPHELSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 462 GQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:COG0444 154 GMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEG 233
|
250 260
....*....|....*....|....*....
gi 636784243 542 PRAELFSNPQHAYTKKLMAAVPVPDPSRR 570
Cdd:COG0444 234 PVEELFENPRHPYTRALLSSIPRLDPDGR 262
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
304-587 |
2.47e-120 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 359.79 E-value: 2.47e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 304 RRTPILEVKNLVTRFDIRGG--LLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGY 381
Cdd:PRK15079 4 GKKVLLEVADLKVHFDIKDGkqWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 382 DVLSLDAVSLRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPI-TEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFS 460
Cdd:PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLrTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 461 GGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 540
Cdd:PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 636784243 541 GPRAELFSNPQHAYTKKLMAAVPVPDPSrrgIKRN----LGTDELKSPVRP 587
Cdd:PRK15079 244 GTYDEVYHNPLHPYTKALMSAVPIPDPD---LERNktiqLLEGELPSPINP 291
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
306-587 |
7.65e-120 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 358.51 E-value: 7.65e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFDIRGGLLgRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:PRK11308 3 QPLLQAIDLKKHYPVKRGLF-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAVSLRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQ 465
Cdd:PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 466 RICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAE 545
Cdd:PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQ 241
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 636784243 546 LFSNPQHAYTKKLMAAVPVPDPSRRGIKRNLgTDELKSPVRP 587
Cdd:PRK11308 242 IFNNPRHPYTQALLSATPRLNPDDRRERIKL-TGELPSPLNP 282
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
12-245 |
9.80e-116 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 344.10 E-value: 9.80e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKe 91
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS----GSIIFDGKDLLKLSRR- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVrLLEKVRIPNAASRFDEYPHQFSGGMRQRV 171
Cdd:cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-LLLLVGVGLPEEVLNRYPHELSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
308-541 |
1.48e-115 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 343.72 E-value: 1.48e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLD 387
Cdd:cd03257 1 LLEVKNLSVSF-------PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAA-DLLERVGLKPDMMKRYPHEFSGGQRQR 466
Cdd:cd03257 74 RRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVlLLLVGVGLPEEVLNRYPHELSGGQRQR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-269 |
2.11e-113 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 342.09 E-value: 2.11e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 1 MSDVSSASASPVLSVRNLTTAFLV-DGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKgSSRIDGAITL 79
Cdd:PRK09473 1 TVPLAQQQADALLDVKDLRVTFSTpDGD-VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA-NGRIGGSATF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 80 NGKDVLALPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFDEY 159
Cdd:PRK09473 79 NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 160 PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238
|
250 260 270
....*....|....*....|....*....|
gi 636784243 240 EAVETGTTDDIFHRGRHPYTRALLSAVPRL 269
Cdd:PRK09473 239 RTMEYGNARDVFYQPSHPYSIGLLNAVPRL 268
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
6-269 |
2.79e-109 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 338.03 E-value: 2.79e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 6 SASASPVLSVRNLTTAFLVDG-DWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDV 84
Cdd:COG1123 254 AAAAEPLLEVRNLSKRYPVRGkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTS----GSILFDGKDL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 LALPEKEMRRVRGnDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPnaASRFDEYPHQFS 164
Cdd:COG1123 330 TKLSRRSLRELRR-RVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLP--PDLADRYPHELS 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:COG1123 407 GGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVED 486
|
250 260
....*....|....*....|....*
gi 636784243 245 GTTDDIFHRGRHPYTRALLSAVPRL 269
Cdd:COG1123 487 GPTEEVFANPQHPYTRALLAAVPSL 511
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
306-567 |
4.01e-106 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 330.49 E-value: 4.01e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPN----GGSVSLDGY 381
Cdd:COG4172 4 MPLLSVEDLSVAF-------GQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPaahpSGSILFDGQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 382 DVLSLDAVSLRRMR-RSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLkPD---MMKRYPH 457
Cdd:COG4172 77 DLLGLSERELRRIRgNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGI-PDperRLDAYPH 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 458 EFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:COG4172 156 QLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEI 235
|
250 260 270
....*....|....*....|....*....|
gi 636784243 538 VEIGPRAELFSNPQHAYTKKLMAAVPVPDP 567
Cdd:COG4172 236 VEQGPTAELFAAPQHPYTRKLLAAEPRGDP 265
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
6-269 |
9.33e-104 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 317.06 E-value: 9.33e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 6 SASASPVLSVRNLTTAFLVDGDW----KPVVR---DVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAIT 78
Cdd:COG4608 1 AAMAEPLLEVRDLKKHFPVRGGLfgrtVGVVKavdGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTS----GEIL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 79 LNGKDVLALPEKEMRRVRgNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRI-PNAASRfd 157
Cdd:COG4608 77 FDGQDITGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLrPEHADR-- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 158 eYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMY 237
Cdd:COG4608 154 -YPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMY 232
|
250 260 270
....*....|....*....|....*....|..
gi 636784243 238 RGEAVETGTTDDIFHRGRHPYTRALLSAVPRL 269
Cdd:COG4608 233 LGKIVEIAPRDELYARPLHPYTQALLSAVPVP 264
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
309-563 |
2.02e-103 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 313.28 E-value: 2.02e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDA 388
Cdd:COG1124 2 LEVRNLSVSY-------GQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPV---TR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGsgaQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRIC 468
Cdd:COG1124 72 RRRKAFRRRVQMVFQDPYASLHPRHTVDRILAEPLRIHGLP---DREERIAELLEQVGLPPSFLDRYPHQLSGGQRQRVA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFS 548
Cdd:COG1124 149 IARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228
|
250
....*....|....*
gi 636784243 549 NPQHAYTKKLMAAVP 563
Cdd:COG1124 229 GPKHPYTRELLAASL 243
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
12-267 |
1.08e-99 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 306.67 E-value: 1.08e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDWKPVVRDV---SFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAITLNGKDVLALP 88
Cdd:PRK11022 3 LLNVDKLSVHF---GDESAPFRAVdriSYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMR 168
Cdd:PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTD 248
Cdd:PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAH 239
|
250
....*....|....*....
gi 636784243 249 DIFHRGRHPYTRALLSAVP 267
Cdd:PRK11022 240 DIFRAPRHPYTQALLRALP 258
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
7-269 |
1.52e-94 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 300.06 E-value: 1.52e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 7 ASASPVLSVRNLTTAFLVDGDW--KPV-----VRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGssridGAITL 79
Cdd:COG4172 270 PDAPPLLEARDLKVWFPIKRGLfrRTVghvkaVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPSE-----GEIRF 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 80 NGKDVLALPEKEMRRVRgNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETV-RLLEKVRI-PNAASRfd 157
Cdd:COG4172 345 DGQDLDGLSRRALRPLR-RRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGPGLSAAERRARVaEALEEVGLdPAARHR-- 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 158 eYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMY 237
Cdd:COG4172 422 -YPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMK 500
|
250 260 270
....*....|....*....|....*....|..
gi 636784243 238 RGEAVETGTTDDIFHRGRHPYTRALLSAVPRL 269
Cdd:COG4172 501 DGKVVEQGPTEQVFDAPQHPYTRALLAAAPLL 532
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
13-269 |
2.61e-88 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 274.37 E-value: 2.61e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEM 92
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKS-TLLRALAGLERPWS---GEVTFDGRPVTRRRRKAF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPMTSLNPIFTIGRQISEALTCHGdigKAEARAETVRLLEKVRIPnaASRFDEYPHQFSGGMRQRVM 172
Cdd:COG1124 78 RR----RVQMVFQDPYASLHPRHTVDRILAEPLRIHG---LPDREERIAELLEQVGLP--PSFLDRYPHQLSGGQRQRVA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFH 252
Cdd:COG1124 149 IARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228
|
250
....*....|....*..
gi 636784243 253 RGRHPYTRALLSAVPRL 269
Cdd:COG1124 229 GPKHPYTRELLAASLAF 245
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
306-561 |
1.19e-85 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 267.86 E-value: 1.19e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFDIRGGLLGRKTgaIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:COG4167 2 SALLEVRNLSKTFKYRTGLFRRQQ--FEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKLEY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDavslRRMR-RSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQR 464
Cdd:COG4167 80 GD----YKYRcKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNTDLTAEEREERIFATLRLVGLLPEHANFYPHMLSSGQK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 544
Cdd:COG4167 156 QRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTA 235
|
250
....*....|....*..
gi 636784243 545 ELFSNPQHAYTKKLMAA 561
Cdd:COG4167 236 EVFANPQHEVTKRLIES 252
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
32-265 |
6.56e-82 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 256.91 E-value: 6.56e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAITLNGKDVLALpekemrRVRGNDAAMIFQEPMTSL 111
Cdd:TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL------SIRGRHIATIMQNPRTAF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFTIGRQISEALTCHGDIGKaEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTT 191
Cdd:TIGR02770 76 NPLFTMGNHAIETLRSLGKLSK-QARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 192 ALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRHPYTRALLSA 265
Cdd:TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSA 228
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
11-267 |
3.58e-81 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 258.87 E-value: 3.58e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFLVDGD----WKP-----VVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLaKGSsriDGAITLNG 81
Cdd:PRK15079 7 VLLEVADLKVHFDIKDGkqwfWQPpktlkAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KAT---DGEVAWLG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 KDVLALPEKEMRRVRgNDAAMIFQEPMTSLNPIFTIGRQISEAL-TCHGDIGKAEARAETVRLLEKVRI-PNAASRfdeY 159
Cdd:PRK15079 83 KDLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLrTYHPKLSRQEVKDRVKAMMLKVGLlPNLINR---Y 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 160 PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238
|
250 260
....*....|....*....|....*...
gi 636784243 240 EAVETGTTDDIFHRGRHPYTRALLSAVP 267
Cdd:PRK15079 239 HAVELGTYDEVYHNPLHPYTKALMSAVP 266
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
8-276 |
1.72e-77 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 249.11 E-value: 1.72e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFLVD-GDWKP-----VVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNG 81
Cdd:PRK11308 1 SQQPLLQAIDLKKHYPVKrGLFKPerlvkALDGVSFTLERGKTLAVVGESGCGKS----TLARLLTMIETPTGGELYYQG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 KDVLAlPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRI-PNAASRfdeYP 160
Cdd:PRK11308 77 QDLLK-ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLrPEHYDR---YP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 161 HQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232
|
250 260 270
....*....|....*....|....*....|....*.
gi 636784243 241 AVETGTTDDIFHRGRHPYTRALLSAVPRLGSMADRK 276
Cdd:PRK11308 233 CVEKGTKEQIFNNPRHPYTQALLSATPRLNPDDRRE 268
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
11-279 |
8.77e-77 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 247.13 E-value: 8.77e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslsimrLLAKGssrIDGAI-----------TL 79
Cdd:COG4170 2 PLLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKS--------LIAKA---ICGITkdnwhvtadrfRW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 80 NGKDVLALPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGK-----AEARAETVRLLEKVRIPNAAS 154
Cdd:COG4170 71 NGIDLLKLSPRERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIPSWTFKGKwwqrfKWRKKRAIELLHRVGIKDHKD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 155 RFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTI 234
Cdd:COG4170 151 IMNSYPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTIT 230
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 636784243 235 VMYRGEAVETGTTDDIFHRGRHPYTRALLSAVPRLGSMADRKWPL 279
Cdd:COG4170 231 VLYCGQTVESGPTEQILKSPHHPYTKALLRSMPDFRQPLPHKSRL 275
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
308-572 |
1.47e-75 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 241.63 E-value: 1.47e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdiRGGLLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLD 387
Cdd:TIGR02769 2 LLEVRDVTHTY--RTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRI 467
Cdd:TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELF 547
Cdd:TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
250 260
....*....|....*....|....*
gi 636784243 548 SNpQHAYTKKLMAAVPVPDPSRRGI 572
Cdd:TIGR02769 240 SF-KHPAGRNLQSAVLPEHPVRRSI 263
|
|
| PhnK |
COG4107 |
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and ... |
6-266 |
3.32e-75 |
|
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and metabolism];
Pssm-ID: 443283 [Multi-domain] Cd Length: 262 Bit Score: 240.87 E-value: 3.32e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 6 SASASPVLSVRNLTTAFlvdGDWKPVV---RDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNG 81
Cdd:COG4107 2 TNEEQPLLSVRGLSKRY---GPGCGTVvacRDVSFDLYPGEVLGIVGESGSGKS----TLLKCLY-FDLAPTsGSVYYRD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 K-----DVLALPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPnaASRF 156
Cdd:COG4107 74 RdggprDLFALSEAERRRLRRTDWGMVYQNPRDGLRMDVSAGGNIAERLMAAGERHYGDIRARALEWLERVEIP--LERI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 157 DEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVM 236
Cdd:COG4107 152 DDLPRTFSGGMQQRVQIARALVTNPRLLFLDEPTTGLDVSVQARLLDLIRRLQRELGLSMIVVTHDLGVIRLLADRTMVM 231
|
250 260 270
....*....|....*....|....*....|
gi 636784243 237 YRGEAVETGTTDDIFHRGRHPYTRALLSAV 266
Cdd:COG4107 232 KNGRVVESGLTDQVLEDPQHPYTQLLVSSV 261
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
302-563 |
8.59e-71 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 231.54 E-value: 8.59e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 302 DRRRTPILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNG---GSVSL 378
Cdd:PRK09473 6 QQQADALLDVKDLRVTF-------STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGrigGSATF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 379 DGYDVLSLDAVSLRRMR-RSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLkPDMMKR--- 454
Cdd:PRK09473 79 NGREILNLPEKELNKLRaEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-PEARKRmkm 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 455 YPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYL 534
Cdd:PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237
|
250 260
....*....|....*....|....*....
gi 636784243 535 GEIVEIGPRAELFSNPQHAYTKKLMAAVP 563
Cdd:PRK09473 238 GRTMEYGNARDVFYQPSHPYSIGLLNAVP 266
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
308-574 |
2.32e-69 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 228.04 E-value: 2.32e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLD 387
Cdd:COG1135 1 MIELENLSKTF-------PTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDpFASLNPRmTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRI 467
Cdd:COG1135 74 ERELRAARRKIGMIFQH-FNLLSSR-TVAENVALPLEIAGV-PKAEIRKRVAELLELVGLS-DKADAYPSQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELF 547
Cdd:COG1135 150 GIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVF 229
|
250 260
....*....|....*....|....*..
gi 636784243 548 SNPQHAYTKKLMAAVPVPDPSRRGIKR 574
Cdd:COG1135 230 ANPQSELTRRFLPTVLNDELPEELLAR 256
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
306-570 |
3.79e-67 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 219.94 E-value: 3.79e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdiRGGLLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:PRK10419 1 MTLLNVSGLSHHY--AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAVSLRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPItEHGLG-SGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQR 464
Cdd:PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL-RHLLSlDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 544
Cdd:PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237
|
250 260
....*....|....*....|....*...
gi 636784243 545 EL--FSnpqHAYTKKLMAAVPVPDPSRR 570
Cdd:PRK10419 238 DKltFS---SPAGRVLQNAVLPAFPVRR 262
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
328-562 |
1.59e-62 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 210.04 E-value: 1.59e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 328 KTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDpFA 407
Cdd:PRK11153 14 GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQH-FN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 408 SLNPRmTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVS 487
Cdd:PRK11153 93 LLSSR-TVFDNVALPLELAGT-PKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 488 ALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAV 562
Cdd:PRK11153 170 ALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFIQST 244
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
306-567 |
2.17e-62 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 215.34 E-value: 2.17e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllgRKTGAIH-AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRL-----VQPNGGSVSLD 379
Cdd:PRK15134 3 QPLLAIENLSVAF--------RQQQTVRtVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLlpsppVVYPSGDIRFH 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 380 GYDVLSLDAVSLRRMR-RSIQMIFQDPFASLNPRMTVGAAVAEPITEH-GLGSGAqARDKAADLLERVGLK--PDMMKRY 455
Cdd:PRK15134 75 GESLLHASEQTLRGVRgNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHrGMRREA-ARGEILNCLDRVGIRqaAKRLTDY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 456 PHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLG 535
Cdd:PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
250 260 270
....*....|....*....|....*....|..
gi 636784243 536 EIVEIGPRAELFSNPQHAYTKKLMAAVPVPDP 567
Cdd:PRK15134 234 RCVEQNRAATLFSAPTHPYTQKLLNSEPSGDP 265
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
308-563 |
2.84e-62 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 208.83 E-value: 2.84e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNG----GSVSLDGYDV 383
Cdd:PRK11022 3 LLNVDKLSVHF-------GDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGrvmaEKLEFNGQDL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 384 LSLDAVSLRRMRRS-IQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLkPDMMKR---YPHEF 459
Cdd:PRK11022 76 QRISEKERRNLVGAeVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGI-PDPASRldvYPHQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 460 SGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVE 539
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234
|
250 260
....*....|....*....|....
gi 636784243 540 IGPRAELFSNPQHAYTKKLMAAVP 563
Cdd:PRK11022 235 TGKAHDIFRAPRHPYTQALLRALP 258
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
308-551 |
4.09e-62 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 205.51 E-value: 4.09e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLD 387
Cdd:cd03258 1 MIELKNVSKVF-------GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDpFASLNPRmTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRI 467
Cdd:cd03258 74 GKELRKARRRIGMIFQH-FNLLSSR-TVFENVALPLEIAGV-PKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELF 547
Cdd:cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
....
gi 636784243 548 SNPQ 551
Cdd:cd03258 230 ANPQ 233
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
308-561 |
4.08e-60 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 201.17 E-value: 4.08e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDIRGGLLGRKTgaIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvLSLD 387
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGWFRRQT--VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP-LHFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRrsIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRI 467
Cdd:PRK15112 81 DYSYRSQR--IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELF 547
Cdd:PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
250
....*....|....
gi 636784243 548 SNPQHAYTKKLMAA 561
Cdd:PRK15112 239 ASPLHELTKRLIAG 252
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
305-547 |
8.09e-60 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 199.44 E-value: 8.09e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLVTRFdirggllGRKTgaIHavEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVL 384
Cdd:COG1127 2 SEPMIEVRNLTKSF-------GDRV--VL--DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDIT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLDAVSLRRMRRSIQMIFQDP--FASlnprMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLkPDMMKRYPHEFSGG 462
Cdd:COG1127 71 GLSEKELYELRRRIGMLFQGGalFDS----LTVFENVAFPLREHTDLSEAEIRELVLEKLELVGL-PGAADKMPSELSGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 463 QRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGP 542
Cdd:COG1127 146 MRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGT 225
|
....*
gi 636784243 543 RAELF 547
Cdd:COG1127 226 PEELL 230
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
12-265 |
8.68e-60 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 199.93 E-value: 8.68e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTtaflVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAITLNGKDVLAlpeke 91
Cdd:PRK10418 4 QIELRNIA----LQAA-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEalTCHGdIGKAEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRV 171
Cdd:PRK10418 74 -CALRGRKIATIMQNPRSAFNPLHTMHTHARE--TCLA-LGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229
|
250
....*....|....
gi 636784243 252 HRGRHPYTRALLSA 265
Cdd:PRK10418 230 NAPKHAVTRSLVSA 243
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
7-266 |
1.91e-59 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 199.00 E-value: 1.91e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 7 ASASPVLSVRNLTTAFlvdGDWKPVvRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRI-----DGAITlng 81
Cdd:PRK11701 1 MMDQPLLSVRGLTKLY---GPRKGC-RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhyrmrDGQLR--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 kDVLALPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPnaASRFDEYPH 161
Cdd:PRK11701 74 -DLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID--AARIDDLPT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 162 QFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEA 241
Cdd:PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230
|
250 260
....*....|....*....|....*
gi 636784243 242 VETGTTDDIFHRGRHPYTRALLSAV 266
Cdd:PRK11701 231 VESGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
9-546 |
3.53e-59 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 205.64 E-value: 3.53e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAFL-VdgdwkPVVRDVSFDVMPGETVAIVGESGSGKSvTslsIMRLLAkGSSRID-GAITLNGKDVla 86
Cdd:COG1129 1 AEPLLEMRGISKSFGgV-----KALDGVSLELRPGEVHALLGENGAGKS-T---LMKILS-GVYQPDsGEILLDGEPV-- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 lpekEMRRVRgnDA-----AMIFQEPmtSLNP-------IFtIGRQISEAltchGDIGKAEARAETVRLLEKVRIP-NAA 153
Cdd:COG1129 69 ----RFRSPR--DAqaagiAIIHQEL--NLVPnlsvaenIF-LGREPRRG----GLIDWRAMRRRARELLARLGLDiDPD 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 154 SRFDEYphqfSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRT 233
Cdd:COG1129 136 TPVGDL----SVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLK-AQGVAIIYISHRLDEVFEIADRV 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 234 IVMYRGEAVETGTTDDIfhrgrhpyTRALLSAvprlgSMADRKWPLRFPVVDTTTGErrepvevadtvdrrrtPILEVKN 313
Cdd:COG1129 211 TVLRDGRLVGTGPVAEL--------TEDELVR-----LMVGRELEDLFPKRAAAPGE----------------VVLEVEG 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 314 LVTRfdirggllgrktgaiHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlslDAVSLR- 392
Cdd:COG1129 262 LSVG---------------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDG------KPVRIRs 320
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 393 ---RMRRSIQMIFQDpfaslnpRMTVGAAVAEPITE------------HGLGSGAQARDKAADLLERVGLKPDMMKRYPH 457
Cdd:COG1129 321 prdAIRAGIAYVPED-------RKGEGLVLDLSIREnitlasldrlsrGGLLDRRRERALAEEYIKRLRIKTPSPEQPVG 393
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 458 EFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:COG1129 394 NLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRI 472
|
....*....
gi 636784243 538 VEIGPRAEL 546
Cdd:COG1129 473 VGELDREEA 481
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
305-554 |
1.96e-58 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 199.55 E-value: 1.96e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVL 384
Cdd:COG3842 2 AMPALELENVSKRY-----------GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLDAvslrrMRRSIQMIFQDpFAsLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLkPDMMKRYPHEFSGGQR 464
Cdd:COG3842 71 GLPP-----EKRNVGMVFQD-YA-LFPHLTVAENVAFGLRMRGV-PKAEIRARVAELLELVGL-EGLADRYPHQLSGGQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHD----MAvverVSHRVAVMYLGEIVEI 540
Cdd:COG3842 142 QRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDqeeaLA----LADRIAVMNDGRIEQV 217
|
250
....*....|....
gi 636784243 541 GPRAELFSNPQHAY 554
Cdd:COG3842 218 GTPEEIYERPATRF 231
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
12-266 |
9.54e-58 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 194.06 E-value: 9.54e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvTSL-SIMRLLakgssRID-GAITLNGKDVLAlPE 89
Cdd:COG1126 1 MIEIENLHKSF---GD-LEVLKGISLDVEKGEVVVIIGPSGSGKS-TLLrCINLLE-----EPDsGTITVDGEDLTD-SK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEMRRVRGNdAAMIFQepmtSLN--PIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGM 167
Cdd:COG1126 70 KDINKLRRK-VGMVFQ----QFNlfPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGL---ADKADAYPAQLSGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTT 247
Cdd:COG1126 142 QQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLA-KEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPP 220
|
250
....*....|....*....
gi 636784243 248 DDIFHRGRHPYTRALLSAV 266
Cdd:COG1126 221 EEFFENPQHERTRAFLSKV 239
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
308-562 |
2.22e-57 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 192.90 E-value: 2.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlSLD 387
Cdd:COG1126 1 MIEIENLHKSF-----------GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL-TDS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDpFaSLNPRMTVGAAVAE-PITEHGLgSGAQARDKAADLLERVGLkPDMMKRYPHEFSGGQRQR 466
Cdd:COG1126 69 KKDINKLRRKVGMVFQQ-F-NLFPHLTVLENVTLaPIKVKKM-SKAEAEERAMELLERVGL-ADKADAYPAQLSGGQQQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:COG1126 145 VAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEF 223
|
250
....*....|....*.
gi 636784243 547 FSNPQHAYTKKLMAAV 562
Cdd:COG1126 224 FENPQHERTRAFLSKV 239
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
11-271 |
1.20e-56 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 194.25 E-value: 1.20e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLlAKGSSRIDG-AITLNGKDVLALPE 89
Cdd:PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV-TKDNWRVTAdRMRFDDIDLLRLSP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEAR-----AETVRLLEKVRIPNAASRFDEYPHQFS 164
Cdd:PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRfgwrkRRAIELLHRVGIKDHKDAMRSFPYELT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
|
250 260
....*....|....*....|....*..
gi 636784243 245 GTTDDIFHRGRHPYTRALLSAVPRLGS 271
Cdd:PRK15093 241 APSKELVTTPHHPYTQALIRAIPDFGS 267
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
13-548 |
3.50e-56 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 198.10 E-value: 3.50e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSV-------------TSLSIMRLLAKGSS--RID--- 74
Cdd:TIGR03269 1 IEVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVlmhvlrgmdqyepTSGRIIYHVALCEKcgYVErps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 75 ----------GAITLNGKDVLALPEKEMRRVRGNDAAMiFQEPMtSLNPIFTIGRQISEALTCHGDIGKaEARAETVRLL 144
Cdd:TIGR03269 77 kvgepcpvcgGTLEPEEVDFWNLSDKLRRRIRKRIAIM-LQRTF-ALYGDDTVLDNVLEALEEIGYEGK-EAVGRAVDLI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 145 EKVRIPNaasRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMG 224
Cdd:TIGR03269 154 EMVQLSH---RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 225 VVAEIADRTIVMYRGEAVETGTTDDIFHRgrhpytraLLSAVPRLgsmadrkwplrfpvvdtttgERREPVEVADtvdrr 304
Cdd:TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV--------FMEGVSEV--------------------EKECEVEVGE----- 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 rtPILEVKNLVTRFdirgglLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSL----DG 380
Cdd:TIGR03269 278 --PIIKVRNVSKRY------ISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdEW 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 381 YDVLSLDAVSLRRMRRSIQMIFQDpfASLNPRMTVGAAVAEPItehGLGSGAQ-ARDKAADLLERVGLKPD----MMKRY 455
Cdd:TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQE--YDLYPHRTVLDNLTEAI---GLELPDElARMKAVITLKMVGFDEEkaeeILDKY 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 456 PHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLG 535
Cdd:TIGR03269 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDG 504
|
570
....*....|...
gi 636784243 536 EIVEIGPRAELFS 548
Cdd:TIGR03269 505 KIVKIGDPEEIVE 517
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
6-264 |
3.81e-56 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 198.39 E-value: 3.81e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 6 SASASPVLSVRNLTTAFLVDG-------DWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKgssriDGAIT 78
Cdd:PRK15134 269 PEPASPLLDVEQLQVAFPIRKgilkrtvDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-----QGEIW 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 79 LNGKDVLALPEKEMRRVRgNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEAR-AETVRLLEKVRIpNAASRFd 157
Cdd:PRK15134 344 FDGQPLHNLNRRQLLPVR-HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQReQQVIAVMEEVGL-DPETRH- 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 158 EYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMY 237
Cdd:PRK15134 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR 500
|
250 260
....*....|....*....|....*..
gi 636784243 238 RGEAVETGTTDDIFHRGRHPYTRALLS 264
Cdd:PRK15134 501 QGEVVEQGDCERVFAAPQQEYTRQLLA 527
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
327-564 |
6.04e-56 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 190.16 E-value: 6.04e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 327 RKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRR-SIQMIFQDp 405
Cdd:cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRkKISMVFQS- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 406 FAsLNPRMTVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADES 485
Cdd:cd03294 111 FA-LLPHRTVLENVAFGLEVQGVPR-AEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAVPV 564
Cdd:cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGVDR 266
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
10-265 |
2.22e-55 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 188.51 E-value: 2.22e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFLVDGDW-----KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDV 84
Cdd:COG4167 2 SALLEVRNLSKTFKYRTGLfrrqqFEAVKPVSFTLEAGQTLAIIGENGSGKS----TLAKMLAGIIEPTSGEILINGHKL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 lalpEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIgKAEARAETVRL-LEKVRI-PNAAsrfDEYPHQ 162
Cdd:COG4167 78 ----EYGDYKYRCKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNTDL-TAEEREERIFAtLRLVGLlPEHA---NFYPHM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 163 FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAV 242
Cdd:COG4167 150 LSSGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVV 229
|
250 260
....*....|....*....|...
gi 636784243 243 ETGTTDDIFHRGRHPYTRALLSA 265
Cdd:COG4167 230 EYGKTAEVFANPQHEVTKRLIES 252
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
307-563 |
2.94e-55 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 190.50 E-value: 2.94e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFDIrggllgrKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPN----GGSVSLDGYD 382
Cdd:COG4170 2 PLLDIRNLTIEIDT-------PQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGID 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 383 VLSLDAVSLRR-MRRSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSG----AQARDKAA-DLLERVGLK--PDMMKR 454
Cdd:COG4170 75 LLKLSPRERRKiIGREIAMIFQEPSSCLDPSAKIGDQLIEAIPSWTFKGKwwqrFKWRKKRAiELLHRVGIKdhKDIMNS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 455 YPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYL 534
Cdd:COG4170 155 YPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYC 234
|
250 260
....*....|....*....|....*....
gi 636784243 535 GEIVEIGPRAELFSNPQHAYTKKLMAAVP 563
Cdd:COG4170 235 GQTVESGPTEQILKSPHHPYTKALLRSMP 263
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
13-240 |
3.23e-55 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 186.54 E-value: 3.23e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEM 92
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKS-TLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGNDAAMIFQEPmtSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVM 172
Cdd:cd03255 77 AAFRRRHIGFVFQSF--NLLPDLTALENVELPLLLAG-VPKKERRERAEELLERVGLGDRLNH---YPSELSGGQQQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMgVVAEIADRTIVMYRGE 240
Cdd:cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIELRDGK 217
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
8-546 |
1.68e-54 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 193.32 E-value: 1.68e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFlvdGDwkpVV--RDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDV 84
Cdd:COG3845 1 MMPPALELRGITKRF---GG---VVanDDVSLTVRPGEIHALLGENGAGKS----TLMKILY-GLYQPDsGEILIDGKPV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 lalpekemrRVRG-NDA-----AMIFQEPMtsLNPIFT------IGRQISEAltchGDIGKAEARAETVRLLEK--VRIP 150
Cdd:COG3845 70 ---------RIRSpRDAialgiGMVHQHFM--LVPNLTvaenivLGLEPTKG----GRLDRKAARARIRELSERygLDVD 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 151 naasrFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALdvTIQgQILDLIKMLQE--EEGMSVLFITHDMGVVAE 228
Cdd:COG3845 135 -----PDAKVEDLSVGEQQRVEILKALYRGARILILDEPTAVL--TPQ-EADELFEILRRlaAEGKSIIFITHKLREVMA 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 229 IADRTIVMYRGEAVETGTTDDIfhrgrhpyTRALLSavpRLgsMADRKWPLRfpvvdtttgERREPVEVADtvdrrrtPI 308
Cdd:COG3845 207 IADRVTVLRRGKVVGTVDTAET--------SEEELA---EL--MVGREVLLR---------VEKAPAEPGE-------VV 257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRfDIRGGLlgrktgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:COG3845 258 LEVENLSVR-DDRGVP---------ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSP 327
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIqmIFQDPFAS-LNPRMTV------GAAVAEPITEHGLGSGAQARDKAADLLERVGLKP----DMMKRyph 457
Cdd:COG3845 328 RERRRLGVAY--IPEDRLGRgLVPDMSVaenlilGRYRRPPFSRGGFLDRKAIRAFAEELIEEFDVRTpgpdTPARS--- 402
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 458 eFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:COG3845 403 -LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDA-GAAVLLISEDLDEILALSDRIAVMYEGRI 480
|
....*....
gi 636784243 538 VEIGPRAEL 546
Cdd:COG3845 481 VGEVPAAEA 489
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
11-266 |
4.05e-54 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 185.03 E-value: 4.05e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFlvdGDWKPVvRDVSFDVMPGETVAIVGESGSGKSVtslsimrLLAKGSSRI---DGAITLNGKD---- 83
Cdd:TIGR02323 2 PLLQVSGLSKSY---GGGKGC-RDVSFDLYPGEVLGIVGESGSGKST-------LLGCLAGRLapdHGTATYIMRSgael 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 -VLALPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPnaASRFDEYPHQ 162
Cdd:TIGR02323 71 eLYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID--PTRIDDLPRA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 163 FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAV 242
Cdd:TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228
|
250 260
....*....|....*....|....
gi 636784243 243 ETGTTDDIFHRGRHPYTRALLSAV 266
Cdd:TIGR02323 229 ESGLTDQVLDDPQHPYTQLLVSSI 252
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
10-243 |
5.75e-54 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 183.32 E-value: 5.75e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPE 89
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKS-TLLNILGGLDRPTS---GEVLIDGQDISSLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEMRRVRGNDAAMIFQEPmtSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQ 169
Cdd:COG1136 78 RELARLRRRHIGFVFQFF--NLLPELTALENVALPLLLAG-VSRKERRERARELLERVGL---GDRLDHRPSQLSGGQQQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMgVVAEIADRTIVMYRGEAVE 243
Cdd:COG1136 152 RVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDP-ELAARADRVIRLRDGRIVS 224
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
8-263 |
9.57e-54 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 183.26 E-value: 9.57e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLakgssRID-GAITLNGKDVLA 86
Cdd:COG1127 1 MSEPMIEVRNLTKSF---GD-RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLL-----RPDsGEILVDGQDITG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMRRVR---GndaaMIFQEP--MTSLnpifTIGRQISEALTCHGDIGKAEARaETVRL-LEKVRIPNAASRfdeYP 160
Cdd:COG1127 72 LSEKELYELRrriG----MLFQGGalFDSL----TVFENVAFPLREHTDLSEAEIR-ELVLEkLELVGLPGAADK---MP 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 161 HQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:COG1127 140 SELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGK 219
|
250 260
....*....|....*....|...
gi 636784243 241 AVETGTTDDIFHRGrHPYTRALL 263
Cdd:COG1127 220 IIAEGTPEELLASD-DPWVRQFL 241
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
13-268 |
4.28e-53 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 184.90 E-value: 4.28e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEM 92
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKS-TLIRCINLLERPTS---GSVLVDGVDLTALSEREL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGNdAAMIFQEP--MTSLnpifTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQR 170
Cdd:COG1135 78 RAARRK-IGMIFQHFnlLSSR----TVAENVALPLEIAG-VPKAEIRKRVAELLELVGL---SDKADAYPSQLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:COG1135 149 VGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDV 228
|
250
....*....|....*...
gi 636784243 251 FHRGRHPYTRALLSAVPR 268
Cdd:COG1135 229 FANPQSELTRRFLPTVLN 246
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
334-550 |
5.15e-53 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 181.34 E-value: 5.15e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRmrrSIQMIFQDpfASLNPRM 413
Cdd:cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR---KIGYVIQQ--IGLFPHM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKPD-MMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVS 492
Cdd:cd03295 91 TVEENIALVPKLLKWPK-EKIRERADELLALVGLDPAeFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 493 IKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:cd03295 170 TRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
309-541 |
6.16e-53 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 180.41 E-value: 6.16e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03259 1 LELKGLSKTY-----------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VslrrmRRSIQMIFQDPfaSLNPRMTVGAAVAEPITEHGLGSgAQARDKAADLLERVGLkPDMMKRYPHEFSGGQRQRIC 468
Cdd:cd03259 70 E-----RRNIGMVFQDY--ALFPHLTVAENIAFGLKLRGVPK-AEIRARVRELLELVGL-EGLLNRYPHELSGGQQQRVA 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
309-551 |
6.34e-53 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 181.16 E-value: 6.34e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllGRKTgaIHavEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03261 1 IELRGLTKSF-------GGRT--VL--KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDP--FASlnprMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDmMKRYPHEFSGGQRQR 466
Cdd:cd03261 70 AELYRLRRRMGMLFQSGalFDS----LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-EDLYPAELSGGMKKR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
....*..
gi 636784243 547 FS--NPQ 551
Cdd:cd03261 225 RAsdDPL 231
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
307-546 |
1.34e-51 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 177.94 E-value: 1.34e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFDirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL 386
Cdd:COG3638 1 PMLELRNLSKRYP----------GGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTAL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAVSLRRMRRSIQMIFQDPfaSLNPRMTVGAAVAepiteHG-LG--SGAQA---------RDKAADLLERVGLKPDMMKR 454
Cdd:COG3638 71 RGRALRRLRRRIGMIFQQF--NLVPRLSVLTNVL-----AGrLGrtSTWRSllglfppedRERALEALERVGLADKAYQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 455 yPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYL 534
Cdd:COG3638 144 -ADQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRD 222
|
250
....*....|..
gi 636784243 535 GEIVEIGPRAEL 546
Cdd:COG3638 223 GRVVFDGPPAEL 234
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
12-251 |
3.55e-51 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 176.23 E-value: 3.55e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKE 91
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS-TLIRCINGLERPTS---GSVLVDGTDLTLLSGKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGNdAAMIFQE--PMTSLnpifTIGRQISEALTCHGdIGKAEARAETVRLLEKVripNAASRFDEYPHQFSGGMRQ 169
Cdd:cd03258 77 LRKARRR-IGMIFQHfnLLSSR----TVFENVALPLEIAG-VPKAEIEERVLELLELV---GLEDKADAYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDD 249
Cdd:cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
..
gi 636784243 250 IF 251
Cdd:cd03258 228 VF 229
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
309-537 |
4.97e-51 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 175.37 E-value: 4.97e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03255 1 IELKNLSKTY-------GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRR-SIQMIFQDPfaSLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRI 467
Cdd:cd03255 74 KELAAFRRrHIGFVFQSF--NLLPDLTALENVELPLLLAGV-PKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERvSHRVAVMYLGEI 537
Cdd:cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIELRDGKI 218
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
309-532 |
6.12e-50 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 172.27 E-value: 6.12e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslda 388
Cdd:cd03293 1 LEVRNVSKTY-------GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV----- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vslRRMRRSIQMIFQDPfaSLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRIC 468
Cdd:cd03293 69 ---TGPGPDRGYVFQQD--ALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDM--AVveRVSHRVAVM 532
Cdd:cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIdeAV--FLADRVVVL 205
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
13-250 |
7.30e-50 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 172.94 E-value: 7.30e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:COG1131 1 IEVRGLTKRY---GD-KTALDGVSLTVEPGEIFGLLGPNGAGKTTT----IRMLL-GLLRPTsGEVRVLGEDVARDPAEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVrgndaAMIFQEPmtSLNPIFTIGrqisEALTCHGD---IGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMR 168
Cdd:COG1131 72 RRRI-----GYVPQEP--ALYPDLTVR----ENLRFFARlygLPRKEARERIDELLELFGLTDAA---DRKVGTLSGGMK 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTD 248
Cdd:COG1131 138 QRLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELA-AEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPD 216
|
..
gi 636784243 249 DI 250
Cdd:COG1131 217 EL 218
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
306-539 |
7.64e-50 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 172.54 E-value: 7.64e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:COG1136 2 SPLLELRNLTKSY-------GTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAVSLRRMRR-SIQMIFQDPFasLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQR 464
Cdd:COG1136 75 LSERELARLRRrHIGFVFQFFN--LLPELTALENVALPLLLAGV-SRKERRERARELLERVGLG-DRLDHRPSQLSGGQQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVE 539
Cdd:COG1136 151 QRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAAR-ADRVIRLRDGRIVS 224
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
318-546 |
1.17e-49 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 171.98 E-value: 1.17e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 318 FDIRGglLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLV-----QPNGGSVSLDGYDVLSLDaVSLR 392
Cdd:cd03260 1 IELRD--LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIYDLD-VDVL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 393 RMRRSIQMIFQDPfaslNP-RMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKR-YPHEFSGGQRQRICIA 470
Cdd:cd03260 78 ELRRRVGMVFQKP----NPfPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRlHALGLSGGQQQRLCLA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 471 RALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
305-562 |
2.16e-49 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 172.20 E-value: 2.16e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLVTRFdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVl 384
Cdd:COG1116 4 AAPALELRGVSKRF-------PTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPV- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 sldavslRRMRRSIQMIFQDPfaSLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQR 464
Cdd:COG1116 76 -------TGPGPDRGVVFQEP--ALLPWLTVLDNVALGLELRGV-PKAERRERARELLELVGLA-GFEDAYPHQLSGGMR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDM--AVveRVSHRVAVM-----YLGEI 537
Cdd:COG1116 145 QRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVdeAV--FLADRVVVLsarpgRIVEE 222
|
250 260 270
....*....|....*....|....*....|
gi 636784243 538 VEIG---PR-AELFSNPQ-HAYTKKLMAAV 562
Cdd:COG1116 223 IDVDlprPRdRELRTSPEfAALRAEILDLL 252
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
10-266 |
3.93e-49 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 171.79 E-value: 3.93e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNL-----TTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDV 84
Cdd:PRK10419 1 MTLLNVSGLshhyaHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKS----TLARLLVGLESPSQGNVSWRGEPL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 LALPEKEMRRVRGnDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPnaASRFDEYPHQFS 164
Cdd:PRK10419 77 AKLNRAQRKAFRR-DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLD--DSVLDKRPPQLS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
250 260
....*....|....*....|..
gi 636784243 245 GTTDDIFHRgRHPYTRALLSAV 266
Cdd:PRK10419 234 QPVGDKLTF-SSPAGRVLQNAV 254
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
12-266 |
5.79e-49 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 171.53 E-value: 5.79e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNL-----TTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLA 86
Cdd:TIGR02769 2 LLEVRDVthtyrTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKS----TLARLLLGLEKPAQGTVSFRGQDLYQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMRRVRgNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPnaASRFDEYPHQFSGG 166
Cdd:TIGR02769 78 LDRKQRRAFR-RDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR--SEDADKLPRQLSGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 167 MRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGT 246
Cdd:TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECD 234
|
250 260
....*....|....*....|
gi 636784243 247 TDDIFHRgRHPYTRALLSAV 266
Cdd:TIGR02769 235 VAQLLSF-KHPAGRNLQSAV 253
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
13-260 |
6.85e-49 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 169.99 E-value: 6.85e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVtslsIMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:cd03261 1 IELRGLTKSF---GG-RTVLKGVDLDVRRGEILAIIGPSGSGKST----LLRLIV-GLLRPDsGEVLIDGEDISGLSEAE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGNdAAMIFQEP--MTSLnpifTIGRQISEALTCHGDIGKAEARaETVRL-LEKVRIPNAAsrfDEYPHQFSGGMR 168
Cdd:cd03261 72 LYRLRRR-MGMLFQSGalFDSL----TVFENVAFPLREHTRLSEEEIR-EIVLEkLEAVGLRGAE---DLYPAELSGGMK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTD 248
Cdd:cd03261 143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
|
250
....*....|..
gi 636784243 249 DIFHRgRHPYTR 260
Cdd:cd03261 223 ELRAS-DDPLVR 233
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
16-266 |
1.99e-48 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 172.29 E-value: 1.99e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 16 RNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEMRRV 95
Cdd:PRK11153 5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS-TLIRCINLLERPTS---GRVLVDGQDLTALSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 96 RgNDAAMIFQEpmtslnpiF------TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQ 169
Cdd:PRK11153 81 R-RQIGMIFQH--------FnllssrTVFDNVALPLELAG-TPKAEIKARVTELLELVGL---SDKADRYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDD 249
Cdd:PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
250
....*....|....*..
gi 636784243 250 IFHRGRHPYTRALLSAV 266
Cdd:PRK11153 228 VFSHPKHPLTREFIQST 244
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
309-551 |
2.95e-48 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 168.28 E-value: 2.95e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDA 388
Cdd:COG1122 1 IELENLSFSYP----------GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDI---TK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDP----FASlnprmTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQR 464
Cdd:COG1122 68 KNLRELRRKVGLVFQNPddqlFAP-----TVEEDVAFGPENLGL-PREEIRERVEEALELVGLE-HLADRPPHELSGGQK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 544
Cdd:COG1122 141 QRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
|
....*..
gi 636784243 545 ELFSNPQ 551
Cdd:COG1122 220 EVFSDYE 226
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
309-555 |
3.25e-48 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 171.87 E-value: 3.25e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSldA 388
Cdd:COG1118 3 IEVRNISKRF-----------GSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFT--N 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRmrRSIQMIFQDpFAsLNPRMTVGAAVAEPITeHGLGSGAQARDKAADLLERVGLkPDMMKRYPHEFSGGQRQRIC 468
Cdd:COG1118 70 LPPRE--RRVGFVFQH-YA-LFPHMTVAENIAFGLR-VRPPSKAEIRARVEELLELVQL-EGLADRYPSQLSGGQRQRVA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFS 548
Cdd:COG1118 144 LARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYD 223
|
....*..
gi 636784243 549 NPQHAYT 555
Cdd:COG1118 224 RPATPFV 230
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
13-236 |
1.32e-47 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 166.11 E-value: 1.32e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVlalpeke 91
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKS----TLLRIIA-GLERPTsGEVLVDGEPV------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mrRVRGNDAAMIFQEPmtSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRV 171
Cdd:cd03293 69 --TGPGPDRGYVFQQD--ALLPWLTVLDNVALGLELQG-VPKAEARERAEELLELVGLSGFENA---YPHQLSGGMRQRV 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVM 236
Cdd:cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
330-551 |
2.29e-47 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 165.87 E-value: 2.29e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAvslrrMRRSIQMIFQDpFAsL 409
Cdd:cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-----HKRPVNTVFQN-YA-L 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:cd03300 84 FPHLTVFENIAFGLRLKKL-PKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:cd03300 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
7-236 |
4.14e-47 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 166.03 E-value: 4.14e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 7 ASASPVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA---KGSSridGAITLNGKD 83
Cdd:COG1116 2 SAAAPALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKS----TLLRLIAgleKPTS---GEVLVDGKP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 VLALpekemrrvrGNDAAMIFQEPmtSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQF 163
Cdd:COG1116 75 VTGP---------GPDRGVVFQEP--ALLPWLTVLDNVALGLELRG-VPKAERRERARELLELVGLAGFEDA---YPHQL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDV----TIQGQILDlikmLQEEEGMSVLFITHDmgvVAE---IADRTIVM 236
Cdd:COG1116 140 SGGMRQRVAIARALANDPEVLLMDEPFGALDAltreRLQDELLR----LWQETGKTVLFVTHD---VDEavfLADRVVVL 212
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
306-562 |
1.29e-46 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 164.71 E-value: 1.29e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:PRK11701 4 QPLLSVRGLTKLY-----------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAVSL----RR--MRRSIQMIFQDPFASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEF 459
Cdd:PRK11701 73 RDLYALseaeRRrlLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 460 SGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVE 539
Cdd:PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
250 260
....*....|....*....|...
gi 636784243 540 IGPRAELFSNPQHAYTKKLMAAV 562
Cdd:PRK11701 233 SGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
307-556 |
1.44e-46 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 164.82 E-value: 1.44e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRL--VQPNG---GSVSLDGY 381
Cdd:COG1117 10 PKIEVRNLNVYY-----------GDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPGArveGEILLDGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 382 DVLS--LDAVSLRRMrrsIQMIFQDPfaslNP-RMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGL----KpDMMKR 454
Cdd:COG1117 79 DIYDpdVDVVELRRR---VGMVFQKP----NPfPKSIYDNVAYGLRLHGIKSKSELDEIVEESLRKAALwdevK-DRLKK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 455 YPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVSHRVAVMYL 534
Cdd:COG1117 151 SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKK--DYTIVIVTHNMQQAARVSDYTAFFYL 228
|
250 260
....*....|....*....|..
gi 636784243 535 GEIVEIGPRAELFSNPQHAYTK 556
Cdd:COG1117 229 GELVEFGPTEQIFTNPKDKRTE 250
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
309-546 |
3.69e-46 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 162.93 E-value: 3.69e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSlda 388
Cdd:COG1131 1 IEVRGLTKRY-----------GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vSLRRMRRSIQMIFQDPfaSLNPRMTVG------AAVaepiteHGLgSGAQARDKAADLLERVGLkPDMMKRYPHEFSGG 462
Cdd:COG1131 67 -DPAEVRRRIGYVPQEP--ALYPDLTVRenlrffARL------YGL-PRKEARERIDELLELFGL-TDAADRKVGTLSGG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 463 QRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGP 542
Cdd:COG1131 136 MKQRLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGT 214
|
....
gi 636784243 543 RAEL 546
Cdd:COG1131 215 PDEL 218
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
309-546 |
5.48e-46 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 162.35 E-value: 5.48e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03256 1 IEVENLSKTYP----------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDPfaSLNPRMTVGAAVAepiteHG-LGS-----------GAQARDKAADLLERVGLKPDMMKRyP 456
Cdd:cd03256 71 KALRQLRRQIGMIFQQF--NLIERLSVLENVL-----SGrLGRrstwrslfglfPKEEKQRALAALERVGLLDKAYQR-A 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 457 HEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGE 536
Cdd:cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
250
....*....|
gi 636784243 537 IVEIGPRAEL 546
Cdd:cd03256 223 IVFDGPPAEL 232
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
13-253 |
6.45e-46 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 162.12 E-value: 6.45e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA---KGSSridGAITLNGKDVLALPE 89
Cdd:COG1122 1 IELENLSFSY---PGGTPALDDVSLSIEKGEFVAIIGPNGSGKS----TLLRLLNgllKPTS---GEVLVDGKDITKKNL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEMRRvrgnDAAMIFQepmtslNP---IF--TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFS 164
Cdd:COG1122 71 RELRR----KVGLVFQ------NPddqLFapTVEEDVAFGPENLG-LPREEIRERVEEALELVGLEHLA---DRPPHELS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:COG1122 137 GGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLN-KEGKTVIIVTHDLDLVAELADRVIVLDDGRIVAD 215
|
....*....
gi 636784243 245 GTTDDIFHR 253
Cdd:COG1122 216 GTPREVFSD 224
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
9-253 |
1.51e-45 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 164.89 E-value: 1.51e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAkGSSRID-GAITLNGKDVLAL 87
Cdd:COG3842 2 AMPALELENVSKRY---GD-VTALDDVSLSIEPGEFVALLGPSGCGKTTL----LRMIA-GFETPDsGRILLDGRDVTGL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 88 -PEKemRRVrgndaAMIFQEPmtSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGG 166
Cdd:COG3842 73 pPEK--RNV-----GMVFQDY--ALFPHLTVAENVAFGLRMRG-VPKAEIRARVAELLELVGLEGLADR---YPHQLSGG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 167 MRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGT 246
Cdd:COG3842 140 QQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGT 219
|
....*..
gi 636784243 247 TDDIFHR 253
Cdd:COG3842 220 PEEIYER 226
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
14-240 |
1.95e-45 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 159.94 E-value: 1.95e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 14 SVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMR 93
Cdd:cd03225 1 ELKNLS--FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKS----TLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 94 RvrgnDAAMIFQEPMTSL-NPifTIGRQISEALtCHGDIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVM 172
Cdd:cd03225 75 R----KVGLVFQNPDDQFfGP--TVEEEVAFGL-ENLGLPEEEIEERVEEALELVGLEGLR---DRSPFTLSGGQKQRVA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK-AEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
13-257 |
2.75e-45 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 160.54 E-value: 2.75e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKEM 92
Cdd:cd03295 1 IEFENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS----GEIFIDGEDIREQDPVEL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGndaaMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfDEYPHQFSGGMRQRVM 172
Cdd:cd03295 74 RRKIG----YVIQQ--IGLFPHMTVEENIALVPKLLK-WPKEKIRERADELLALVGLDPAEFA-DRYPHELSGGQQQRVG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFh 252
Cdd:cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL- 224
|
....*
gi 636784243 253 rgRHP 257
Cdd:cd03295 225 --RSP 227
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
309-537 |
3.55e-45 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 159.21 E-value: 3.55e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDIRGGLlgrktgaihavEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:COG4619 1 LELEGLSFRVGGKPIL-----------SPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMrrsIQMIFQDPFAslnPRMTVGAAVAEPITEHGLgsgAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRIC 468
Cdd:COG4619 70 PEWRRQ---VAYVPQEPAL---WGGTVRDNLPFPFQLRER---KFDRERALELLERLGLPPDILDKPVERLSGGERQRLA 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:COG4619 141 LIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
13-240 |
3.78e-45 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 159.23 E-value: 3.78e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLAlPEKEM 92
Cdd:cd03262 1 IEIKNLHKSF---GD-FHVLKGIDLTVKKGEVVVIIGPSGSGKS-TLLRCINLLEEPDS---GTIIIDGLKLTD-DKKNI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRgNDAAMIFQEpmTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVM 172
Cdd:cd03262 72 NELR-QKVGMVFQQ--FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA---DAYPAQLSGGQQQRVA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA-EEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
309-537 |
4.36e-45 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 159.23 E-value: 4.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGyDVLSLDA 388
Cdd:cd03262 1 IEIKNLHKSF-----------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG-LKLTDDK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDpFaSLNPRMTVGAAVAE-PITEHGLgSGAQARDKAADLLERVGLkPDMMKRYPHEFSGGQRQRI 467
Cdd:cd03262 69 KNINELRQKVGMVFQQ-F-NLFPHLTVLENITLaPIKVKGM-SKAEAEERALELLEKVGL-ADKADAYPAQLSGGQQQRV 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
12-266 |
1.50e-44 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 159.05 E-value: 1.50e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKE 91
Cdd:COG1120 1 MLEAENLSVGY----GGRPVLDDVSLSLPPGEVTALLGPNGSGKS----TLLRALAGLLKPSSGEVLLDGRDLASLSRRE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRgndaAMIFQEPmtslnpiftigrQISEALTC-----------HGDIGK--AEARAETVRLLEKVRIPNAASRfde 158
Cdd:COG1120 73 LARRI----AYVPQEP------------PAPFGLTVrelvalgryphLGLFGRpsAEDREAVEEALERTGLEHLADR--- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 159 YPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYR 238
Cdd:COG1120 134 PVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKD 213
|
250 260
....*....|....*....|....*...
gi 636784243 239 GEAVETGTTDDIFhrgrhpyTRALLSAV 266
Cdd:COG1120 214 GRIVAQGPPEEVL-------TPELLEEV 234
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
13-245 |
2.23e-44 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 157.30 E-value: 2.23e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:cd03259 1 LELKGLSKTY---GS-VRALDDLSLTVEPGEFLALLGPSGCGKT----TLLRLIA-GLERPDsGEILIDGRDVTGVPPER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mRRVrgndaAMIFQEPmtSLNPIFTIGRQISEALTcHGDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRV 171
Cdd:cd03259 72 -RNI-----GMVFQDY--ALFPHLTVAENIAFGLK-LRGVPKAEIRARVRELLELVGLEGLLNR---YPHELSGGQQQRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
307-569 |
3.43e-44 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 160.35 E-value: 3.43e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFDIRGGllgrktgAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPN----GGSVSLDGYD 382
Cdd:PRK15093 2 PLLDIRNLTIEFKTSDG-------WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNwrvtADRMRFDDID 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 383 VLSLDAVSLRRM-RRSIQMIFQDPFASLNPRMTVGAAVAEPITehglGSGAQAR---------DKAADLLERVGLK--PD 450
Cdd:PRK15093 75 LLRLSPRERRKLvGHNVSMIFQEPQSCLDPSERVGRQLMQNIP----GWTYKGRwwqrfgwrkRRAIELLHRVGIKdhKD 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 451 MMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVA 530
Cdd:PRK15093 151 AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKIN 230
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 636784243 531 VMYLGEIVEIGPRAELFSNPQHAYTKKLMAAVP-----VPDPSR 569
Cdd:PRK15093 231 VLYCGQTVETAPSKELVTTPHHPYTQALIRAIPdfgsaMPHKSR 274
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
309-536 |
8.47e-44 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 154.27 E-value: 8.47e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03229 1 LELKNVSKRY-----------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vSLRRMRRSIQMIFQDPfaSLNPRMTVGAAVAEPItehglgsgaqardkaadllervglkpdmmkryphefSGGQRQRIC 468
Cdd:cd03229 70 -ELPPLRRRIGMVFQDF--ALFPHLTVLENIALGL------------------------------------SGGQQQRVA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGE 536
Cdd:cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
330-545 |
2.98e-43 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 154.44 E-value: 2.98e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDpFaSL 409
Cdd:COG2884 13 GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLRRRIGVVFQD-F-RL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:COG2884 91 LPDRTVYENVALPLRVTGK-SRKEIRRRVREVLDLVGLS-DKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 490 DVSIKAQVCNLLMDLQQsLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAE 545
Cdd:COG2884 169 DPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVRDEARGV 223
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
13-250 |
1.50e-42 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 152.72 E-value: 1.50e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSS-RIDGAITLNGKDVLALPEK- 90
Cdd:cd03260 1 IELRDLNVYY---GD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGaPDEGEVLLDGKDIYDLDVDv 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 -EMRRVRGndaaMIFQEPmtslNPI-FTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRfDEYPHQFSGGMR 168
Cdd:cd03260 77 lELRRRVG----MVFQKP----NPFpGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKD-RLHALGLSGGQQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEegMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTD 248
Cdd:cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225
|
..
gi 636784243 249 DI 250
Cdd:cd03260 226 QI 227
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
11-250 |
2.18e-42 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 152.90 E-value: 2.18e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEK 90
Cdd:COG3638 1 PMLELRNLSKRY---PGGTPALDDVSLEIERGEFVALIGPSGAGKS-TLLRCLNGLVEPTS---GEILVDGQDVTALRGR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVRGnDAAMIFQEPmtSLnpiftIGRQisEALT--CHGDIGK------------AEARAETVRLLEKVRIPN-AASR 155
Cdd:COG3638 74 ALRRLRR-RIGMIFQQF--NL-----VPRL--SVLTnvLAGRLGRtstwrsllglfpPEDRERALEALERVGLADkAYQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 156 FDeyphQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIV 235
Cdd:COG3638 144 AD----QLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIG 219
|
250
....*....|....*
gi 636784243 236 MYRGEAVETGTTDDI 250
Cdd:COG3638 220 LRDGRVVFDGPPAEL 234
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
309-554 |
6.93e-42 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 151.34 E-value: 6.93e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03296 3 IEVRNVSKRF-----------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vslrrMRRSIQMIFQDpfASLNPRMTVGAAVA-----EPITEHGlgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQ 463
Cdd:cd03296 72 -----QERNVGFVFQH--YALFRHMTVFDNVAfglrvKPRSERP--PEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPR 543
Cdd:cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221
|
250
....*....|.
gi 636784243 544 AELFSNPQHAY 554
Cdd:cd03296 222 DEVYDHPASPF 232
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
32-269 |
1.30e-41 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 151.64 E-value: 1.30e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEMRRVRGNDAAMIFQEpmTSL 111
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKS-TLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELRELRRKKISMVFQS--FAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTT 191
Cdd:cd03294 114 LPHRTVLENVAFGLEVQG-VPRAEREERAAEALELVGLEGWE---HKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 192 ALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRHPYTRALLSAVPRL 269
Cdd:cd03294 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFRGVDRA 267
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
13-260 |
1.44e-41 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 153.76 E-value: 1.44e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLA-LPEK 90
Cdd:COG1118 3 IEVRNISKRF---GS-FTLLDDVSLEIASGELVALLGPSGSGKT----TLLRIIA-GLETPDsGRIVLNGRDLFTnLPPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EmRRVrgndaAMIFQEPMtsLNPIFTIGRQISEALTcHGDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQR 170
Cdd:COG1118 74 E-RRV-----GFVFQHYA--LFPHMTVAENIAFGLR-VRPPSKAEIRARVEELLELVQLEGLADR---YPSQLSGGQRQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:COG1118 142 VALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEV 221
|
250
....*....|
gi 636784243 251 FhrgRHPYTR 260
Cdd:COG1118 222 Y---DRPATP 228
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
309-551 |
1.47e-41 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 150.28 E-value: 1.47e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03219 1 LEVRGLTKRF-----------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VslRRMRRSIQMIFQDPfaSLNPRMTV------GAAVAEP---ITEHGLGSGAQARDKAADLLERVGLkPDMMKRYPHEF 459
Cdd:cd03219 70 H--EIARLGIGRTFQIP--RLFPELTVlenvmvAAQARTGsglLLARARREEREARERAEELLERVGL-ADLADRPAGEL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 460 SGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVE 539
Cdd:cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223
|
250
....*....|..
gi 636784243 540 IGPRAELFSNPQ 551
Cdd:cd03219 224 EGTPDEVRNNPR 235
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
309-554 |
1.80e-41 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 153.69 E-value: 1.80e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:COG3839 4 LELENVSKSY-----------GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VslrrmRRSIQMIFQDpFAsLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRIC 468
Cdd:COG3839 73 K-----DRNIAMVFQS-YA-LYPHMTVYENIAFPLKLRKV-PKAEIDRRVREAAELLGLE-DLLDRKPKQLSGGQRQRVA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHD----MAvverVSHRVAVMYLGEIVEIGPRA 544
Cdd:COG3839 144 LGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDqveaMT----LADRIAVMNDGRIQQVGTPE 219
|
250
....*....|
gi 636784243 545 ELFSNPQHAY 554
Cdd:COG3839 220 ELYDRPANLF 229
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
308-550 |
4.30e-41 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 149.09 E-value: 4.30e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSlD 387
Cdd:PRK09493 1 MIEFKNVSKHF-----------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-P 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDpFaSLNPRMTVGAAVA-EPITEHGLGSgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQR 466
Cdd:PRK09493 69 KVDERLIRQEAGMVFQQ-F-YLFPHLTALENVMfGPLRVRGASK-EEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
....
gi 636784243 547 FSNP 550
Cdd:PRK09493 224 IKNP 227
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
335-561 |
4.74e-41 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 149.46 E-value: 4.74e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPN----GGSVSLDGYDVLsldAVSLRRmrRSIQMIFQDPFASLN 410
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGvrqtAGRVLLDGKPVA---PCALRG--RKIATIMQNPRSAFN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 PRMTVGAAVAEPitehGLGSGAQARDKA-ADLLERVGLK--PDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVS 487
Cdd:PRK10418 94 PLHTMHTHARET----CLALGKPADDATlTAALEAVGLEnaARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 488 ALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAA 561
Cdd:PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVSA 243
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
6-248 |
1.18e-40 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 147.58 E-value: 1.18e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 6 SASASPVLSVRNLTTAflVDGDWKPVV--RDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKD 83
Cdd:COG4181 2 SSSSAPIIELRGLTKT--VGTGAGELTilKGISLEVEAGESVAIVGASGSGKS-TLLGLLAGLDRPTS---GTVRLAGQD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 VLALPEKEMRRVRGNDAAMIFQE----P-MTSL-N---PIftigrqisEaLTCHGDigkAEARAEtvRLLEKVRIpnaAS 154
Cdd:COG4181 76 LFALDEDARARLRARHVGFVFQSfqllPtLTALeNvmlPL--------E-LAGRRD---ARARAR--ALLERVGL---GH 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 155 RFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGvVAEIADRTI 234
Cdd:COG4181 139 RLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPA-LAARCDRVL 217
|
250
....*....|....
gi 636784243 235 VMYRGEAVETGTTD 248
Cdd:COG4181 218 RLRAGRLVEDTAAT 231
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
310-532 |
1.90e-40 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 146.46 E-value: 1.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 310 EVKNLVTRFDirggllgrkTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLdav 389
Cdd:cd03225 1 ELKNLSFSYP---------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 390 SLRRMRRSIQMIFQDPFaslnpRMTVGAAVAEPIT---EHGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQR 466
Cdd:cd03225 69 SLKELRRKVGLVFQNPD-----DQFFGPTVEEEVAfglENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQR 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVM 532
Cdd:cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVL 207
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
306-564 |
2.17e-40 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 151.14 E-value: 2.17e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFDirggllgrktgAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:PRK11607 17 TPLLEIRNLTKSFD-----------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAvslrrMRRSIQMIFQDpfASLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQ 465
Cdd:PRK11607 86 VPP-----YQRPINMMFQS--YALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 466 RICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAE 545
Cdd:PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
250
....*....|....*....
gi 636784243 546 LFSNPQHAYTKKLMAAVPV 564
Cdd:PRK11607 237 IYEHPTTRYSAEFIGSVNV 255
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
29-251 |
2.42e-40 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 148.37 E-value: 2.42e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEMRRVRGNdAAMIFQEPM 108
Cdd:TIGR04521 18 KKALDDVSLTIEDGEFVAIIGHTGSGKS-TLIQHLNGLLKPTS---GTVTIDGRDITAKKKKKLKDLRKK-VGLVFQFPE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tslnpiftigRQISEAlTCHGDIG---------KAEARAETVRLLEKVRIPnaASRFDEYPHQFSGGMRQRVMIAMALAS 179
Cdd:TIGR04521 93 ----------HQLFEE-TVYKDIAfgpknlglsEEEAEERVKEALELVGLD--EEYLERSPFELSGGQMRRVAIAGVLAM 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 180 RPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:TIGR04521 160 EPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVF 231
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
309-564 |
1.27e-39 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 149.80 E-value: 1.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFD---------IRGGL----LGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGS 375
Cdd:PRK10070 5 LEIKNLYKIFGehpqrafkyIEQGLskeqILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 376 VSLDGYDVLSLDAVSLRRMRRS-IQMIFQDpFAsLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKR 454
Cdd:PRK10070 85 VLIDGVDIAKISDAELREVRRKkIAMVFQS-FA-LMPHMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLE-NYAHS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 455 YPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYL 534
Cdd:PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240
|
250 260 270
....*....|....*....|....*....|
gi 636784243 535 GEIVEIGPRAELFSNPQHAYTKKLMAAVPV 564
Cdd:PRK10070 241 GEVVQVGTPDEILNNPANDYVRTFFRGVDI 270
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
12-250 |
1.61e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 145.00 E-value: 1.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAkGSSRID-GAITLNGKDVLALPEK 90
Cdd:COG4555 1 MIEVENLSKKY---GK-VPALKDVSFTAKDGEITGLLGPNGAGKTTL----LRMLA-GLLKPDsGSILIDGEDVRKEPRE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVrgndaAMIFQEPMtsLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQR 170
Cdd:COG4555 72 ARRQI-----GVLPDERG--LYDRLTVRENIRYFAELYG-LFDEELKKRIEELIELLGLEEFL---DRRVGELSTGMKKK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMsVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:COG4555 141 VALARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKEGKT-VLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
335-484 |
1.86e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 141.63 E-value: 1.86e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDavsLRRMRRSIQMIFQDPFasLNPRMT 414
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE---RKSLRKEIGYVFQDPQ--LFPRLT 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 415 VGAAVAEPITEHGLGSgAQARDKAADLLERVGLKPDM---MKRYPHEFSGGQRQRICIARALALDPKVIVADE 484
Cdd:pfam00005 76 VRENLRLGLLLKGLSK-REKDARAEEALEKLGLGDLAdrpVGERPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
309-546 |
3.61e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 143.84 E-value: 3.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDa 388
Cdd:COG4555 2 IEVENLSKKY-----------GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEP- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vslRRMRRSIQMIFQDPFasLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKPDMMKRYpHEFSGGQRQRIC 468
Cdd:COG4555 70 ---REARRQIGVLPDERG--LYDRLTVRENIRYFAELYGL-FDEELKKRIEELIELLGLEEFLDRRV-GELSTGMKKKVA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:COG4555 143 LARALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
13-254 |
4.85e-39 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 144.50 E-value: 4.85e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLA--KGSSRIDGAITLNGKDVlalpeK 90
Cdd:TIGR04520 1 IEVENVS--FSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLptSGKVTVDGLDTLDEENL-----W 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVRGndaaMIFQEPMTSLnpiftIGRQISEaltchgDIG-----KAEARAETVRllekvRIPNAASRFD--EY---- 159
Cdd:TIGR04520 74 EIRKKVG----MVFQNPDNQF-----VGATVED------DVAfglenLGVPREEMRK-----RVDEALKLVGmeDFrdre 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 160 PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEiADRTIVMYRG 239
Cdd:TIGR04520 134 PHLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKG 212
|
250
....*....|....*
gi 636784243 240 EAVETGTTDDIFHRG 254
Cdd:TIGR04520 213 KIVAEGTPREIFSQV 227
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
12-239 |
9.55e-39 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 142.11 E-value: 9.55e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlVDGDWK-PVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEK 90
Cdd:TIGR02211 1 LLKCENLGKRY-QEGKLDtRVLKGVSLSIGKGEIVAIVGSSGSGKS-TLLHLLGGLDNPTS---GEVLFNGQSLSKLSSN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVRGNDAAMIFQepMTSLNPIFTIGRQIS-EALTCHGDIGKAEARAEtvRLLEKVRIPNaasRFDEYPHQFSGGMRQ 169
Cdd:TIGR02211 76 ERAKLRNKKLGFIYQ--FHHLLPDFTALENVAmPLLIGKKSVKEAKERAY--EMLEKVGLEH---RINHRPSELSGGERQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGvVAEIADRTIVMYRG 239
Cdd:TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAKKLDRVLEMKDG 217
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
12-265 |
1.08e-38 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 143.39 E-value: 1.08e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDW-----KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDvLA 86
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGWfrrqtVEAVKPLSFTLREGQTLAIIGENGSGKS----TLAKMLAGMIEPTSGELLIDDHP-LH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMR--RVRgndaaMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRI-PNAASRfdeYPHQF 163
Cdd:PRK15112 79 FGDYSYRsqRIR-----MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLlPDHASY---YPHML 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVE 243
Cdd:PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230
|
250 260
....*....|....*....|..
gi 636784243 244 TGTTDDIFHRGRHPYTRALLSA 265
Cdd:PRK15112 231 RGSTADVLASPLHELTKRLIAG 252
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
9-561 |
1.11e-38 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 149.31 E-value: 1.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAFlvdgdwkPVVR---DVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA----KGSsrIDGAITLNG 81
Cdd:PRK13549 2 MEYLLEMKNITKTF-------GGVKaldNVSLKVRAGEIVSLCGENGAGKS----TLMKVLSgvypHGT--YEGEIIFEG 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 KDVLAlpeKEMRRVRGNDAAMIFQE-----PMTSLNPIFtIGRQIsealTCHGDIGKAEARAETVRLLEKVRIP-NAASR 155
Cdd:PRK13549 69 EELQA---SNIRDTERAGIAIIHQElalvkELSVLENIF-LGNEI----TPGGIMDYDAMYLRAQKLLAQLKLDiNPATP 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 156 FDEYphqfSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIV 235
Cdd:PRK13549 141 VGNL----GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLNEVKAISDTICV 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 236 MYRGEAVETG-----TTDDIFHRgrhpytrallsavprlgsMADRKWPLRFPvvdtttgerREPVEVADTvdrrrtpILE 310
Cdd:PRK13549 216 IRDGRHIGTRpaagmTEDDIITM------------------MVGRELTALYP---------REPHTIGEV-------ILE 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 311 VKNlVTRFDIRGGllGRKTgaihaVEDVSFNLFQGETLSLVGESGCGKsttgrsiTRLVQP--------NGGSVSLDGyd 382
Cdd:PRK13549 262 VRN-LTAWDPVNP--HIKR-----VDDVSFSLRRGEILGIAGLVGAGR-------TELVQClfgaypgrWEGEIFIDG-- 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 383 vlslDAVSLRR----MRRSIQMIFQDPFA-SLNPRMTVGA----AVAEPITEHGLGSGAQARDKAADLLERVGLK-PDMM 452
Cdd:PRK13549 325 ----KPVKIRNpqqaIAQGIAMVPEDRKRdGIVPVMGVGKnitlAALDRFTGGSRIDDAAELKTILESIQRLKVKtASPE 400
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 453 KRYPHeFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVM 532
Cdd:PRK13549 401 LAIAR-LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVM 478
|
570 580
....*....|....*....|....*....
gi 636784243 533 YLGEIveigpRAElFSNpQHAYTKKLMAA 561
Cdd:PRK13549 479 HEGKL-----KGD-LIN-HNLTQEQVMEA 500
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
350-564 |
1.65e-38 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 144.56 E-value: 1.65e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 350 LVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAvslrrMRRSIQMIFQDpfASLNPRMTVGAAVAEPITEHGLG 429
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-----HLRHINMVFQS--YALFPHMTVEENVAFGLKMRKVP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 430 SgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLN 509
Cdd:TIGR01187 74 R-AEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 510 LAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAVPV 564
Cdd:TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINV 206
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
32-191 |
1.99e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 138.55 E-value: 1.99e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRGndaaMIFQEPmtSL 111
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKS----TLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIG----YVFQDP--QL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRF-DEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:pfam00005 71 FPRLTVRENLRLGLLLKG-LSKREKDARAEEALEKLGLGDLADRPvGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
.
gi 636784243 191 T 191
Cdd:pfam00005 150 A 150
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
13-240 |
2.94e-38 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 139.07 E-value: 2.94e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:cd03230 1 IEVRNLSKRY---GK-KTALDDISLTVEKGEIYGLLGPNGAGKTTL----IKIIL-GLLKPDsGEIKVLGKDIKKEPEEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVrgndaAMIFQEPMtslnpiftigrqISEALTCHgdigkaearaETVRLlekvripnaasrfdeyphqfSGGMRQRV 171
Cdd:cd03230 72 KRRI-----GYLPEEPS------------LYENLTVR----------ENLKL--------------------SGGMKQRL 104
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK-KEGKTILLSSHILEEAERLCDRVAILNNGR 172
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
9-280 |
3.12e-38 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 142.46 E-value: 3.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGkdvLALP 88
Cdd:PRK13635 2 KEEIIRVEHIS--FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA----GTITVGG---MVLS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EK---EMRRVRGndaaMIFQEPMTSlnpiF---TIGRQISEALTCHGdigkaEARAETV-RLLEKVRIPNAASRFDEYPH 161
Cdd:PRK13635 73 EEtvwDVRRQVG----MVFQNPDNQ----FvgaTVQDDVAFGLENIG-----VPREEMVeRVDQALRQVGMEDFLNREPH 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 162 QFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEA 241
Cdd:PRK13635 140 RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEI 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 242 VETGTTDDIFHRGRH--------PYTRALLSAVPRLG-----------SMADRKWPLR 280
Cdd:PRK13635 219 LEEGTPEEIFKSGHMlqeigldvPFSVKLKELLKRNGillpntyltmeSLVDELWTLH 276
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
330-551 |
3.30e-38 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 141.30 E-value: 3.30e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV---LSLDAVSLRRMRRSIQMIFQDpf 406
Cdd:COG4161 13 GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsQKPSEKAIRLLRQKVGMVFQQ-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 407 ASLNPRMTVGAAVAE-PITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADES 485
Cdd:COG4161 91 YNLWPHLTVMENLIEaPCKVLGL-SKEQAREKAMKLLARLRLT-DKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGpRAELFSNPQ 551
Cdd:COG4161 169 TAALDPEITAQVVEIIRELSQT-GITQVIVTHEVEFARKVASQVVYMEKGRIIEQG-DASHFTQPQ 232
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
29-240 |
5.69e-38 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 138.47 E-value: 5.69e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSVtslsIMRLLAKGSSRIDGAITLNGKDVLALpeKEMRRVRGNDAAMIFQEPm 108
Cdd:cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKST----LLRCIAGLEEPDSGSILIDGEDLTDL--EDELPPLRRRIGMVFQDF- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tSLNPIFTIGRQISEALtchgdigkaearaetvrllekvripnaasrfdeyphqfSGGMRQRVMIAMALASRPKLLIADE 188
Cdd:cd03229 86 -ALFPHLTVLENIALGL--------------------------------------SGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 189 PTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
330-551 |
8.81e-38 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 140.15 E-value: 8.81e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDG--YDVLS-LDAVSLRRMRRSIQMIFQDpf 406
Cdd:PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhFDFSKtPSDKAIRELRRNVGMVFQQ-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 407 ASLNPRMTVGAAVAE-PITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADES 485
Cdd:PRK11124 91 YNLWPHLTVQQNLIEaPCRVLGL-SKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPrAELFSNPQ 551
Cdd:PRK11124 169 TAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQ 232
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
9-250 |
1.02e-37 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 140.56 E-value: 1.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAF--LVdgdwkpVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVL 85
Cdd:COG0411 1 SDPLLEVRGLTKRFggLV------AVDDVSLEVERGEIVGLIGPNGAGKT----TLFNLIT-GFYRPTsGRILFDGRDIT 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 ALPEKEMRR-----------------VRGN-DAAMIFQEPMTSLNPIFTIGRQISEAltchgdigkAEARAETVRLLEKV 147
Cdd:COG0411 70 GLPPHRIARlgiartfqnprlfpeltVLENvLVAAHARLGRGLLAALLRLPRARREE---------REARERAEELLERV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 148 RIpnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVA 227
Cdd:COG0411 141 GL---ADRADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVM 217
|
250 260
....*....|....*....|...
gi 636784243 228 EIADRTIVMYRGEAVETGTTDDI 250
Cdd:COG0411 218 GLADRIVVLDFGRVIAEGTPAEV 240
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
330-557 |
1.27e-37 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 139.98 E-value: 1.27e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNG-----GSVSLDGYDVLSLDaVSLRRMRRSIQMIFQ- 403
Cdd:PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEearveGEVRLFGRNIYSPD-VDPIEVRREVGMVFQy 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 404 -DPFaslnPRMTVGAAVAEPITEHGLGSGAQARD-------KAADLLERVglkPDMMKRYPHEFSGGQRQRICIARALAL 475
Cdd:PRK14267 94 pNPF----PHLTIYDNVAIGVKLNGLVKSKKELDervewalKKAALWDEV---KDRLNDYPSNLSGGQRQRLVIARALAM 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 476 DPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLafLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYT 555
Cdd:PRK14267 167 KPKILLMDEPTANIDPVGTAKIEELLFELKKEYTI--VLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELT 244
|
..
gi 636784243 556 KK 557
Cdd:PRK14267 245 EK 246
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
13-253 |
1.37e-37 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 139.63 E-value: 1.37e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:cd03256 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKS----TLLRCLN-GLVEPTsGSVLIDGTDINKLKGKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGnDAAMIFQ-----EPMTSL-----------NPIFTIGRQISEAltchgDIGKAEARAETVRLLEKvripnAASR 155
Cdd:cd03256 73 LRQLRR-QIGMIFQqfnliERLSVLenvlsgrlgrrSTWRSLFGLFPKE-----EKQRALAALERVGLLDK-----AYQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 156 FDeyphQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIV 235
Cdd:cd03256 142 AD----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVG 217
|
250 260
....*....|....*....|..
gi 636784243 236 MYRGEAVETGT----TDDIFHR 253
Cdd:cd03256 218 LKDGRIVFDGPpaelTDEVLDE 239
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
309-541 |
1.71e-37 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 138.54 E-value: 1.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03301 1 VELENVTKRF-----------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vslrrMRRSIQMIFQDpFAsLNPRMTVGAAVAEPITEHGLGSGAQAR--DKAADLLERVGLkpdmMKRYPHEFSGGQRQR 466
Cdd:cd03301 70 -----KDRDIAMVFQN-YA-LYPHMTVYDNIAFGLKLRKVPKDEIDErvREVAELLQIEHL----LDRKPKQLSGGQRQR 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
13-260 |
1.76e-37 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 138.91 E-value: 1.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKT----TLLRLIA-GFETPTsGEILLDGKDITNLPPHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mRRVRgndaaMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRV 171
Cdd:cd03300 72 -RPVN-----TVFQN--YALFPHLTVFENIAFGLRLKK-LPKAEIKERVAEALDLVQLEGYANR---KPSQLSGGQQQRV 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219
|
....*....
gi 636784243 252 hrgRHPYTR 260
Cdd:cd03300 220 ---EEPANR 225
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
309-546 |
2.04e-37 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 138.41 E-value: 2.04e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSlda 388
Cdd:cd03263 1 LQIRNLTKTY---------KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vSLRRMRRSIQMIFQdpFASLNPRMTVgaavaepiTEH--------GLgSGAQARDKAADLLERVGLKPDmMKRYPHEFS 460
Cdd:cd03263 69 -DRKAARQSLGYCPQ--FDALFDELTV--------REHlrfyarlkGL-PKSEIKEEVELLLRVLGLTDK-ANKRARTLS 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 461 GGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 540
Cdd:cd03263 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213
|
....*.
gi 636784243 541 GPRAEL 546
Cdd:cd03263 214 GSPQEL 219
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
29-245 |
2.09e-37 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 136.80 E-value: 2.09e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSL-SIMRLLAKGSsridGAITLNGKDVLALPEKEMRRVRgndaAMIFQep 107
Cdd:cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKS-TLLkTLAGLLKPSS----GEILLDGKDLASLSPKELARKI----AYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 108 mtslnpiftigrqisealtchgdigkaearaetvrLLEKVRIPNAASR-FDEyphqFSGGMRQRVMIAMALASRPKLLIA 186
Cdd:cd03214 81 -----------------------------------ALELLGLAHLADRpFNE----LSGGERQRVLLARALAQEPPILLL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 187 DEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
8-251 |
3.52e-37 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 138.68 E-value: 3.52e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFlvDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSvtSL--SIMRLLAKGSsridGAITLNGKDvl 85
Cdd:COG1121 2 MMMPAIELENLTVSY--GG--RPVLEDVSLTIPPGEFVAIVGPNGAGKS--TLlkAILGLLPPTS----GTVRLFGKP-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 alPEKEMRRV------RGNDAAMifqePMTslnpiftigrqISE--ALTCHGDIG-----KAEARAETVRLLEKVRIPNA 152
Cdd:COG1121 70 --PRRARRRIgyvpqrAEVDWDF----PIT-----------VRDvvLMGRYGRRGlfrrpSRADREAVDEALERVGLEDL 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 153 ASRfdeyphQF---SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEI 229
Cdd:COG1121 133 ADR------PIgelSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELR-REGKTILVVTHDLGAVREY 205
|
250 260
....*....|....*....|..
gi 636784243 230 ADRTIVMYRGeAVETGTTDDIF 251
Cdd:COG1121 206 FDRVLLLNRG-LVAHGPPEEVL 226
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
335-562 |
8.13e-37 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 137.87 E-value: 8.13e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLdavSLRRMRRSIQMIFQDPFASLNprMT 414
Cdd:COG1120 17 LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASL---SRRELARRIAYVPQEPPAPFG--LT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 VGAAVA---EPITEHGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDV 491
Cdd:COG1120 92 VRELVAlgrYPHLGLFGRPSAEDREAVEEALERTGLE-HLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDL 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 492 SIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFsnpqhayTKKLMAAV 562
Cdd:COG1120 171 AHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL-------TPELLEEV 234
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
307-548 |
1.93e-36 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 137.45 E-value: 1.93e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFdirggllgrKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvLSL 386
Cdd:PRK13635 4 EIIRVEHISFRY---------PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG---MVL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAVSLRRMRRSIQMIFQDP---FaslnprmtVGAAVAEPITeHGLGSGAQARD----KAADLLERVGLKpDMMKRYPHEF 459
Cdd:PRK13635 72 SEETVWDVRRQVGMVFQNPdnqF--------VGATVQDDVA-FGLENIGVPREemveRVDQALRQVGME-DFLNREPHRL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 460 SGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVE 539
Cdd:PRK13635 142 SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILE 220
|
....*....
gi 636784243 540 IGPRAELFS 548
Cdd:PRK13635 221 EGTPEEIFK 229
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
12-239 |
1.95e-36 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 135.53 E-value: 1.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKE 91
Cdd:TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKT-TLLTLIGGLRSVQE---GSLKVLGQELHGASKKQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGNdAAMIFQEpmTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNaasRFDEYPHQFSGGMRQRV 171
Cdd:TIGR02982 77 LVQLRRR-IGYIFQA--HNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD---HLNYYPHNLSGGQKQRV 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVaEIADRTIVMYRG 239
Cdd:TIGR02982 151 AIARALVHHPKLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHDNRIL-DVADRILQMEDG 217
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
15-259 |
6.12e-36 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 134.77 E-value: 6.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 15 VRNLTTAFlvdGDWkPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEmRR 94
Cdd:cd03296 5 VRNVSKRF---GDF-VALDDVSLDIPSGELVALLGPSGSGKT----TLLRLIAGLERPDSGTILFGGEDATDVPVQE-RN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 95 VrgndaAMIFQEpmTSLNPIFTIGRQISEALTC---HGDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRV 171
Cdd:cd03296 76 V-----GFVFQH--YALFRHMTVFDNVAFGLRVkprSERPPEAEIRAKVHELLKLVQLDWLADR---YPAQLSGGQRQRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225
|
....*...
gi 636784243 252 hrgRHPYT 259
Cdd:cd03296 226 ---DHPAS 230
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-264 |
1.07e-35 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 134.78 E-value: 1.07e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 1 MSDVSSaSASPVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvTSL-SIMRL--LAKGSsRIDGAI 77
Cdd:COG1117 1 MTAPAS-TLEPKIEVRNLNVYY---GD-KQALKDINLDIPENKVTALIGPSGCGKS-TLLrCLNRMndLIPGA-RVEGEI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 78 TLNGKDVLAL---PEKEMRRVrgndaAMIFQEPmtslNPI-FTIGRQISEALTCHGDIGKAEArAETV-RLLEKVRIPN- 151
Cdd:COG1117 74 LLDGEDIYDPdvdVVELRRRV-----GMVFQKP----NPFpKSIYDNVAYGLRLHGIKSKSEL-DEIVeESLRKAALWDe 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 152 AASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEegMSVLFITHDMGVVAEIAD 231
Cdd:COG1117 144 VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD--YTIVIVTHNMQQAARVSD 221
|
250 260 270
....*....|....*....|....*....|...
gi 636784243 232 RTIVMYRGEAVETGTTDDIFHRGRHPYTRALLS 264
Cdd:COG1117 222 YTAFFYLGELVEFGPTEQIFTNPKDKRTEDYIT 254
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
10-260 |
1.12e-35 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 137.48 E-value: 1.12e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFlvdGDWKpVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALP 88
Cdd:TIGR03265 2 SPYLSIDNIRKRF---GAFT-ALKDISLSVKKGEFVCLLGPSGCGKT----TLLRIIA-GLERQTaGTIYQGGRDITRLP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKemRRvrgnDAAMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMR 168
Cdd:TIGR03265 73 PQ--KR----DYGIVFQS--YALFPNLTVADNIAYGLKNRG-MGRAEVAERVAELLDLVGLPGSE---RKYPGQLSGGQQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTD 248
Cdd:TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQ 220
|
250
....*....|..
gi 636784243 249 DIFhrgRHPYTR 260
Cdd:TIGR03265 221 EIY---RHPATP 229
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
30-250 |
1.17e-35 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 134.06 E-value: 1.17e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLAlPEKEMRRVRgNDAAMIFQE--- 106
Cdd:PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKS----TLLRCINKLEEITSGDLIVDGLKVND-PKVDERLIR-QEAGMVFQQfyl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 -P-MTSLNPIFTIGRQISEAltchgdiGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLL 184
Cdd:PRK09493 89 fPhLTALENVMFGPLRVRGA-------SKEEAEKQARELLAKVGL---AERAHHYPSELSGGQQQRVAIARALAVKPKLM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 185 IADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
29-243 |
1.58e-35 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 133.25 E-value: 1.58e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEKEMRRVR---GndaaMIF 104
Cdd:COG2884 15 REALSDVSLEIEKGEFVFLTGPSGAGKS----TLLKLLY-GEERPTsGQVLVNGQDLSRLKRREIPYLRrriG----VVF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 105 QEpmtslnpiF------TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALA 178
Cdd:COG2884 86 QD--------FrllpdrTVYENVALPLRVTG-KSRKEIRRRVREVLDLVGLSDKA---KALPHELSGGEQQRVAIARALV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 179 SRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVE 243
Cdd:COG2884 154 NRPELLLADEPTGNLDPETSWEIMELLEEIN-RRGTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
309-550 |
1.78e-35 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 136.77 E-value: 1.78e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslda 388
Cdd:PRK11432 7 VVLKNITKRF-----------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vslrrMRRSIQ-----MIFQDpfASLNPRMTVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQ 463
Cdd:PRK11432 71 -----THRSIQqrdicMVFQS--YALFPHMSLGENVGYGLKMLGVPK-EERKQRVKEALELVDLA-GFEDRYVDQISGGQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPR 543
Cdd:PRK11432 142 QQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSP 221
|
....*..
gi 636784243 544 AELFSNP 550
Cdd:PRK11432 222 QELYRQP 228
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
305-551 |
2.21e-35 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 134.35 E-value: 2.21e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLVTRFDirggllgrkTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVl 384
Cdd:PRK13632 4 KSVMIKVENVSFSYP---------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 slDAVSLRRMRRSIQMIFQDP---FaslnprmtVGAAVAEPIT---EHGLGSGAQARDKAADLLERVGLKpDMMKRYPHE 458
Cdd:PRK13632 74 --SKENLKEIRKKIGIIFQNPdnqF--------IGATVEDDIAfglENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQN 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 459 FSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMavvERV--SHRVAVMYLGE 536
Cdd:PRK13632 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM---DEAilADKVIVFSEGK 219
|
250
....*....|....*
gi 636784243 537 IVEIGPRAELFSNPQ 551
Cdd:PRK13632 220 LIAQGKPKEILNNKE 234
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
309-537 |
4.21e-35 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 130.21 E-value: 4.21e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSlda 388
Cdd:cd03230 1 IEVRNLSKRY-----------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vSLRRMRRSIQMIFQDPfaSLNPRMTVgaavaepitehglgsgaqardkaADLLErvglkpdmmkrypheFSGGQRQRIC 468
Cdd:cd03230 67 -EPEEVKRRIGYLPEEP--SLYENLTV-----------------------RENLK---------------LSGGMKQRLA 105
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
339-541 |
4.83e-35 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 131.65 E-value: 4.83e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNL-----FQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydVLSLDA---VSLRRMRRSIQMIFQDpfASLN 410
Cdd:cd03297 12 DFTLkidfdLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNG--TVLFDSrkkINLPPQQRKIGLVFQQ--YALF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 PRMTVgaavAEPItEHGL--GSGAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSA 488
Cdd:cd03297 88 PHLNV----RENL-AFGLkrKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 636784243 489 LDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03297 162 LDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
12-258 |
5.06e-35 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 132.42 E-value: 5.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKE 91
Cdd:TIGR02315 1 MLEVENLSKVY---PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS----GSILLEGTDITKLRGKK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGNdAAMIFQE-----PMTSLNPIFtIGRQISEAL--TCHGDIGKAEaRAETVRLLEKVRIPN-AASRFDeyphQF 163
Cdd:TIGR02315 74 LRKLRRR-IGMIFQHynlieRLTVLENVL-HGRLGYKPTwrSLLGRFSEED-KERALSALERVGLADkAYQRAD----QL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVE 243
Cdd:TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226
|
250
....*....|....*.
gi 636784243 244 TGTTDDIF-HRGRHPY 258
Cdd:TIGR02315 227 DGAPSELDdEVLRHIY 242
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
14-240 |
5.40e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 129.67 E-value: 5.40e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 14 SVRNLTTAFLVdgdwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMR 93
Cdd:cd00267 1 EIENLSFRYGG----RTALDNVSLTLKAGEIVALVGPNGSGKS----TLLRAIAGLLKPTSGEILIDGKDIAKLPLEELR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 94 RvrgndaamifqepmtslnPIFTIgrqisealtchgdigkaearaetvrllekvripnaasrfdeypHQFSGGMRQRVMI 173
Cdd:cd00267 73 R------------------RIGYV-------------------------------------------PQLSGGQRQRVAL 91
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 174 AMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA-EEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
305-555 |
7.35e-35 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 135.85 E-value: 7.35e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLVTRFDirggllgRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVL 384
Cdd:PRK09452 11 LSPLVELRGISKSFD-------GKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLDAvslrrMRRSIQMIFQDpFAsLNPRMTVGAAVAepiteHGLG----SGAQARDKAADLLERVGLKpDMMKRYPHEFS 460
Cdd:PRK09452 80 HVPA-----ENRHVNTVFQS-YA-LFPHMTVFENVA-----FGLRmqktPAAEITPRVMEALRMVQLE-EFAQRKPHQLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 461 GGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 540
Cdd:PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
|
250
....*....|....*
gi 636784243 541 GPRAELFSNPQHAYT 555
Cdd:PRK09452 227 GTPREIYEEPKNLFV 241
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
13-253 |
9.38e-35 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 131.30 E-value: 9.38e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTaflvdgDWKP-VVRDVSFDVMPGETVAIVGESGSGKSVtslsIMRLLAKGSSRIDGAITLNGKDVLALPeKE 91
Cdd:cd03299 1 LKVENLSK------DWKEfKLKNVSLEVERGDYFVILGPTGSGKSV----LLETIAGFIKPDSGKILLNGKDITNLP-PE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVrgndaAMIFQEpmTSLNPIFTIGRQISEALTcHGDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRV 171
Cdd:cd03299 70 KRDI-----SYVPQN--YALFPHMTVYKNIAYGLK-KRKVDKKEIERKVLEIAEMLGIDHLLNR---KPETLSGGEQQRV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
..
gi 636784243 252 HR 253
Cdd:cd03299 219 KK 220
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
32-250 |
9.51e-35 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 130.95 E-value: 9.51e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPeKEMRRVRGndaaMIFQEPmtSL 111
Cdd:cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKT-TTIKMLTTLLKPTS---GRATVAGHDVVREP-REVRRRIG----IVFQDL--SV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFTiGRqisEALTCHGDI---GKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALASRPKLLIADE 188
Cdd:cd03265 85 DDELT-GW---ENLYIHARLygvPGAERRERIDELLDFVGLLEAA---DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 189 PTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
34-248 |
1.04e-34 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 131.67 E-value: 1.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGK--DVLALP-EKEMRRVRgNDAAMIFQEpmTS 110
Cdd:PRK11124 20 DITLDCPQGETLVLLGPSGAGKS-SLLRVLNLLEMPRS---GTLNIAGNhfDFSKTPsDKAIRELR-RNVGMVFQQ--YN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 LNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF---PLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 191 TALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTD 248
Cdd:PRK11124 170 AALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
306-532 |
1.06e-34 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 131.02 E-value: 1.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFDIRggLLGRKTgaIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLD-GYDVL 384
Cdd:COG4778 2 TTLLEVENLSKTFTLH--LQGGKR--LPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhDGGWV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLDAVSLRRM----RRSIQMIFQdpFASLNPRMTVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKPDMMKRYPHEFS 460
Cdd:COG4778 78 DLAQASPREIlalrRRTIGYVSQ--FLRVIPRVSALDVVAEPLLERGVDR-EEARARARELLARLNLPERLWDLPPATFS 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 461 GGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVM 532
Cdd:COG4778 155 GGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDV 225
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
15-264 |
1.06e-34 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 131.46 E-value: 1.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 15 VRNLTTAFlvdGDWKpVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPekemrr 94
Cdd:TIGR00968 3 IANISKRF---GSFQ-ALDDVNLEVPTGSLVALLGPSGSGKS----TLLRIIAGLEQPDSGRIRLNGQDATRVH------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 95 VRGNDAAMIFQEpmTSLNPIFTIGRQISEALTCHgDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIA 174
Cdd:TIGR00968 69 ARDRKIGFVFQH--YALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLGDR---YPNQLSGGQRQRVALA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 175 MALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFhrg 254
Cdd:TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY--- 219
|
250
....*....|
gi 636784243 255 RHPYTRALLS 264
Cdd:TIGR00968 220 DHPANPFVMS 229
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
9-561 |
1.59e-34 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 137.22 E-value: 1.59e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAFlvdgdwKPV--VRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLA 86
Cdd:PRK09700 2 ATPYISMAGIGKSF------GPVhaLKSVNLTVYPGEIHALLGENGAGKS----TLMKVLSGIHEPTKGTITINNINYNK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMRRvrgNDAAMIFQE-----PMTSLNPIFtIGRQISEALTCHGDIGKAEARAETVRLLEKVRIpnaASRFDEYPH 161
Cdd:PRK09700 72 LDHKLAAQ---LGIGIIYQElsvidELTVLENLY-IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL---KVDLDEKVA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 162 QFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIADRTIVMYRGEA 241
Cdd:PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSS 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 242 VETGTTDDIFHRGrhpytrallsaVPRLgsMADRKWPLRFPVVDTTTGerrepvevadtvDRRRTPILEVKNlVTRFDIR 321
Cdd:PRK09700 224 VCSGMVSDVSNDD-----------IVRL--MVGRELQNRFNAMKENVS------------NLAHETVFEVRN-VTSRDRK 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 322 ggllgrktgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVL---SLDAVslrrmRRSI 398
Cdd:PRK09700 278 ------------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprsPLDAV-----KKGM 340
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 399 QMIFQDP-----FASLNPRMTVgaAVAEPITEHGLG------SGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRI 467
Cdd:PRK09700 341 AYITESRrdngfFPNFSIAQNM--AISRSLKDGGYKgamglfHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIveigprAELF 547
Cdd:PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRL------TQIL 491
|
570
....*....|....
gi 636784243 548 SNPQHAYTKKLMAA 561
Cdd:PRK09700 492 TNRDDMSEEEIMAW 505
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
5-260 |
1.66e-34 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 134.58 E-value: 1.66e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 5 SSASASPVLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDV 84
Cdd:PRK11607 12 TRKALTPLLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKS----TLLRMLAGFEQPTAGQIMLDGVDL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 LALPEKEmRRVRgndaaMIFQEpmTSLNPIFTIGRQISEALTcHGDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFS 164
Cdd:PRK11607 84 SHVPPYQ-RPIN-----MMFQS--YALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLVHMQEFAKR---KPHQLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQI-LDLIKMLqEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVE 243
Cdd:PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMqLEVVDIL-ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230
|
250
....*....|....*..
gi 636784243 244 TGTTDDIFhrgRHPYTR 260
Cdd:PRK11607 231 IGEPEEIY---EHPTTR 244
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
292-554 |
1.78e-34 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 139.20 E-value: 1.78e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 292 REPVEVADTVDRRRTPIL----EVKNLVTRFDIRGGLlgrktgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITR 367
Cdd:COG2274 453 DLPPEREEGRSKLSLPRLkgdiELENVSFRYPGDSPP---------VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLG 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 368 LVQPNGGSVSLDGYDVLSLDAVSLRRmrrSIQMIFQDPF---ASlnprmtvgaaVAEPITehgLGSGAQARDKAADLLER 444
Cdd:COG2274 524 LYEPTSGRILIDGIDLRQIDPASLRR---QIGVVLQDVFlfsGT----------IRENIT---LGDPDATDEEIIEAARL 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 445 VGLKPDMMKRyPH-----------EFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFL 513
Cdd:COG2274 588 AGLHDFIEAL-PMgydtvvgeggsNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVI 664
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 636784243 514 FISHDMAVVERVsHRVAVMYLGEIVEIGPRAELFSNPQHAY 554
Cdd:COG2274 665 IIAHRLSTIRLA-DRIIVLDKGRIVEDGTHEELLARKGLYA 704
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
13-250 |
2.00e-34 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 130.63 E-value: 2.00e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAF--LVdgdwkpVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEK 90
Cdd:cd03219 1 LEVRGLTKRFggLV------ALDDVSFSVRPGEIHGLIGPNGAGKT-TLFNLISGFLRPTS---GSVLFDGEDITGLPPH 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRR---VRGNDAAMIFQEpMTSLNPIfTIGRQISEALTCHGDI---GKAEARAETVRLLEKVRIpnaASRFDEYPHQFS 164
Cdd:cd03219 71 EIARlgiGRTFQIPRLFPE-LTVLENV-MVAAQARTGSGLLLARarrEEREARERAEELLERVGL---ADLADRPAGELS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
....*.
gi 636784243 245 GTTDDI 250
Cdd:cd03219 225 GTPDEV 230
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
325-560 |
2.32e-34 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 131.24 E-value: 2.32e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 325 LGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL----------DAVSLRRM 394
Cdd:PRK10619 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVrdkdgqlkvaDKNQLRLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 395 RRSIQMIFQDpfASLNPRMTVGAAVAE-PITEHGLgSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARAL 473
Cdd:PRK10619 91 RTRLTMVFQH--FNLWSHMTVLENVMEaPIQVLGL-SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 474 ALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHA 553
Cdd:PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP 246
|
....*..
gi 636784243 554 YTKKLMA 560
Cdd:PRK10619 247 RLQQFLK 253
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
15-264 |
2.87e-34 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 130.64 E-value: 2.87e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 15 VRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRID-GAITLNGKDVLALPEKEMR 93
Cdd:PRK11264 6 VKNLVKKF----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRvGDITIDTARSLSQQKGLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 94 RVRgNDAAMIFQEpmTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQRVMI 173
Cdd:PRK11264 82 QLR-QHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL---AGKETSYPRRLSGGQQQRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 174 AMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLfITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHR 253
Cdd:PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
250
....*....|.
gi 636784243 254 GRHPYTRALLS 264
Cdd:PRK11264 235 PQQPRTRQFLE 245
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
305-545 |
3.05e-34 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 129.86 E-value: 3.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLVTRfdirgglLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV- 383
Cdd:COG4181 5 SAPIIELRGLTKT-------VGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLf 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 384 -LSLDAVSLRRmRRSIQMIFQDpFaSLNPRMTVGAAVAEPITehgLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGG 462
Cdd:COG4181 78 aLDEDARARLR-ARHVGFVFQS-F-QLLPTLTALENVMLPLE---LAGRRDARARARALLERVGLG-HRLDHYPAQLSGG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 463 QRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGP 542
Cdd:COG4181 151 EQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDTA 229
|
...
gi 636784243 543 RAE 545
Cdd:COG4181 230 ATA 232
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
309-559 |
5.04e-34 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 129.87 E-value: 5.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDIRGGLLGrktgaihavedVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSV-----SLDGYDV 383
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHG-----------IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIrvgdiTIDTARS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 384 LSLDAVSLRRMRRSIQMIFQDpfASLNPRMTVGAAVAE-PITEHGLgSGAQARDKAADLLERVGL--KPDmmkRYPHEFS 460
Cdd:PRK11264 73 LSQQKGLIRQLRQHVGFVFQN--FNLFPHRTVLENIIEgPVIVKGE-PKEEATARARELLAKVGLagKET---SYPRRLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 461 GGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 540
Cdd:PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225
|
250
....*....|....*....
gi 636784243 541 GPRAELFSNPQHAYTKKLM 559
Cdd:PRK11264 226 GPAKALFADPQQPRTRQFL 244
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
316-557 |
9.53e-34 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 129.26 E-value: 9.53e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 316 TRFDIRGglLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQ--PNG---GSVSLDGYDVLSLDAVS 390
Cdd:PRK14247 2 NKIEIRD--LKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEArvsGEVYLDGQDIFKMDVIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 391 LRRmrrSIQMIFQDPfaSLNPRMTVGAAVAEPITEHGL-GSGAQARDKAADLLERVGLKPDMMKRY---PHEFSGGQRQR 466
Cdd:PRK14247 80 LRR---RVQMVFQIP--NPIPNLSIFENVALGLKLNRLvKSKKELQERVRWALEKAQLWDEVKDRLdapAGKLSGGQQQR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
250
....*....|.
gi 636784243 547 FSNPQHAYTKK 557
Cdd:PRK14247 233 FTNPRHELTEK 243
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
13-240 |
3.07e-33 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 126.47 E-value: 3.07e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEM 92
Cdd:COG4619 1 LELEGLSFRV----GGKPILSPVSLTLEAGECVAITGPSGSGKS-TLLRALADLDPPTS---GEIYLDGKPLSAMPPPEW 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPmtslnPIF--TIGRQISEALTCHGdigKAEARAETVRLLEKVRIPNAAsrFDEYPHQFSGGMRQR 170
Cdd:COG4619 73 RR----QVAYVPQEP-----ALWggTVRDNLPFPFQLRE---RKFDRERALELLERLGLPPDI--LDKPVERLSGGERQR 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:COG4619 139 LALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGR 208
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
325-536 |
3.23e-33 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 124.66 E-value: 3.23e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 325 LGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDavsLRRMRRSIQMIFQd 404
Cdd:cd00267 5 LSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP---LEELRRRIGYVPQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 405 pfaslnprmtvgaavaepitehglgsgaqardkaadllervglkpdmmkrypheFSGGQRQRICIARALALDPKVIVADE 484
Cdd:cd00267 81 ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 485 SVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGE 536
Cdd:cd00267 107 PTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
306-554 |
3.54e-33 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 127.51 E-value: 3.54e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllGRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVls 385
Cdd:COG1121 4 MPAIELENLTVSY-------GGRP----VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP-- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 ldavslRRMRRSI----QMifqdpfASLNPR--MTVGAAVAEPITEH-GL--GSGAQARDKAADLLERVGLKpDMMKRYP 456
Cdd:COG1121 71 ------RRARRRIgyvpQR------AEVDWDfpITVRDVVLMGRYGRrGLfrRPSRADREAVDEALERVGLE-DLADRPI 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 457 HEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMyLGE 536
Cdd:COG1121 138 GELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLL-NRG 215
|
250 260
....*....|....*....|
gi 636784243 537 IVEIGPRAELFS--NPQHAY 554
Cdd:COG1121 216 LVAHGPPEEVLTpeNLSRAY 235
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
30-260 |
4.87e-33 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 128.66 E-value: 4.87e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKeMRRVRGndaaMIFQEPmt 109
Cdd:TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKT-TTIRMLTTLLRPTS---GTARVAGYDVVREPRK-VRRSIG----IVPQYA-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 SLNPIFTiGRqisEALTCHGD---IGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALASRPKLLIA 186
Cdd:TIGR01188 76 SVDEDLT-GR---ENLEMMGRlygLPKDEAEERAEELLELFELGEAA---DRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 187 DEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHR--GRHPYTR 260
Cdd:TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALK-EEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRlgKDTLESR 223
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
31-281 |
9.91e-33 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 129.05 E-value: 9.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEmRRVrgndaAMIFQEpmTS 110
Cdd:PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKT----TLLRIIAGLEHQTSGHIRFHGTDVSRLHARD-RKV-----GFVFQH--YA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 LNPIFTIGRQISEALTC---HGDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMALASRPKLLIAD 187
Cdd:PRK10851 85 LFRHMTVFDNIAFGLTVlprRERPNAAAIKAKVTQLLEMVQLAHLADR---YPAQLSGGQKQRVALARALAVEPQILLLD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 188 EPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFhrgRHPYTR---ALLS 264
Cdd:PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW---REPATRfvlEFMG 238
|
250 260
....*....|....*....|....*
gi 636784243 265 AVPRL-----GS---MADRKWPLRF 281
Cdd:PRK10851 239 EVNRLqgtirGGqfhVGAHRWPLGY 263
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
7-264 |
9.92e-33 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 132.97 E-value: 9.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 7 ASASPVLSVRNLTTAFlvDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLS-IMRLLAKGSsridGAITLNGKDVL 85
Cdd:COG4987 328 APGGPSLELEDVSFRY--PGAGRPVLDGLSLTLPPGERVAIVGPSGSGKS-TLLAlLLRFLDPQS----GSITLGGVDLR 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 ALPEKEMRRVrgndAAMIFQEPmtslnPIF--TIGrqisEALTchgdIGKAEA-RAETVRLLEKVRI-------PNA-AS 154
Cdd:COG4987 401 DLDEDDLRRR----IAVVPQRP-----HLFdtTLR----ENLR----LARPDAtDEELWAALERVGLgdwlaalPDGlDT 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 155 RFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIkmLQEEEGMSVLFITHDMgVVAEIADRTI 234
Cdd:COG4987 464 WLGEGGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADL--LEALAGRTVLLITHRL-AGLERMDRIL 540
|
250 260 270
....*....|....*....|....*....|
gi 636784243 235 VMYRGEAVETGTTDDIFHrgRHPYTRALLS 264
Cdd:COG4987 541 VLEDGRIVEQGTHEELLA--QNGRYRQLYQ 568
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
337-550 |
1.17e-32 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 129.07 E-value: 1.17e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGyDVLsLDAVSLRRM---RRSIQMIFQDpfASLNPRM 413
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGG-EVL-QDSARGIFLpphRRRIGYVFQE--ARLFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TV------GAAVAEPitehglgsgAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVS 487
Cdd:COG4148 93 SVrgnllyGRKRAPR---------AERRISFDEVVELLGIGH-LLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 488 ALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:COG4148 163 ALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
309-546 |
1.24e-32 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 125.17 E-value: 1.24e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSlDA 388
Cdd:cd03265 1 IEVENLVKKY-----------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vslRRMRRSIQMIFQDPfaSLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRIC 468
Cdd:cd03265 69 ---REVRRRIGIVFQDL--SVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLE 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:cd03265 142 IARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
13-253 |
2.20e-32 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 127.88 E-value: 2.20e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:COG3839 4 LELENVSKSY---GG-VEALKDIDLDIEDGEFLVLLGPSGCGKSTL----LRMIA-GLEDPTsGEILIGGRDVTDLPPKD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mRRVrgndaAMIFQEPmtSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRV 171
Cdd:COG3839 75 -RNI-----AMVFQSY--ALYPHMTVYENIAFPLKLRK-VPKAEIDRRVREAAELLGLEDLLDR---KPKQLSGGQRQRV 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHD----MGvvaeIADRTIVMYRGEAVETGTT 247
Cdd:COG3839 143 ALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDqveaMT----LADRIAVMNDGRIQQVGTP 218
|
....*.
gi 636784243 248 DDIFHR 253
Cdd:COG3839 219 EELYDR 224
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
335-541 |
2.68e-32 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 122.93 E-value: 2.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRrsiqmifqdpfaslnprmt 414
Cdd:cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKI------------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 vgAAVAepitehglgsgaQArdkaadlLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIK 494
Cdd:cd03214 76 --AYVP------------QA-------LELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 636784243 495 AQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
30-261 |
2.68e-32 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 124.74 E-value: 2.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGK--DVLALP-EKEMRRVRGNdAAMIFQE 106
Cdd:COG4161 16 QALFDINLECPSGETLVLLGPSGAGKS-SLLRVLNLLETPDS---GQLNIAGHqfDFSQKPsEKAIRLLRQK-VGMVFQQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 pmTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLIA 186
Cdd:COG4161 91 --YNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRF---PLHLSGGQQQRVAIARALMMEPQVLLF 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 187 DEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTdDIFhrgRHPYTRA 261
Cdd:COG4161 166 DEPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDA-SHF---TQPQTEA 235
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
334-532 |
3.56e-32 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 122.11 E-value: 3.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlsLDAVSLRRMRRSIQMIFQDPF---ASln 410
Cdd:cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD---LRDLDLESLRKNIAYVPQDPFlfsGT-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 prmtvgaaVAEPItehglgsgaqardkaadllervglkpdmmkrypheFSGGQRQRICIARALALDPKVIVADESVSALD 490
Cdd:cd03228 92 --------IRENI-----------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALD 128
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 636784243 491 VSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVsHRVAVM 532
Cdd:cd03228 129 PETEALILEALRALAK--GKTVIVIAHRLSTIRDA-DRIIVL 167
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
307-555 |
3.67e-32 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 124.89 E-value: 3.67e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFdirggllGRKtgaiHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRL--VQPN---GGSVSLDGY 381
Cdd:PRK14239 4 PILQVSDLSVYY-------NKK----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPEvtiTGSIVYNGH 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 382 DVLS--LDAVSLRRmrrSIQMIFQDPfaslNP-RMTVGAAVAEPITEHGLgsgaqaRDKAAdLLERV--GLKP----DMM 452
Cdd:PRK14239 73 NIYSprTDTVDLRK---EIGMVFQQP----NPfPMSIYENVVYGLRLKGI------KDKQV-LDEAVekSLKGasiwDEV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 453 KRYPHE----FSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLafLFISHDMAVVERVSHR 528
Cdd:PRK14239 139 KDRLHDsalgLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTRSMQQASRISDR 216
|
250 260
....*....|....*....|....*..
gi 636784243 529 VAVMYLGEIVEIGPRAELFSNPQHAYT 555
Cdd:PRK14239 217 TGFFLDGDLIEYNDTKQMFMNPKHKET 243
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
13-258 |
4.94e-32 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 131.88 E-value: 4.94e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM 92
Cdd:COG2274 474 IELENVS--FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKS----TLLKLLLGLYEPTSGRILIDGIDLRQIDPASL 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPMtslnpIF--TIGRQISealtchgdIGKAEARAEtvRLLEKVRIPNAASRFDEYPH--------- 161
Cdd:COG2274 548 RR----QIGVVLQDVF-----LFsgTIRENIT--------LGDPDATDE--EIIEAARLAGLHDFIEALPMgydtvvgeg 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 162 --QFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVAeIADRTIVMYRG 239
Cdd:COG2274 609 gsNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLR--RLLKGRTVIIIAHRLSTIR-LADRIIVLDKG 685
|
250
....*....|....*....
gi 636784243 240 EAVETGTTDDIFHRGRHPY 258
Cdd:COG2274 686 RIVEDGTHEELLARKGLYA 704
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
31-264 |
5.87e-32 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 124.31 E-value: 5.87e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSsriDGAITLNGKDV---------LALPEKEMRRVRGNDAA 101
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKS-TFLRCINFLEKPS---EGSIVVNGQTInlvrdkdgqLKVADKNQLRLLRTRLT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 102 MIFQEpmTSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAASrfDEYPHQFSGGMRQRVMIAMALASRP 181
Cdd:PRK10619 96 MVFQH--FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ--GKYPVHLSGGQQQRVSIARALAMEP 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 182 KLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRHPYTRA 261
Cdd:PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQ 250
|
...
gi 636784243 262 LLS 264
Cdd:PRK10619 251 FLK 253
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
32-269 |
6.79e-32 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 127.53 E-value: 6.79e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLakgsSR-ID---GAITLNGKDVLALPEKEMRRVRGNDAAMIFQE- 106
Cdd:COG4175 43 VNDASFDVEEGEIFVIMGLSGSGKS----TLVRCL----NRlIEptaGEVLIDGEDITKLSKKELRELRRKKMSMVFQHf 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 ---P-MTSL-NPIFtiGRQISealtchgDIGKAE--ARAETVrlLEKVripNAASRFDEYPHQFSGGMRQRVMIAMALAS 179
Cdd:COG4175 115 allPhRTVLeNVAF--GLEIQ-------GVPKAErrERAREA--LELV---GLAGWEDSYPDELSGGMQQRVGLARALAT 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 180 RPKLLIADEPTTALDVTI----QGQILDlikmLQEEEGMSVLFITHDMgvvAE---IADRTIVMYRGEAVETGTTDDIFh 252
Cdd:COG4175 181 DPDILLMDEAFSALDPLIrremQDELLE----LQAKLKKTIVFITHDL---DEalrLGDRIAIMKDGRIVQIGTPEEIL- 252
|
250 260
....*....|....*....|
gi 636784243 253 rgRHP---YTRALLSAVPRL 269
Cdd:COG4175 253 --TNPandYVADFVEDVDRS 270
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
308-548 |
7.65e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 124.46 E-value: 7.65e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDirggllgrKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGyDVLSLD 387
Cdd:PRK13650 4 IIEVKNLTFKYK--------EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-DLLTEE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVslRRMRRSIQMIFQDPfaslnPRMTVGAAVAEPIT---EHGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQR 464
Cdd:PRK13650 75 NV--WDIRHKIGMVFQNP-----DNQFVGATVEDDVAfglENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVErVSHRVAVMYLGEIVEIGPRA 544
Cdd:PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPR 225
|
....
gi 636784243 545 ELFS 548
Cdd:PRK13650 226 ELFS 229
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
14-239 |
7.76e-32 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 122.64 E-value: 7.76e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 14 SVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDvlalPEKEMR 93
Cdd:cd03235 1 EVEDLTVSY----GGHPVLEDVSFEVKPGEFLAIVGPNGAGKS----TLLKAILGLLKPTSGSIRVFGKP----LEKERK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 94 RVrgndaAMIFQEpmTSLNPIFTI-GRQISeALTCHGDIG-----KAEARAETVRLLEKVRIPNAASR-FDEyphqFSGG 166
Cdd:cd03235 69 RI-----GYVPQR--RSIDRDFPIsVRDVV-LMGLYGHKGlfrrlSKADKAKVDEALERVGLSELADRqIGE----LSGG 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 167 MRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR-REGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
334-563 |
8.68e-32 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 124.51 E-value: 8.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL--DAVsLRRMRRSIQMIFQDPFASLnp 411
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKtkDKY-IRPVRKRIGMVFQFPESQL-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 rmtvgaavAEPITEHGLGSGA--------QARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVAD 483
Cdd:PRK13646 99 --------FEDTVEREIIFGPknfkmnldEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 484 ESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSnpQHAYTKKLMAAVP 563
Cdd:PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK--DKKKLADWHIGLP 248
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
335-551 |
9.07e-32 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 123.21 E-value: 9.07e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVslrrmRRSIQMIFQDpfASLNPRMT 414
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE-----KRDISYVPQN--YALFPHMT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 VGAAVAEPItEHGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIK 494
Cdd:cd03299 88 VYKNIAYGL-KKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 495 AQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:cd03299 166 EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPK 222
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
10-236 |
1.18e-31 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 122.54 E-value: 1.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAF---LVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGK--- 82
Cdd:COG4778 2 TTLLEVENLSKTFtlhLQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKS----TLLKCIY-GNYLPDsGSILVRHDggw 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 83 -DVLALPEKEMRRVRGNdaamifqepmtslnpifTIG----------RQ-----ISEALTCHGdIGKAEARAETVRLLEK 146
Cdd:COG4778 77 vDLAQASPREILALRRR-----------------TIGyvsqflrvipRVsaldvVAEPLLERG-VDREEARARARELLAR 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 147 VRIPnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVV 226
Cdd:COG4778 139 LNLP--ERLWDLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAK-ARGTAIIGIFHDEEVR 215
|
250
....*....|
gi 636784243 227 AEIADRTIVM 236
Cdd:COG4778 216 EAVADRVVDV 225
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
339-553 |
1.24e-31 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 122.56 E-value: 1.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLdAVSlrrmRRSIQMIFQDP--FASLNprmtvg 416
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTAL-PPA----ERPVSMLFQENnlFPHLT------ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 417 aaVAEPItehGLG-------SGAQaRDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:COG3840 88 --VAQNI---GLGlrpglklTAEQ-RAQVEQALERVGLA-GLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHA 553
Cdd:COG3840 161 DPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPP 224
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
13-240 |
2.42e-31 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 119.80 E-value: 2.42e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM 92
Cdd:cd03228 1 IEFKNVSFSY--PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKS----TLLKLLLRLYDPTSGEILIDGVDLRDLDLESL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVrgndAAMIFQEPMtslnpIFtigrqisealtchgdigkaearAETVR--LLekvripnaasrfdeyphqfSGGMRQR 170
Cdd:cd03228 75 RKN----IAYVPQDPF-----LF----------------------SGTIRenIL-------------------SGGQRQR 104
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeeEGMSVLFITHDMGVVaEIADRTIVMYRGE 240
Cdd:cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRLSTI-RDADRIIVLDDGR 171
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
36-265 |
2.53e-31 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 121.79 E-value: 2.53e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 36 SFDVMPGETVAIVGESGSGKSvTSLSimrLLAkGSSRID-GAITLNGKDVLALPEKEmRRVrgndaAMIFQEpmTSLNPI 114
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKS-TLLN---LIA-GFLPPDsGRILWNGQDLTALPPAE-RPV-----SMLFQE--NNLFPH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 115 FTIGRQISEALTCHGDIGKAEaRAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALD 194
Cdd:COG3840 86 LTVAQNIGLGLRPGLKLTAEQ-RAQVEQALERVGLAGLLDR---LPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 195 VTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRHPYTRALLSA 265
Cdd:COG3840 162 PALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYLGI 232
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
308-541 |
3.11e-31 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 120.94 E-value: 3.11e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDIrggllgrKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLD 387
Cdd:cd03266 1 MITADALTKRFRD-------VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRrsiqmIFQDPFAsLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKPDMMKRyPHEFSGGQRQRI 467
Cdd:cd03266 74 AEARRRLG-----FVSDSTG-LYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRR-VGGFSTGMRQKV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAqvcNLLMDLQQ--SLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATR---ALREFIRQlrALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-537 |
3.18e-31 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 127.47 E-value: 3.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 5 SSASASPVLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDV 84
Cdd:PRK15439 4 SDTTAPPLLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKS----TLMKIIAGIVPPDSGTLEIGGNPC 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 LAL-PEKEMRRvrgnDAAMIFQEPMtsLNPIFTIGRQISEALTCHGDIGKaearaetvRLLEKVRIPNaaSRFDeyPHQF 163
Cdd:PRK15439 76 ARLtPAKAHQL----GIYLVPQEPL--LFPNLSVKENILFGLPKRQASMQ--------KMKQLLAALG--CQLD--LDSS 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGM----RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:PRK15439 138 AGSLevadRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDG 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 240 EAVETGTTDDIfhrgrhpYTRALLSAVPRLGSMAD----RKWPLRFPvvdtttGERRepVEVADTvdrrrtPILEVKNLv 315
Cdd:PRK15439 217 TIALSGKTADL-------STDDIIQAITPAAREKSlsasQKLWLELP------GNRR--QQAAGA------PVLTVEDL- 274
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 316 trfdirggllgrkTGaiHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSlrRMR 395
Cdd:PRK15439 275 -------------TG--EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ--RLA 337
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 396 RSIQMIFQDpfaslnpRMTVGAAVAEPI-------TEHGLGSGAQ-ARDKAadLLER----VGLKPDMMKRYPHEFSGGQ 463
Cdd:PRK15439 338 RGLVYLPED-------RQSSGLYLDAPLawnvcalTHNRRGFWIKpARENA--VLERyrraLNIKFNHAEQAARTLSGGN 408
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
29-234 |
3.31e-31 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 120.41 E-value: 3.31e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEMRRVRGNDAAMIFQEpm 108
Cdd:TIGR03608 11 KVILDDLNLTIEKGKMYAIIGESGSGKS-TLLNIIGLLEKFDS---GQVYLNGQETPPLNSKKASKFRREKLGYLFQN-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tslnpiF------TIGRQISEALTcHGDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMALASRPK 182
Cdd:TIGR03608 85 ------FalieneTVEENLDLGLK-YKKLSKKEKREKKKEALEKVGLNLKLKQ---KIYELSGGEQQRVALARAILKPPP 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 183 LLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMgVVAEIADRTI 234
Cdd:TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELN-DEGKTIIIVTHDP-EVAKQADRVI 204
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
335-557 |
4.66e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 121.69 E-value: 4.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGY------DVLSLDAVslrRMRRSIQMIFQDPfaS 408
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKvlyfgkDIFQIDAI---KLRKEVGMVFQQP--N 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 409 LNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRY---PHEFSGGQRQRICIARALALDPKVIVADES 485
Cdd:PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLnspASQLSGGQQQRLTIARALALKPKVLLMDEP 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSlnLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKK 557
Cdd:PRK14246 181 TSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
12-259 |
8.90e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 120.79 E-value: 8.90e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDWKpVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAK-----GSSRIDGAITLNGKDVLA 86
Cdd:PRK14247 3 KIEIRDLKVSF---GQVE-VLDGVNLEIPDNTITALMGPSGSGKS----TLLRVFNRlielyPEARVSGEVYLDGQDIFK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMRRvrgnDAAMIFQEPmtslNPI--FTIGRQISEALTCHGDI-GKAEARAETVRLLEKVRI-PNAASRFDEYPHQ 162
Cdd:PRK14247 75 MDVIELRR----RVQMVFQIP----NPIpnLSIFENVALGLKLNRLVkSKKELQERVRWALEKAQLwDEVKDRLDAPAGK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 163 FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLikMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAV 242
Cdd:PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL--FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV 224
|
250
....*....|....*..
gi 636784243 243 ETGTTDDIFHRGRHPYT 259
Cdd:PRK14247 225 EWGPTREVFTNPRHELT 241
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
307-561 |
9.55e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 120.91 E-value: 9.55e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFDIRggllgrktgaiHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNG-----GSVSLDGY 381
Cdd:PRK14258 6 PAIKVNNLSFYYDTQ-----------KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 382 DVLSlDAVSLRRMRRSIQMIFQDPfaSLNPrMTVGAAVAEPITEHGLGSGAQARD------KAADLLERVGLKpdmMKRY 455
Cdd:PRK14258 75 NIYE-RRVNLNRLRRQVSMVHPKP--NLFP-MSVYDNVAYGVKIVGWRPKLEIDDivesalKDADLWDEIKHK---IHKS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 456 PHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMY-- 533
Cdd:PRK14258 148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKgn 227
|
250 260 270
....*....|....*....|....*....|.
gi 636784243 534 ---LGEIVEIGPRAELFSNPQHAYTKKLMAA 561
Cdd:PRK14258 228 enrIGQLVEFGLTKKIFNSPHDSRTREYVLS 258
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
16-250 |
1.01e-30 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 122.12 E-value: 1.01e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 16 RNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLS-IMRLLAKGSsridGAITLNGKDVLALPEKEMRR 94
Cdd:COG1125 5 ENVTKRY---PDGTVAVDDLSLTIPAGEFTVLVGPSGCGKT-TTLRmINRLIEPTS----GRILIDGEDIRDLDPVELRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 95 ----VrgndaamIFQepmTSLNPIFTIGRQI---------SEAltchgdigKAEARAETvrLLEKVRIPnaASRF-DEYP 160
Cdd:COG1125 77 rigyV-------IQQ---IGLFPHMTVAENIatvprllgwDKE--------RIRARVDE--LLELVGLD--PEEYrDRYP 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 161 HQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:COG1125 135 HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITREQLQDELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGR 214
|
250
....*....|
gi 636784243 241 AVETGTTDDI 250
Cdd:COG1125 215 IVQYDTPEEI 224
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
13-250 |
1.52e-30 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 119.08 E-value: 1.52e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKEM 92
Cdd:cd03224 1 LEVENLNAGY---GK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS----GSIRFDGRDITGLPPHER 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvRGndAAMIFQepmtslnpiftiGRQISEALTCHGDI---GKAEARAETVRLLEKV--RIPNAASRFDEYPHQFSGGM 167
Cdd:cd03224 73 AR-AG--IGYVPE------------GRRIFPELTVEENLllgAYARRRAKRKARLERVyeLFPRLKERRKQLAGTLSGGE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTT 247
Cdd:cd03224 138 QQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTA 216
|
...
gi 636784243 248 DDI 250
Cdd:cd03224 217 AEL 219
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
32-266 |
2.12e-30 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 123.60 E-value: 2.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRGNDAAMIFQEpmTSL 111
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKS----TMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS--FAL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASrfdEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTT 191
Cdd:PRK10070 118 MPHMTVLDNTAFGMELAG-INAEERREKALDALRQVGLENYAH---SYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 192 ALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRHPYTRALLSAV 266
Cdd:PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGV 268
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
12-321 |
2.17e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 120.98 E-value: 2.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDvlaLPEKE 91
Cdd:COG4152 1 MLELKGLTKRF---GD-KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDS----GEVLWDGEP---LDPED 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRV------RGndaamifqepmtsLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRFDEyphQFSG 165
Cdd:COG4152 70 RRRIgylpeeRG-------------LYPKMKVGEQLVYLARLKG-LSKAEAKRRADEWLERLGLGDRANKKVE---ELSK 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 166 GMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:COG4152 133 GNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSG 211
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 246 TTDDIfhRGRHPYTRAllsavpRLGSMADRKWPLRFP-VVDTTTGERREPVEVADTVDRRrtPILevKNLVTRFDIR 321
Cdd:COG4152 212 SVDEI--RRQFGRNTL------RLEADGDAGWLRALPgVTVVEEDGDGAELKLEDGADAQ--ELL--RALLARGPVR 276
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
32-256 |
3.48e-30 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 118.34 E-value: 3.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLAlpekemrrvRGNDAAMIFQEpmTSL 111
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKS-TLLNLISGLAQPTS---GGVILEGKQITE---------PGPDRMVVFQN--YSL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFTIGRQISEALTC-HGDIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:TIGR01184 66 LPWLTVRENIALAVDRvLPDLSKSERRAIVEEHIALVGLTEAA---DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 191 TALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI-FHRGRH 256
Cdd:TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpFPRPRD 209
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
11-266 |
3.85e-30 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 119.11 E-value: 3.85e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTtaflVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEK 90
Cdd:PRK13548 1 AMLEARNLS----VRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKS----TLLRALSGELSPDSGEVRLNGRPLADWSPA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVRgndaAMIFQEpmTSLNPIFTI------GRQIsealtchGDIGKAEARAETVRLLEKVRIPNAASRFdeYPhQFS 164
Cdd:PRK13548 73 ELARRR----AVLPQH--SSLSFPFTVeevvamGRAP-------HGLSRAEDDALVAAALAQVDLAHLAGRD--YP-QLS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALA------SRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYR 238
Cdd:PRK13548 137 GGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216
|
250 260
....*....|....*....|....*...
gi 636784243 239 GEAVETGTTDDIFhrgrhpyTRALLSAV 266
Cdd:PRK13548 217 GRLVADGTPAEVL-------TPETLRRV 237
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
337-562 |
4.48e-30 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 121.34 E-value: 4.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAvslrRMRRsIQMIFQDpfASLNPRMTVG 416
Cdd:PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA----RDRK-VGFVFQH--YALFRHMTVF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 417 AAVAEPIT---EHGLGSGAQARDKAADLLERVGLkPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSI 493
Cdd:PRK10851 93 DNIAFGLTvlpRRERPNAAAIKAKVTQLLEMVQL-AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 494 KAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAV 562
Cdd:PRK10851 172 RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEV 240
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
13-244 |
4.93e-30 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 115.99 E-value: 4.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM 92
Cdd:cd03216 1 LELRGITKRF---GG-VKALDGVSLSVRRGEVHALLGENGAGKS----TLMKILSGLYKPDSGEILVDGKEVSFASPRDA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgndaamifqepmtslNPIFTIgrqisealtchgdigkaearaetvrllekvripnaasrfdeypHQFSGGMRQRVM 172
Cdd:cd03216 73 RR-----------------AGIAMV-------------------------------------------YQLSVGERQMVE 92
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
13-245 |
5.28e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 117.36 E-value: 5.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:cd03301 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTT----LRMIA-GLEEPTsGRIYIGGRDVTDLPPKD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mrrvrgNDAAMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRV 171
Cdd:cd03301 72 ------RDIAMVFQN--YALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDR---KPKQLSGGQRQRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03301 140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
308-584 |
6.12e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 119.04 E-value: 6.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDirggllgrKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYdvlSLD 387
Cdd:PRK13642 4 ILEVENLVFKYE--------KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE---LLT 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDPfaslnPRMTVGAAVAEPITeHGLGSGAQARDKAADLLERVGLKPDMM---KRYPHEFSGGQR 464
Cdd:PRK13642 73 AENVWNLRRKIGMVFQNP-----DNQFVGATVEDDVA-FGMENQGIPREEMIKRVDEALLAVNMLdfkTREPARLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRA 544
Cdd:PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPS 225
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 636784243 545 ELFSnpqhayTKKLMAAVPVPDPSRRGIKRNLGTDELKSP 584
Cdd:PRK13642 226 ELFA------TSEDMVEIGLDVPFSSNLMKDLRKNGFDLP 259
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
307-518 |
6.86e-30 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 118.43 E-value: 6.86e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFDIRGGllgrktgAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL 386
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQ-------PQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAvslrrmRRSIqmIFQDpfASLNPRMTVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQR 466
Cdd:COG4525 75 GA------DRGV--VFQK--DALLPWLNVLDNVAFGLRLRGVPK-AERRARAEELLALVGLA-DFARRRIWQLSGGMRQR 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHD 518
Cdd:COG4525 143 VGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHS 194
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
309-538 |
6.90e-30 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 115.22 E-value: 6.90e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLda 388
Cdd:cd03216 1 LELRGITKRF-----------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA-- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vSLRRMRRS-IQMIFQdpfaslnprmtvgaavaepitehglgsgaqardkaadllervglkpdmmkrypheFSGGQRQRI 467
Cdd:cd03216 68 -SPRDARRAgIAMVYQ-------------------------------------------------------LSVGERQMV 91
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIV 538
Cdd:cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
11-222 |
7.56e-30 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 116.81 E-value: 7.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKsvTSLsiMRLLAkGSSRID-GAITLNGKDVLALPE 89
Cdd:COG4133 1 MMLEAENLSCRR----GERLLFSGLSFTLAAGEALALTGPNGSGK--TTL--LRILA-GLLPPSaGEVLWNGEPIRDARE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 kEMRRvrgnDAAMIFQEPMtsLNPIFTIGrqisEALTCHGDIGKAEARAETV-RLLEKVRIpnaASRFDEYPHQFSGGMR 168
Cdd:COG4133 72 -DYRR----RLAYLGHADG--LKPELTVR----ENLRFWAALYGLRADREAIdEALEAVGL---AGLADLPVRQLSAGQK 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMsVLFITHD 222
Cdd:COG4133 138 RRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGA-VLLTTHQ 190
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
13-248 |
8.28e-30 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 117.22 E-value: 8.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEKE 91
Cdd:cd03263 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKT----TTLKMLT-GELRPTsGTAYINGYSIRTDRKAA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVrgndaAMIFQEpmtslNPIFtigrqisEALTC----------HGdIGKAEARAETVRLLEKVRIPNAAsrfDEYPH 161
Cdd:cd03263 74 RQSL-----GYCPQF-----DALF-------DELTVrehlrfyarlKG-LPKSEIKEEVELLLRVLGLTDKA---NKRAR 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 162 QFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIkmLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEA 241
Cdd:cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI--LEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
....*..
gi 636784243 242 VETGTTD 248
Cdd:cd03263 211 RCIGSPQ 217
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
29-251 |
8.92e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 118.65 E-value: 8.92e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDGAITLNGKDVLalpekEMRrvrgNDAAMIFQe 106
Cdd:PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLipSEGKVYVDGLDTSDEENLW-----DIR----NKAGMVFQ- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 pmtslNPIFTIGRQISEALTCHG----DIGKAEARAETVRLLEKVRIpnaaSRFDEY-PHQFSGGMRQRVMIAMALASRP 181
Cdd:PRK13633 93 -----NPDNQIVATIVEEDVAFGpenlGIPPEEIRERVDESLKKVGM----YEYRRHaPHLLSGGQKQRVAIAGILAMRP 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 182 KLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
15-529 |
1.09e-29 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 123.25 E-value: 1.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 15 VRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEKEmr 93
Cdd:COG0488 1 LENLSKSF---GG-RPLLDDVSLSINPGDRIGLVGRNGAGKS----TLLKILA-GELEPDsGEVSIPKGLRIGYLPQE-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 94 rVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGK-------------------AEARAETVrlLEKVRIPNAAs 154
Cdd:COG0488 70 -PPLDDDLTVLDTVLDGDAELRALEAELEELEAKLAEPDEdlerlaelqeefealggweAEARAEEI--LSGLGFPEED- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 155 rFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDvtIQGqILDLIKMLQEEEGmSVLFITHD-------MGVVA 227
Cdd:COG0488 146 -LDRPVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD--LES-IEWLEEFLKNYPG-TVLVVSHDryfldrvATRIL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 228 EIADRTIVMYRG----------------EAVETGTTDDIFH------RGRHPYTRA-------------LLSAVPRlgsm 272
Cdd:COG0488 221 ELDRGKLTLYPGnysayleqraerleqeAAAYAKQQKKIAKeeefirRFRAKARKAkqaqsrikaleklEREEPPR---- 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 273 ADRKWPLRFPvvdtttgerrEPVEVADTVdrrrtpiLEVKNLVTRFDirggllGRKtgaihAVEDVSFNLFQGETLSLVG 352
Cdd:COG0488 297 RDKTVEIRFP----------PPERLGKKV-------LELEGLSKSYG------DKT-----LLDDLSLRIDRGDRIGLIG 348
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 353 ESGCGKSTTGRSITRLVQPNGGSVSLD-----GYdvlsLDavslrrmrrsiqmifQDpFASLNPRMTVGAAVAEpitehg 427
Cdd:COG0488 349 PNGAGKSTLLKLLAGELEPDSGTVKLGetvkiGY----FD---------------QH-QEELDPDKTVLDELRD------ 402
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 428 lGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDV-SIKAqvcnllmdLQQ 506
Cdd:COG0488 403 -GAPGGTEQEVRGYLGRFLFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIeTLEA--------LEE 473
|
570 580
....*....|....*....|....*.
gi 636784243 507 SLNL---AFLFISHDMAVVERVSHRV 529
Cdd:COG0488 474 ALDDfpgTVLLVSHDRYFLDRVATRI 499
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
330-537 |
1.64e-29 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 115.97 E-value: 1.64e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDpfASL 409
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQD--FRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRMTVGAAVAEP--ITEHGlgsGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVS 487
Cdd:cd03292 90 LPDRNVYENVAFAleVTGVP---PREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTG 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 636784243 488 ALDVSIKAQVCNLLmdlqQSLNLA---FLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:cd03292 166 NLDPDTTWEIMNLL----KKINKAgttVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
12-537 |
1.67e-29 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 122.24 E-value: 1.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDWKpVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA----KGSsrIDGAITLNGKDVLAl 87
Cdd:TIGR02633 1 LLEMKGIVKTF---GGVK-ALDGIDLEVRPGECVGLCGENGAGKS----TLMKILSgvypHGT--WDGEIYWSGSPLKA- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 88 peKEMRRVRGNDAAMIFQE-----PMTSLNPIFtIGRQIsealTCHGDIGKAEA---RAEtvRLLEKVRIPnaASRFDEY 159
Cdd:TIGR02633 70 --SNIRDTERAGIVIIHQEltlvpELSVAENIF-LGNEI----TLPGGRMAYNAmylRAK--NLLRELQLD--ADNVTRP 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 160 PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:TIGR02633 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDG 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 240 EAV-----ETGTTDDIfhrgrhpytrallsavprLGSMADRKWPLRFPvvdtttgerREPVEVADTvdrrrtpILEVKNL 314
Cdd:TIGR02633 218 QHVatkdmSTMSEDDI------------------ITMMVGREITSLYP---------HEPHEIGDV-------ILEARNL 263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 315 vTRFDIRGGLLGRktgaihaVEDVSFNLFQGETLSLVGESGCGKsttgrsiTRLVQ--------PNGGSVSLDGYDVLSL 386
Cdd:TIGR02633 264 -TCWDVINPHRKR-------VDDVSFSLRRGEILGVAGLVGAGR-------TELVQalfgaypgKFEGNVFINGKPVDIR 328
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAvsLRRMRRSIQMIFQD-PFASLNPRMTVGaavaEPITEHGLGS--GAQARDKAADL------LERVGLK---PDMmkr 454
Cdd:TIGR02633 329 NP--AQAIRAGIAMVPEDrKRHGIVPILGVG----KNITLSVLKSfcFKMRIDAAAELqiigsaIQRLKVKtasPFL--- 399
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 455 yP-HEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMY 533
Cdd:TIGR02633 400 -PiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIG 477
|
....
gi 636784243 534 LGEI 537
Cdd:TIGR02633 478 EGKL 481
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
5-251 |
1.84e-29 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 120.05 E-value: 1.84e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 5 SSASASPVLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDV 84
Cdd:PRK09452 7 QPSSLSPLVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKT----TVLRLIAGFETPDSGRIMLDGQDI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 LALPeKEMRRVRgndaaMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFS 164
Cdd:PRK09452 79 THVP-AENRHVN-----TVFQS--YALFPHMTVFENVAFGLRMQK-TPAAEITPRVMEALRMVQLEEFAQR---KPHQLS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
|
....*..
gi 636784243 245 GTTDDIF 251
Cdd:PRK09452 227 GTPREIY 233
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
11-236 |
2.18e-29 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 117.27 E-value: 2.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGkdvlalpek 90
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKT-TLLNLIAGFLAPSS---GEITLDG--------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 emRRVRGNDA--AMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMR 168
Cdd:COG4525 69 --VPVTGPGAdrGVVFQK--DALLPWLNVLDNVAFGLRLRG-VPKAERRARAEELLALVGLADFARRR---IWQLSGGMR 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDmgvVAE---IADRTIVM 236
Cdd:COG4525 141 QRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHS---VEEalfLATRLVVM 208
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
334-549 |
2.35e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 117.84 E-value: 2.35e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSlDAVSLRRMRRSIQMIFQDPFASLNPRm 413
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD-KKVKLSDIRKKVGLVFQYPEYQLFEE- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKPDMMK-RYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVS 492
Cdd:PRK13637 100 TIEKDIAFGPINLGL-SEEEIENRVKRAMNIVGLDYEDYKdKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 493 IKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSN 549
Cdd:PRK13637 179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
337-550 |
2.35e-29 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 119.45 E-value: 2.35e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGyDVL--SLDAVSLRRMRRSIQMIFQDpfASLNPRMT 414
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLfdSRKGIFLPPEKRRIGYVFQE--ARLFPHLS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 VGAAVaepitEHGL--GSGAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVS 492
Cdd:TIGR02142 92 VRGNL-----RYGMkrARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 493 IKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:TIGR02142 166 RKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
34-251 |
3.02e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 117.46 E-value: 3.02e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLaKGSSridGAITLNGKDVL--ALPEKEMRRVRGndaaMIFQEPMTSL 111
Cdd:PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTS---GKIIIDGVDITdkKVKLSDIRKKVG----LVFQYPEYQL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 npiF--TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfDEYPHQFSGGMRQRVMIAMALASRPKLLIADEP 189
Cdd:PRK13637 97 ---FeeTIEKDIAFGPINLG-LSEEEIENRVKRAMNIVGLDYEDYK-DKSPFELSGGQKRRVAIAGVVAMEPKILILDEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 190 TTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK13637 172 TAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
6-254 |
7.43e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 121.02 E-value: 7.43e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 6 SASASPVLSVRNLTtaFLVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVL 85
Cdd:COG4988 330 PAAGPPSIELEDVS--FSYPGG-RPALDGLSLTIPPGERVALVGPSGAGKS----TLLNLLLGFLPPYSGSILINGVDLS 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 ALPEKEMRRvrgnDAAMIFQEPMtslnpIF--TIGRQIsealtchgDIGKAEA-RAETVRLLEKVripNAASRFDEYPHQ 162
Cdd:COG4988 403 DLDPASWRR----QIAWVPQNPY-----LFagTIRENL--------RLGRPDAsDEELEAALEAA---GLDEFVAALPDG 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 163 F-----------SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeeEGMSVLFITHDMGVVAEiAD 231
Cdd:COG4988 463 LdtplgeggrglSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLA--KGRTVILITHRLALLAQ-AD 539
|
250 260
....*....|....*....|...
gi 636784243 232 RTIVMYRGEAVETGTTDDIFHRG 254
Cdd:COG4988 540 RILVLDDGRIVEQGTHEELLAKN 562
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
309-546 |
9.18e-29 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 114.07 E-value: 9.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03224 1 LEVENLNAGY-----------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VslRRMRRSIQMIFQDPfaSLNPRMTvgaaVAEPITehgLGSGAQARDKAADLLERV-GLKP---DMMKRYPHEFSGGQR 464
Cdd:cd03224 70 H--ERARAGIGYVPEGR--RIFPELT----VEENLL---LGAYARRRAKRKARLERVyELFPrlkERRKQLAGTLSGGEQ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 544
Cdd:cd03224 139 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
..
gi 636784243 545 EL 546
Cdd:cd03224 218 EL 219
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
334-546 |
9.23e-29 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 121.04 E-value: 9.23e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRmrrSIQMIFQDPF---ASln 410
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRR---QIGVVPQDTFlfsGT-- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 prmtvgaaVAEPITehgLGSGAQARDKAADLLERVGLKpDMMKRYPH-----------EFSGGQRQRICIARALALDPKV 479
Cdd:COG1132 430 --------IRENIR---YGRPDATDEEVEEAAKAAQAH-EFIEALPDgydtvvgergvNLSGGQRQRIAIARALLKDPPI 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 480 IVADESVSALDVSIKAQVcnllmdlQQSLNLAF-----LFISHDMAVVERVsHRVAVMYLGEIVEIGPRAEL 546
Cdd:COG1132 498 LILDEATSALDTETEALI-------QEALERLMkgrttIVIAHRLSTIRNA-DRILVLDDGRIVEQGTHEEL 561
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
13-266 |
1.18e-28 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 114.83 E-value: 1.18e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA---KGSSridGAITLNGKDVLALPE 89
Cdd:COG4559 2 LEAENLS--VRLGG--RTLLDDVSLTLRPGELTAIIGPNGAGKS----TLLKLLTgelTPSS---GEVRLNGRPLAAWSP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEMRRVRgndaAMIFQEpmTSLNPIFT------IGRQisealtcHGDIGKAEARAETVRLLEKVRIPNAASRFdeYPhQF 163
Cdd:COG4559 71 WELARRR----AVLPQH--SSLAFPFTveevvaLGRA-------PHGSSAAQDRQIVREALALVGLAHLAGRS--YQ-TL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALA-------SRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVM 236
Cdd:COG4559 135 SGGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLA-RRGGGVVAVLHDLNLAAQYADRILLL 213
|
250 260 270
....*....|....*....|....*....|
gi 636784243 237 YRGEAVETGTTDDIFhrgrhpyTRALLSAV 266
Cdd:COG4559 214 HQGRLVAQGTPEEVL-------TDELLERV 236
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
308-551 |
1.31e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 115.17 E-value: 1.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGyDVLSLD 387
Cdd:PRK13639 1 ILETRDLKYSYP----------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG-EPIKYD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDP----FASlnprmTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQ 463
Cdd:PRK13639 70 KKSLLEVRKTVGIVFQNPddqlFAP-----TVEEDVAFGPLNLGL-SKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPR 543
Cdd:PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221
|
....*...
gi 636784243 544 AELFSNPQ 551
Cdd:PRK13639 222 KEVFSDIE 229
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
288-546 |
1.47e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 120.26 E-value: 1.47e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 288 TGERREPVEVADTVDRRRTPILEVKNLVTRFDirggllgrkTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITR 367
Cdd:COG4987 313 LDAPPAVTEPAEPAPAPGGPSLELEDVSFRYP---------GAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLR 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 368 LVQPNGGSVSLDGYDVLSLDAVSLRRMrrsIQMIFQDP--FASlnprmTVGAAVAepitehgLGSGAQARDKAADLLERV 445
Cdd:COG4987 384 FLDPQSGSITLGGVDLRDLDEDDLRRR---IAVVPQRPhlFDT-----TLRENLR-------LARPDATDEELWAALERV 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 446 GLKpDMMKRYPH-----------EFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLF 514
Cdd:COG4987 449 GLG-DWLAALPDgldtwlgeggrRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLL 525
|
250 260 270
....*....|....*....|....*....|..
gi 636784243 515 ISHDMAVVERVsHRVAVMYLGEIVEIGPRAEL 546
Cdd:COG4987 526 ITHRLAGLERM-DRILVLEDGRIVEQGTHEEL 556
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
334-549 |
1.59e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 115.18 E-value: 1.59e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlSLDAVSLRRMRRSIQMIFQdpfaslNPRM 413
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD--TSDEENLWDIRNKAGMVFQ------NPDN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITEHG---LGSGA-QARDKAADLLERVGLKPdmMKRY-PHEFSGGQRQRICIARALALDPKVIVADESVSA 488
Cdd:PRK13633 97 QIVATIVEEDVAFGpenLGIPPeEIRERVDESLKKVGMYE--YRRHaPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 489 LDVSIKAQVCNLLMDLQQSLNLAFLFISHDM-AVVErvSHRVAVMYLGEIVEIGPRAELFSN 549
Cdd:PRK13633 175 LDPSGRREVVNTIKELNKKYGITIILITHYMeEAVE--ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
308-582 |
1.64e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 116.10 E-value: 1.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLD----GYDV 383
Cdd:PRK13631 21 ILRVKNLYCVFD------EKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGdiyiGDKK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 384 LSLDAVS---------LRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPItehGLG-SGAQARDKAADLLERVGLKPDMMK 453
Cdd:PRK13631 95 NNHELITnpyskkiknFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV---ALGvKKSEAKKLAKFYLNKMGLDDSYLE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 454 RYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLfISHDMAVVERVSHRVAVMY 533
Cdd:PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFV-ITHTMEHVLEVADEVIVMD 250
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 636784243 534 LGEIVEIGPRAELFSNpQHAYTKKLMAAVPVPDPSRRGIKRNLGTDELK 582
Cdd:PRK13631 251 KGKILKTGTPYEIFTD-QHIINSTSIQVPRVIQVINDLIKKDPKYKKLY 298
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
34-253 |
1.84e-28 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 116.74 E-value: 1.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVL------ALPeKEMRRVrgndaAMIFQE 106
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKT----TLLRAIA-GLERPDsGRIRLGGEVLQdsargiFLP-PHRRRI-----GYVFQE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 PmtSLNPiftigrqiseALTCHGDIGKAEARAetvrllekvRIPNAASRFDE-------------YPHQFSGGMRQRVMI 173
Cdd:COG4148 86 A--RLFP----------HLSVRGNLLYGRKRA---------PRAERRISFDEvvellgighlldrRPATLSGGERQRVAI 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 174 AMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHR 253
Cdd:COG4148 145 GRALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSR 224
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
10-561 |
1.87e-28 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 119.34 E-value: 1.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFlvdgdwkPVVR---DVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDV-L 85
Cdd:PRK10762 2 QALLQLKGIDKAF-------PGVKalsGAALNVYPGRVMALVGENGAGKS----TMMKVLTGIYTRDAGSILYLGKEVtF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 ALPekemrrvRGNDAA---MIFQEpmtsLN--PIFTI------GRQISEALtchGDIGKAEARAETVRLLEKVRIPNAAS 154
Cdd:PRK10762 71 NGP-------KSSQEAgigIIHQE----LNliPQLTIaeniflGREFVNRF---GRIDWKKMYAEADKLLARLNLRFSSD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 155 RFdeyPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIADRTI 234
Cdd:PRK10762 137 KL---VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVT 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 235 VMYRGE-----AVETGTTDDIFHRgrhpytrallsavprlgsMADRKWPLRFPVVDTTTGERRepvevadtvdrrrtpiL 309
Cdd:PRK10762 213 VFRDGQfiaerEVADLTEDSLIEM------------------MVGRKLEDQYPRLDKAPGEVR----------------L 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 310 EVKNLvtrfdirggllgrkTGAihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL--- 386
Cdd:PRK10762 259 KVDNL--------------SGP--GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRspq 322
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAvslrrMRRSIQMIFQDpfaslnpR----MTVGAAVAEPIT-------EHGLGSGAQARDKAA--DLLERVGLKPDMMK 453
Cdd:PRK10762 323 DG-----LANGIVYISED-------RkrdgLVLGMSVKENMSltalryfSRAGGSLKHADEQQAvsDFIRLFNIKTPSME 390
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 454 RYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMY 533
Cdd:PRK10762 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMH 469
|
570 580
....*....|....*....|....*...
gi 636784243 534 LGEIveigpRAElFSNPQhAYTKKLMAA 561
Cdd:PRK10762 470 EGRI-----SGE-FTREQ-ATQEKLMAA 490
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
15-259 |
1.93e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 114.37 E-value: 1.93e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 15 VRNLTTAFLVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRI--DGAITLNGKDVLALPEKEM 92
Cdd:PRK14246 10 VFNISRLYLYIND-KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIkvDGKVLYFGKDIFQIDAIKL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPmtslNPI--FTIGRQISEALTCHGDIGKAEARAETVRLLEKVRI-PNAASRFDEYPHQFSGGMRQ 169
Cdd:PRK14246 89 RK----EVGMVFQQP----NPFphLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLwKEVYDRLNSPASQLSGGQQQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEegMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDD 249
Cdd:PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238
|
250
....*....|
gi 636784243 250 IFHRGRHPYT 259
Cdd:PRK14246 239 IFTSPKNELT 248
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
47-260 |
2.71e-28 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 115.67 E-value: 2.71e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 47 IVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPeKEMRRVrgndaAMIFQEpmTSLNPIFTIGRQISEAL 125
Cdd:TIGR01187 1 LLGPSGCGKT----TLLRLLA-GFEQPDsGSIMLDGEDVTNVP-PHLRHI-----NMVFQS--YALFPHMTVEENVAFGL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 126 TCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLI 205
Cdd:TIGR01187 68 KMRK-VPRAEIKPRVLEALRLVQLEEFADR---KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 206 KMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFhrgRHPYTR 260
Cdd:TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY---EEPANL 195
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
310-532 |
3.68e-28 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 112.24 E-value: 3.68e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 310 EVKNLVTRFDIRggllgrktgaiHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlsldav 389
Cdd:cd03235 1 EVEDLTVSYGGH-----------PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL------ 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 390 slRRMRRSIQMIFQDPFASLNPRMTVGAAVAEPITEH-GLGSGAQARDKAA--DLLERVGLKpDMMKRYPHEFSGGQRQR 466
Cdd:cd03235 64 --EKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHkGLFRRLSKADKAKvdEALERVGLS-ELADRQIGELSGGQQQR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQsLNLAFLFISHDMAVVERVSHRVAVM 532
Cdd:cd03235 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLL 205
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
10-251 |
5.39e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 113.55 E-value: 5.39e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDGaITLNGKDVlal 87
Cdd:PRK13632 5 SVMIKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLkpQSGEIKIDG-ITISKENL--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 88 peKEMRRVRGndaaMIFQEPMTSLnpiftIGrqiseaLTCHGDIG---------KAEARAETVRLLEKVRIPNAasrFDE 158
Cdd:PRK13632 79 --KEIRKKIG----IIFQNPDNQF-----IG------ATVEDDIAfglenkkvpPKKMKDIIDDLAKKVGMEDY---LDK 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 159 YPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAeIADRTIVMYR 238
Cdd:PRK13632 139 EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSE 217
|
250
....*....|...
gi 636784243 239 GEAVETGTTDDIF 251
Cdd:PRK13632 218 GKLIAQGKPKEIL 230
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
335-538 |
6.01e-28 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 111.19 E-value: 6.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlsldaVSLRRMRRSIQMIFQDPFASLnprmt 414
Cdd:cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP------IKAKERRKSIGYVMQDVDYQL----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 VGAAVAEPITEhGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIK 494
Cdd:cd03226 85 FTDSVREELLL-GLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 636784243 495 AQVCNLLMDLQQSLNlAFLFISHDMAVVERVSHRVAVMYLGEIV 538
Cdd:cd03226 163 ERVGELIRELAAQGK-AVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
334-551 |
7.53e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 113.36 E-value: 7.53e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDPfaslnPRM 413
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNP-----DNQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITeHGLGSGAQARDK----AADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:PRK13640 97 FVGATVGDDVA-FGLENRAVPRPEmikiVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVErVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:PRK13640 175 DPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFSKVE 235
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
306-554 |
9.36e-28 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 111.61 E-value: 9.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:COG0410 1 MPMLEVENLHAGY-----------GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAVslRRMRRSI------QMIFqdpfaslnPRMTV------GAAVAepiteHGLGSGAQARDKAADLLERvgLKpDMMK 453
Cdd:COG0410 70 LPPH--RIARLGIgyvpegRRIF--------PSLTVeenlllGAYAR-----RDRAEVRADLERVYELFPR--LK-ERRR 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 454 RYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMY 533
Cdd:COG0410 132 QRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLE 210
|
250 260
....*....|....*....|...
gi 636784243 534 LGEIVEIGPRAELFSNP--QHAY 554
Cdd:COG0410 211 RGRIVLEGTAAELLADPevREAY 233
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
34-239 |
1.19e-27 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 110.85 E-value: 1.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVmPGETVAIVGESGSGKSvtslSIMRLLA------KGSSRIDGAITLNGKDVLALPEKEmRRVrgndaAMIFQEp 107
Cdd:cd03297 16 KIDFDL-NEEVTGIFGASGAGKS----TLLRCIAglekpdGGTIVLNGTVLFDSRKKINLPPQQ-RKI-----GLVFQQ- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 108 mTSLNPIFTIGRQISEALTCHGDigkAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMALASRPKLLIAD 187
Cdd:cd03297 84 -YALFPHLNVRENLAFGLKRKRN---REDRISVDELLDLLGLDHLLNR---YPAQLSGGEKQRVALARALAAQPELLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 188 EPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
13-245 |
1.29e-27 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 110.45 E-value: 1.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLA------ 86
Cdd:cd03269 1 LEVENVTKRF---GR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS----GEVLFDGKPLDIaarnri 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 --LPEKemrrvRGndaamifqepmtsLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRFDEyphQFS 164
Cdd:cd03269 73 gyLPEE-----RG-------------LYPKMKVIDQLVYLAQLKG-LKKEEARRRIDEWLERLELSEYANKRVE---ELS 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVET 244
Cdd:cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA-RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
.
gi 636784243 245 G 245
Cdd:cd03269 210 G 210
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
13-245 |
1.49e-27 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 110.54 E-value: 1.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAKGSSRIDGAITLNGKDVLALPEKEM 92
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTT----LRMLAGLLEPDAGFATVDGFDVVKEPAEAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGNDAAMIFQEPMTSLNPIFTIGRqisealtCHGdIGKAEARAETVRLLEKVRIPNAASRFDEyphQFSGGMRQRVM 172
Cdd:cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAG-------LYG-LKGDELTARLEELADRLGMEELLDRRVG---GFSTGMRQKVA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
29-251 |
1.74e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 112.20 E-value: 1.74e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRiDGAITLNGkdvLALPEKEMRRVRgNDAAMIFQEPM 108
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-NSKITVDG---ITLTAKTVWDIR-EKVGIVFQNPD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLnpiftIGRQISEALTcHGDIGKAEARAETVRLLEKVRIPNAASRF-DEYPHQFSGGMRQRVMIAMALASRPKLLIAD 187
Cdd:PRK13640 95 NQF-----VGATVGDDVA-FGLENRAVPRPEMIKIVRDVLADVGMLDYiDSEPANLSGGQKQRVAIAGILAVEPKIIILD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 188 EPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGvVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK13640 169 ESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDDGKLLAQGSPVEIF 231
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
334-558 |
1.84e-27 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 110.78 E-value: 1.84e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDAVSLRRMRRSIQMIFQDPFaslnprm 413
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV---RDYTLASLRRQIGLVSQDVF------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITEHGLGSG-AQARD--KAADLLERVGLKPDMMKRYPHE----FSGGQRQRICIARALALDPKVIVADESV 486
Cdd:cd03251 87 LFNDTVAENIAYGRPGATrEEVEEaaRAANAHEFIMELPEGYDTVIGErgvkLSGGQRQRIAIARALLKDPPILILDEAT 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 487 SALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRAELFSnpQHAYTKKL 558
Cdd:cd03251 167 SALDTESERLVQAALERLMK--NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLA--QGGVYAKL 233
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
33-240 |
2.20e-27 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 110.03 E-value: 2.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 33 RDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM---RRVRGndaaMIFQEpmT 109
Cdd:TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKT----TLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLpllRRRIG----VVFQD--F 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 SLNPIFTIGRQISEALTCHGDiGKAEARAETVRLLEKVRIPNaasRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEP 189
Cdd:TIGR02673 89 RLLPDRTVYENVALPLEVRGK-KEREIQRRVGAALRQVGLEH---KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 636784243 190 TTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:TIGR02673 165 TGNLDPDLSERILDLLKRLN-KRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
337-554 |
2.75e-27 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 110.32 E-value: 2.75e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDavsLRRMRRSIQMIFQDP--FAslnprmt 414
Cdd:cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN---LRWLRSQIGLVSQEPvlFD------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 vgAAVAEPITeHGLGSGAQARD----KAADLLERVGLKPD----MMKRYPHEFSGGQRQRICIARALALDPKVIVADESV 486
Cdd:cd03249 91 --GTIAENIR-YGKPDATDEEVeeaaKKANIHDFIMSLPDgydtLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 487 SALDVSIKAQVcnllmdlQQSLNLAF-----LFISHDMAVVeRVSHRVAVMYLGEIVEIGPRAELFSNPQHAY 554
Cdd:cd03249 168 SALDAESEKLV-------QEALDRAMkgrttIVIAHRLSTI-RNADLIAVLQNGQVVEQGTHDELMAQKGVYA 232
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
330-560 |
3.48e-27 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 109.92 E-value: 3.48e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDavSLRRMRRSI------QMIFq 403
Cdd:TIGR03410 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP--PHERARAGIayvpqgREIF- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 404 dpfaslnPRMTVgaavaepitEHGLGSGAQARDKA-----ADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPK 478
Cdd:TIGR03410 88 -------PRLTV---------EENLLTGLAALPRRsrkipDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 479 VIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELfsnpQHAYTKKL 558
Cdd:TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL----DEDKVRRY 227
|
..
gi 636784243 559 MA 560
Cdd:TIGR03410 228 LA 229
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
306-529 |
3.55e-27 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 109.91 E-value: 3.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllgrKTGAIHA--VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV 383
Cdd:PRK11629 3 KILLQCDNLCKRY---------QEGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 384 LSLDAVSLRRMR-RSIQMIFQdpFASLNPRMTVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKPDMMKRyPHEFSGG 462
Cdd:PRK11629 74 SKLSSAAKAELRnQKLGFIYQ--FHHLLPDFTALENVAMPLLIGKKKP-AEINSRALEMLAAVGLEHRANHR-PSELSGG 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 463 QRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRV 529
Cdd:PRK11629 150 ERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
327-550 |
4.80e-27 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 112.63 E-value: 4.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 327 RKT--GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSlrrmrRSIQMIFQD 404
Cdd:PRK11650 10 RKSydGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD-----RDIAMVFQN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 405 pFAsLNPRMTVGAAVAEPITEHGLGSGAQAR--DKAADLLErvgLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVA 482
Cdd:PRK11650 85 -YA-LYPHMSVRENMAYGLKIRGMPKAEIEErvAEAARILE---LEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 483 DESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMavVE--RVSHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ--VEamTLADRVVVMNGGVAEQIGTPVEVYEKP 226
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
29-246 |
5.78e-27 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 109.63 E-value: 5.78e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRGndaaMIFQEpm 108
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKS----TILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG----VVPQD-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tslNPIF--TIGRQIsealtCHGDIGKAE----ARAETVRLLEKV-RIPNA-ASRFDEYPHQFSGGMRQRVMIAMALASR 180
Cdd:cd03253 84 ---TVLFndTIGYNI-----RYGRPDATDeeviEAAKAAQIHDKImRFPDGyDTIVGERGLKLSGGEKQRVAIARAILKN 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 181 PKLLIADEPTTALDVT----IQGQILDLIKmlqeeeGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGT 246
Cdd:cd03253 156 PPILLLDEATSALDTHtereIQAALRDVSK------GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGT 218
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
334-548 |
6.25e-27 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 109.50 E-value: 6.25e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRR-----------MRRSIQmif 402
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRqvgvvlqenvlFNRSIR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 403 qDPFASLNPRMTVG--------AAVAEPITEHGLGSGAQARDKAADLlervglkpdmmkryphefSGGQRQRICIARALA 474
Cdd:cd03252 94 -DNIALADPGMSMErvieaaklAGAHDFISELPEGYDTIVGEQGAGL------------------SGGQRQRIAIARALI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 475 LDPKVIVADESVSALDVSIKAQVCNLLMDLqqSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRAELFS 548
Cdd:cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDI--CAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLA 225
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
334-551 |
6.76e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 110.88 E-value: 6.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLdGYDVLS--LDAVSLRRMRRSIQMIFQDPFASLNP 411
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITagKKNKKLKPLRKKVGIVFQFPEHQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 RmTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDV 491
Cdd:PRK13634 101 E-TVEKDICFGPMNFGV-SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 492 SIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:PRK13634 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
335-569 |
6.86e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 110.57 E-value: 6.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQP-----NGGSVSLDGYDVLSLDAVslRRMRRSIQMIFQDPfasl 409
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGRSIFNYRDV--LEFRRRVGMLFQRP---- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NP-RMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGL---KPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADES 485
Cdd:PRK14271 111 NPfPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwdaVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEP 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSLNLafLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAVP-- 563
Cdd:PRK14271 191 TSALDPTTTEKIEEFIRSLADRLTV--IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLSgd 268
|
....*.
gi 636784243 564 VPDPSR 569
Cdd:PRK14271 269 VKDAKR 274
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
335-520 |
7.48e-27 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 108.34 E-value: 7.48e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPN---GGSVSLDGYDVLSLDAvslrrMRRSIQMIFQDPFasLNP 411
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPA-----EQRRIGILFQDDL--LFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 RMTVGA--AVAEPiteHGLGsGAQARDKAADLLERVGLkPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:COG4136 90 HLSVGEnlAFALP---PTIG-RAQRRARVEQALEEAGL-AGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKL 164
|
170 180 190
....*....|....*....|....*....|.
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMA 520
Cdd:COG4136 165 DAALRAQFREFVFEQIRQRGIPALLVTHDEE 195
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
10-259 |
8.12e-27 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 109.48 E-value: 8.12e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRL--LAKGSSrIDGAITLNGKDVLAl 87
Cdd:PRK14239 3 EPILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPEVT-ITGSIVYNGHNIYS- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 88 PEKEMRRVRgNDAAMIFQEPmtslNPI-FTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPN-AASRFDEYPHQFSG 165
Cdd:PRK14239 77 PRTDTVDLR-KEIGMVFQQP----NPFpMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDeVKDRLHDSALGLSG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 166 GMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMsvLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTRSMQQASRISDRTGFFLDGDLIEYN 229
|
250
....*....|....
gi 636784243 246 TTDDIFHRGRHPYT 259
Cdd:PRK14239 230 DTKQMFMNPKHKET 243
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
334-546 |
1.03e-26 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 114.47 E-value: 1.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMrrsIQMIFQDP--FAslnp 411
Cdd:COG4988 352 ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQ---IAWVPQNPylFA---- 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 rmtvgAAVAEPITehgLGSGAQARDKAADLLERVGLKpDMMKRYPHEF-----------SGGQRQRICIARALALDPKVI 480
Cdd:COG4988 425 -----GTIRENLR---LGRPDASDEELEAALEAAGLD-EFVAALPDGLdtplgeggrglSGGQAQRLALARALLRDAPLL 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 481 VADESVSALDVSIKAQVCNLLMDLQQSLNLafLFISHDMAVVERVSHRVaVMYLGEIVEIGPRAEL 546
Cdd:COG4988 496 LLDEPTAHLDAETEAEILQALRRLAKGRTV--ILITHRLALLAQADRIL-VLDDGRIVEQGTHEEL 558
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
10-250 |
1.17e-26 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 108.53 E-value: 1.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPE 89
Cdd:COG0410 1 MPMLEVENLHAGY---GG-IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRS----GSIRFDGEDITGLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEMRRvRGndaamIFQEPMtslnpiftiGRQISEALT----------CHGDIGKAEARAETV-----RLLEkvRIPNAAS 154
Cdd:COG0410 73 HRIAR-LG-----IGYVPE---------GRRIFPSLTveenlllgayARRDRAEVRADLERVyelfpRLKE--RRRQRAG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 155 rfdeyphQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTI 234
Cdd:COG0410 136 -------TLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLN-REGVTILLVEQNARFALEIADRAY 207
|
250
....*....|....*.
gi 636784243 235 VMYRGEAVETGTTDDI 250
Cdd:COG0410 208 VLERGRIVLEGTAAEL 223
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
308-546 |
1.23e-26 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 110.20 E-value: 1.23e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlsLD 387
Cdd:COG4152 1 MLELKGLTKRF-----------GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEP---LD 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRM------RrsiqmifqdpfaSLNPRMTVGAAV---AEpitEHGLgSGAQARDKAADLLERVGLKPDMMKRYpHE 458
Cdd:COG4152 67 PEDRRRIgylpeeR------------GLYPKMKVGEQLvylAR---LKGL-SKAEAKRRADEWLERLGLGDRANKKV-EE 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 459 FSGGQRQRICIARALALDPKVIVADESVSALD-VSIkaqvcNLLMDLQQSLNLA---FLFISHDMAVVERVSHRVAVMYL 534
Cdd:COG4152 130 LSKGNQQKVQLIAALLHDPELLILDEPFSGLDpVNV-----ELLKDVIRELAAKgttVIFSSHQMELVEELCDRIVIINK 204
|
250
....*....|..
gi 636784243 535 GEIVEIGPRAEL 546
Cdd:COG4152 205 GRKVLSGSVDEI 216
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
344-541 |
1.24e-26 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 107.96 E-value: 1.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 344 QGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVslrrmRRSIQMIFQDP--FASLNPRMTVGAAVAE 421
Cdd:cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA-----DRPVSMLFQENnlFAHLTVEQNVGLGLSP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 422 pitehGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLL 501
Cdd:cd03298 98 -----GLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 636784243 502 MDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03298 172 LDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
5-250 |
1.29e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 113.57 E-value: 1.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 5 SSASASPVLSVRNLTTaflvdgdwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKD 83
Cdd:COG1129 249 AAAPGEVVLEVEGLSV--------GGVVRDVSFSVRAGEILGIAGLVGAGRT----ELARALF-GADPADsGEIRLDGKP 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 V------------LAL-PEKemRRVRGndaamifqepmtsLNPIFTIGRQIS----EALTCHGDIGKAEARAETVRLLEK 146
Cdd:COG1129 316 VrirsprdairagIAYvPED--RKGEG-------------LVLDLSIRENITlaslDRLSRGGLLDRRRERALAEEYIKR 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 147 VRIpNAASrfdeyPHQ----FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHD 222
Cdd:COG1129 381 LRI-KTPS-----PEQpvgnLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA-AEGKAVIVISSE 453
|
250 260
....*....|....*....|....*...
gi 636784243 223 MGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:COG1129 454 LPELLGLSDRILVMREGRIVGELDREEA 481
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
13-222 |
1.43e-26 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 107.57 E-value: 1.43e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaflVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSRIDGAITLNGKDVLALPeKEM 92
Cdd:COG4136 2 LSLENLT----ITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKS-TLLAAIAGTLSPAFSASGEVLLNGRRLTALP-AEQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVrgndaAMIFQEPMtsLNPIFTIGRQISEALTchGDIGKAEARAETVRLLEKVripNAASRFDEYPHQFSGGMRQRVM 172
Cdd:COG4136 76 RRI-----GILFQDDL--LFPHLSVGENLAFALP--PTIGRAQRRARVEQALEEA---GLAGFADRDPATLSGGQRARVA 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHD 222
Cdd:COG4136 144 LLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHD 193
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
335-565 |
1.51e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 109.53 E-value: 1.51e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV-LSLDAVSLRRMRRSIQMIFQDPFASLnprm 413
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItPETGNKNLKKLRKKVSLVFQFPEAQL---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 tVGAAVAEPITEHGLGSGA---QARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALD 490
Cdd:PRK13641 99 -FENTVLKDVEFGPKNFGFsedEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 491 VSIKAQVCNLLMDLQQSLNLAFLfISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQhaYTKKLMAAVPVP 565
Cdd:PRK13641 178 PEGRKEMMQLFKDYQKAGHTVIL-VTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE--WLKKHYLDEPAT 249
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
292-546 |
1.65e-26 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 114.29 E-value: 1.65e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 292 REPVEVADTVDRRRTP-----ILEVKNLVTRFDIRGGLLGRKTGaihaVEDVSFNLFQGETLSLVGESGCGKSTTGRSIT 366
Cdd:PRK13657 307 EEFFEVEDAVPDVRDPpgaidLGRVKGAVEFDDVSFSYDNSRQG----VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 367 RLVQPNGGSVSLDGYDVLSldaVSLRRMRRSIQMIFQDP--FA-SLNPRMTVGAAVAEPITEHGLGSGAQARD----KAA 439
Cdd:PRK13657 383 RVFDPQSGRILIDGTDIRT---VTRASLRRNIAVVFQDAglFNrSIEDNIRVGRPDATDEEMRAAAERAQAHDfierKPD 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 440 DLLERVGLKPDMMkryphefSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDM 519
Cdd:PRK13657 460 GYDTVVGERGRQL-------SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRL 530
|
250 260
....*....|....*....|....*..
gi 636784243 520 AVVeRVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:PRK13657 531 STV-RNADRILVFDNGRVVESGSFDEL 556
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
335-553 |
1.73e-26 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 107.94 E-value: 1.73e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDAVSLRRMrrsiqMIFQDpfASLNPRMT 414
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI---TEPGPDRM-----VVFQN--YSLLPWLT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 VGAAVAEPITE--HGLGSGAQaRDKAADLLERVGLKPDMMKRyPHEFSGGQRQRICIARALALDPKVIVADESVSALDVS 492
Cdd:TIGR01184 71 VRENIALAVDRvlPDLSKSER-RAIVEEHIALVGLTEAADKR-PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 493 IKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVM------YLGEIVEIG-----PRAELFSNPQHA 553
Cdd:TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLtngpaaNIGQILEVPfprprDRLEVVEDPSYY 220
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
12-254 |
1.97e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 109.05 E-value: 1.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKE 91
Cdd:PRK13650 4 IIEVKNLTFKYKEDQE-KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES----GQIIIDGDLLTEENVWD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGndaaMIFQEPMTSlnpiF---TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMR 168
Cdd:PRK13650 79 IRHKIG----MVFQNPDNQ----FvgaTVEDDVAFGLENKG-IPHEEMKERVNEALELVGMQDFKER---EPARLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAeIADRTIVMYRGEAVETGTTD 248
Cdd:PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPR 225
|
....*.
gi 636784243 249 DIFHRG 254
Cdd:PRK13650 226 ELFSRG 231
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
31-242 |
1.99e-26 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 106.96 E-value: 1.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDvlaLPEKEMRRVrgndAAMIFQEPMTS 110
Cdd:cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKT----TLAKILAGLIKESSGSILLNGKP---IKAKERRKS----IGYVMQDVDYQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 LnpiF--TIGRQISEALtchGDIGKAEARAETVrlLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALASRPKLLIADE 188
Cdd:cd03226 84 L---FtdSVREELLLGL---KELDAGNEQAETV--LKDLDLYALK---ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 636784243 189 PTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAV 242
Cdd:cd03226 153 PTSGLDYKNMERVGELIRELA-AQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
32-251 |
2.10e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 109.10 E-value: 2.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDG-AITLNGKDvlalpeKEMRRVRgNDAAMIFQEPM 108
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLkpTTGTVTVDDiTITHKTKD------KYIRPVR-KRIGMVFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLnpiF--TIGRQISEALTCHG-DIGKAEARAetVRLLEKVRIPNAAsrFDEYPHQFSGGMRQRVMIAMALASRPKLLI 185
Cdd:PRK13646 96 SQL---FedTVEREIIFGPKNFKmNLDEVKNYA--HRLLMDLGFSRDV--MSQSPFQMSGGQMRKIAIVSILAMNPDIIV 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 186 ADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
29-246 |
2.18e-26 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 113.72 E-value: 2.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKS-VTSLsIMRLLAKGSsridGAITLNGKDVLALPEKEMRR-VrgndaAMIFQE 106
Cdd:COG1132 353 RPVLKDISLTIPPGETVALVGPSGSGKStLVNL-LLRFYDPTS----GRILIDGVDIRDLTLESLRRqI-----GVVPQD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 PMtslnpIF--TIGRQISealtchgdIGKAEARAETVRllEKVRIPNAASRFDEYPHQF-----------SGGMRQRVMI 173
Cdd:COG1132 423 TF-----LFsgTIRENIR--------YGRPDATDEEVE--EAAKAAQAHEFIEALPDGYdtvvgergvnlSGGQRQRIAI 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 174 AMALASRPKLLIADEPTTALDV----TIQGQILDLIKmlqeeeGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGT 246
Cdd:COG1132 488 ARALLKDPPILILDEATSALDTeteaLIQEALERLMK------GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGT 557
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
306-550 |
3.66e-26 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 107.77 E-value: 3.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirGGLLgrktgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV-- 383
Cdd:PRK11300 3 QPLLSVSGLMMRF---GGLL--------AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIeg 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 384 LSLDAVSLRRMRRSIQMIfqdpfaSLNPRMTV--GAAVAEpiteH-----GLGSG-----------AQARDKAADLLERV 445
Cdd:PRK11300 72 LPGHQIARMGVVRTFQHV------RLFREMTVieNLLVAQ----HqqlktGLFSGllktpafrraeSEALDRAATWLERV 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 446 GLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERV 525
Cdd:PRK11300 142 GLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI 220
|
250 260
....*....|....*....|....*
gi 636784243 526 SHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:PRK11300 221 SDRIYVVNQGTPLANGTPEEIRNNP 245
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
330-538 |
6.70e-26 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 106.11 E-value: 6.70e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQMIFQDPFASL 409
Cdd:PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NprMTVGAAVAEPITEHGlGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:PRK10908 93 D--RTVYDNVAIPLIIAG-ASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 636784243 490 DVSIKAQVCNLLMDLQQsLNLAFLFISHDMAVVERVSHRVAVMYLGEIV 538
Cdd:PRK10908 169 DDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
13-245 |
8.51e-26 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 105.38 E-value: 8.51e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKeM 92
Cdd:cd03268 1 LKTNDLTKTY---GK-KRVLDDISLHVKKGEIYGFLGPNGAGKT-TTMKIILGLIKPDS---GEITFDGKSYQKNIEA-L 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVrgndAAMIFQepmtslnPIFTIGRQISEALTCHGDI-GKAEARAEtvRLLEKVRIPNAAsrfDEYPHQFSGGMRQRV 171
Cdd:cd03268 72 RRI----GALIEA-------PGFYPNLTARENLRLLARLlGIRKKRID--EVLDVVGLKDSA---KKKVKGFSLGMKQRL 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR-DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
30-249 |
1.01e-25 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 106.08 E-value: 1.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRGndaaMIFQEPMt 109
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKS----TVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG----LVSQEPV- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 slnpIF--TIGRQISealtchgdIGKAEARAETVRllEKVRIPNAASRFDEYPHQF-----------SGGMRQRVMIAMA 176
Cdd:cd03249 88 ----LFdgTIAENIR--------YGKPDATDEEVE--EAAKKANIHDFIMSLPDGYdtlvgergsqlSGGQKQRIAIARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 177 LASRPKLLIADEPTTALDVTIQGQI---LDLIKmlqeeEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDD 249
Cdd:cd03249 154 LLRNPKILLLDEATSALDAESEKLVqeaLDRAM-----KGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDE 223
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
332-547 |
1.15e-25 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 105.39 E-value: 1.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 332 IHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMrrsIQMIFQDPFasLNP 411
Cdd:cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM---IGVVLQDTF--LFS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 RmtvgaAVAEPITehgLGSGAQARDKAADLLERVGLKPDMMKR---YPHE-------FSGGQRQRICIARALALDPKVIV 481
Cdd:cd03254 91 G-----TIMENIR---LGRPNATDEEVIEAAKEAGAHDFIMKLpngYDTVlgenggnLSQGERQLLAIARAMLRDPKILI 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 482 ADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRAELF 547
Cdd:cd03254 163 LDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELL 225
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
13-266 |
1.36e-25 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 106.25 E-value: 1.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKEM 92
Cdd:PRK11231 3 LRTENLTVGY---GT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS----GTVFLGDKPISMLSSRQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPMT----SLNPIFTIGRqiSEALTCHGDIGkAEARAETVRLLEKVRIPNAASRFDEyphQFSGGMR 168
Cdd:PRK11231 75 AR----RLALLPQHHLTpegiTVRELVAYGR--SPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRRLT---DLSGGQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTD 248
Cdd:PRK11231 145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN-TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPE 223
|
250
....*....|....*...
gi 636784243 249 DIFhrgrhpyTRALLSAV 266
Cdd:PRK11231 224 EVM-------TPGLLRTV 234
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
9-240 |
1.59e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 103.67 E-value: 1.59e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTtaflvdgdWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALP 88
Cdd:cd03215 1 GEPVLEVRGLS--------VKGAVRDVSFEVRAGEIVGIAGLVGNGQT----ELAEALFGLRPPASGEITLDGKPVTRRS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKEMRRvRGndAAMIFQEPM-TSLNPIFTIGRQISealtchgdigkaearaetvrllekvripnaasrfdeYPHQFSGGM 167
Cdd:cd03215 69 PRDAIR-AG--IAYVPEDRKrEGLVLDLSVAENIA------------------------------------LSSLLSGGN 109
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSELDELLGLCDRILVMYEGR 181
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
34-240 |
2.76e-25 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 104.03 E-value: 2.76e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKE---MRRVRGndaaMIFQEpmTS 110
Cdd:cd03292 19 GINISISAGEFVFLVGPSGAGKS----TLLKLIYKEELPTSGTIRVNGQDVSDLRGRAipyLRRKIG----VVFQD--FR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 LNPIFTIGRQISEALTCHGDIGKaEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:cd03292 89 LLPDRNVYENVAFALEVTGVPPR-EIRKRVPAALELVGL---SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 636784243 191 TALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd03292 165 GNLDPDTTWEIMNLLKKIN-KAGTTVVVATHAKELVDTTRHRVIALERGK 213
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
13-264 |
3.27e-25 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 107.11 E-value: 3.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLAlpekem 92
Cdd:PRK11432 7 VVLKNITKRF---GS-NTVIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVAGLEKPTEGQIFIDGEDVTH------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGNDAAMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAetvRLLEKVRIPNAASRFDEYPHQFSGGMRQRVM 172
Cdd:PRK11432 73 RSIQQRDICMVFQS--YALFPHMSLGENVGYGLKMLG-VPKEERKQ---RVKEALELVDLAGFEDRYVDQISGGQQQRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFh 252
Cdd:PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY- 225
|
250
....*....|..
gi 636784243 253 rgRHPYTRALLS 264
Cdd:PRK11432 226 --RQPASRFMAS 235
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
34-254 |
4.10e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 105.49 E-value: 4.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDGAITLNGKDvlalpEKEMRRVRgNDAAMIFQEPMTSL 111
Cdd:PRK13634 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLqpTSGTVTIGERVITAGKK-----NKKLKPLR-KKVGIVFQFPEHQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 npiF--TIGRQIsealtCHGDIG----KAEARAETVRLLEKVRIPnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLLI 185
Cdd:PRK13634 99 ---FeeTVEKDI-----CFGPMNfgvsEEDAKQKAREMIELVGLP--EELLARSPFELSGGQMRRVAIAGVLAMEPEVLV 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 186 ADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRG 254
Cdd:PRK13634 169 LDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
9-545 |
4.13e-25 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 109.23 E-value: 4.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAFlvdgdwkPVVR---DVSFDVMPGETVAIVGESGSGKSvTSLSIMrllaKGSSRID-GAITLNGKdv 84
Cdd:PRK11288 1 SSPYLSFDGIGKTF-------PGVKaldDISFDCRAGQVHALMGENGAGKS-TLLKIL----SGNYQPDaGSILIDGQ-- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 lalpekEMRRVRGNDA-----AMIFQEpmTSLNPIFTIgrqiSEAL------TCHGDIGKAEARAETVRLLEKVRI---P 150
Cdd:PRK11288 67 ------EMRFASTTAAlaagvAIIYQE--LHLVPEMTV----AENLylgqlpHKGGIVNRRLLNYEAREQLEHLGVdidP 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 151 NAASRFdeyphqFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIA 230
Cdd:PRK11288 135 DTPLKY------LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALC 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 231 DRTIVmyrgeavetgttddiFHRGRHPYTRALLSAVPR---LGSMADRkwplrfpvvdtttgerrepvEVADTVDRRRTP 307
Cdd:PRK11288 208 DAITV---------------FKDGRYVATFDDMAQVDRdqlVQAMVGR--------------------EIGDIYGYRPRP 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVknlvtRFDIRGgLLGRKTGaihavEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlslD 387
Cdd:PRK11288 253 LGEV-----RLRLDG-LKGPGLR-----EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG------K 315
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQM-------------IFQdpfaslnprmtvGAAVAEPIT----EHGLGSG-----AQARDKAADLLERV 445
Cdd:PRK11288 316 PIDIRSPRDAIRAgimlcpedrkaegIIP------------VHSVADNINisarRHHLRAGclinnRWEAENADRFIRSL 383
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 446 GLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERV 525
Cdd:PRK11288 384 NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGV 462
|
570 580
....*....|....*....|
gi 636784243 526 SHRVAVMYLGEIVEIGPRAE 545
Cdd:PRK11288 463 ADRIVVMREGRIAGELAREQ 482
|
|
| PhnT |
TIGR03258 |
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding ... |
31-260 |
4.65e-25 |
|
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Pssm-ID: 132302 [Multi-domain] Cd Length: 362 Bit Score: 107.00 E-value: 4.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAK--GSSRIDGAITLNGKDVLALPEKEmrrvRGndAAMIFQEpm 108
Cdd:TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKT----TLLRAIAGfvKAAGLTGRIAIADRDLTHAPPHK----RG--LALLFQN-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLNPIFTIGRQISEALTCHgDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMALASRPKLLIADE 188
Cdd:TIGR03258 88 YALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAH---LPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 189 PTTALDVTIQGQILDLIKMLQEE-EGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFhrgRHPYTR 260
Cdd:TIGR03258 164 PLSALDANIRANMREEIAALHEElPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY---DAPADG 233
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
8-251 |
4.81e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 106.09 E-value: 4.81e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFlvdgDWKP-----VVRDVSFDVMPGETVAIVGESGSGKS--VTSLSIMRLLAKGSSRIdGAITLN 80
Cdd:PRK13631 17 SDDIILRVKNLYCVF----DEKQenelvALNNISYTFEKNKIYFIIGNSGSGKStlVTHFNGLIKSKYGTIQV-GDIYIG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 81 GKDVLALPE-----------KEMRRVRGndaaMIFQEPMTSLnpiF--TIGRQISEALTCHGdIGKAEARAETVRLLEKV 147
Cdd:PRK13631 92 DKKNNHELItnpyskkiknfKELRRRVS----MVFQFPEYQL---FkdTIEKDIMFGPVALG-VKKSEAKKLAKFYLNKM 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 148 RIPNaaSRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMlQEEEGMSVLFITHDMGVVA 227
Cdd:PRK13631 164 GLDD--SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHTMEHVL 240
|
250 260
....*....|....*....|....
gi 636784243 228 EIADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK13631 241 EVADEVIVMDKGKILKTGTPYEIF 264
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
29-254 |
5.18e-25 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 103.84 E-value: 5.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRrvrgNDAAMIFQEPm 108
Cdd:cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKT----TLINLLMRFYDPQKGQILIDGIDIRDISRKSLR----SMIGVVLQDT- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tslnpiFTIGRQISEALTchgdIGKAEARAETVRLLEKV--------RIPNAasrFDEYP----HQFSGGMRQRVMIAMA 176
Cdd:cd03254 87 ------FLFSGTIMENIR----LGRPNATDEEVIEAAKEagahdfimKLPNG---YDTVLgengGNLSQGERQLLAIARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 177 LASRPKLLIADEPTTALDVTIQGQILDLIKMLQeeEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDDIFHRG 254
Cdd:cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKK 228
|
|
| CP_lyasePhnL |
TIGR02324 |
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ... |
13-232 |
6.39e-25 |
|
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 103.24 E-value: 6.39e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLV---DGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMR--LLAKGS--SRIDGAITlngkDVL 85
Cdd:TIGR02324 2 LEVEDLSKTFTLhqqGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAnyLPDSGRilVRHEGAWV----DLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 ALPEKEMRRVRGNDAAMIFQepMTSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAAsrFDEYPHQFSG 165
Cdd:TIGR02324 78 QASPREVLEVRRKTIGYVSQ--FLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPERL--WHLPPATFSG 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 166 GMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADR 232
Cdd:TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAK-ARGAALIGIFHDEEVRELVADR 218
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
35-222 |
6.58e-25 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 103.32 E-value: 6.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 35 VSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEMRRVRGNDAAMIFQEPM--TSLN 112
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKS-TLLAILAGLDDGSS---GEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMliPTLN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 113 PIFTIgrQISEALTCHGDigkAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTA 192
Cdd:PRK10584 105 ALENV--ELPALLRGESS---RQSRNGAKALLEQLGL---GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGN 176
|
170 180 190
....*....|....*....|....*....|
gi 636784243 193 LDVTIQGQILDLIKMLQEEEGMSVLFITHD 222
Cdd:PRK10584 177 LDRQTGDKIADLLFSLNREHGTTLILVTHD 206
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
13-254 |
6.75e-25 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 103.46 E-value: 6.75e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM 92
Cdd:cd03251 1 VEFKNVT--FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKS----TLVNLIPRFYDVDSGRILIDGHDVRDYTLASL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPMtslnpIF--TIGRQISealtchgdIGKAEARAETVRllEKVRIPNAASRFDEYPHQF------- 163
Cdd:cd03251 75 RR----QIGLVSQDVF-----LFndTVAENIA--------YGRPGATREEVE--EAARAANAHEFIMELPEGYdtviger 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 ----SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeeEGMSVLFITHDMGVVaEIADRTIVMYRG 239
Cdd:cd03251 136 gvklSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTI-ENADRIVVLEDG 212
|
250
....*....|....*
gi 636784243 240 EAVETGTTDDIFHRG 254
Cdd:cd03251 213 KIVERGTHEELLAQG 227
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
29-256 |
7.87e-25 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 108.90 E-value: 7.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRvrgnDAAMIFQEPM 108
Cdd:PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTL----INLLQRVFDPQSGRILIDGTDIRTVTRASLRR----NIAVVFQDAG 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tslnpIFTigRQISEALTchgdIGKAEARAETVRLLEKVR-----IPNAASRFD----EYPHQFSGGMRQRVMIAMALAS 179
Cdd:PRK13657 420 -----LFN--RSIEDNIR----VGRPDATDEEMRAAAERAqahdfIERKPDGYDtvvgERGRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 180 RPKLLIADEPTTALDVTIQGQILDLIKMLQeeEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDDIFHRGRH 256
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDELVARGGR 562
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
306-551 |
1.26e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 103.68 E-value: 1.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLvtRFDIRGGllgrktgAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSldgYDVLS 385
Cdd:PRK13648 5 NSIIVFKNV--SFQYQSD-------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF---YNNQA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAVSLRRMRRSIQMIFQDPfaslnPRMTVGAAVAEPITeHGLGSGAQARDKAADLLERVGLKPDMMKRY---PHEFSGG 462
Cdd:PRK13648 73 ITDDNFEKLRKHIGIVFQNP-----DNQFVGSIVKYDVA-FGLENHAVPYDEMHRRVSEALKQVDMLERAdyePNALSGG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 463 QRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHrVAVMYLGEIVEIGP 542
Cdd:PRK13648 147 QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADH-VIVMNKGTVYKEGT 225
|
....*....
gi 636784243 543 RAELFSNPQ 551
Cdd:PRK13648 226 PTEIFDHAE 234
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
8-223 |
1.92e-24 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 102.20 E-value: 1.92e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLAL 87
Cdd:PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKS----TLLHLLGGLDTPTSGDVIFNGQPMSKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 88 PEKEMRRVRGNDAAMIFQepMTSLNPIFTIGRQISEALTchgdIGKAEARAETVRLLEKVRIPNAASRFDEYPHQFSGGM 167
Cdd:PRK11629 77 SSAAKAELRNQKLGFIYQ--FHHLLPDFTALENVAMPLL----IGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGE 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDM 223
Cdd:PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
31-266 |
2.20e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 102.61 E-value: 2.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLA-KGSSRIDGAITLNGKDVLAlPEKEMRRVRgNDAAMIFQEPmt 109
Cdd:PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElNEEARVEGEVRLFGRNIYS-PDVDPIEVR-REVGMVFQYP-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 slNPI--FTIGRQISEALTCHGDIGKAEARAETVR-------LLEKVRipnaaSRFDEYPHQFSGGMRQRVMIAMALASR 180
Cdd:PRK14267 95 --NPFphLTIYDNVAIGVKLNGLVKSKKELDERVEwalkkaaLWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMK 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 181 PKLLIADEPTTALDVTIQGQILDLIKMLQEEegMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRHPYTR 260
Cdd:PRK14267 168 PKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTE 245
|
....*.
gi 636784243 261 ALLSAV 266
Cdd:PRK14267 246 KYVTGA 251
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-276 |
2.53e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 102.87 E-value: 2.53e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFLvdgdWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSS-RIDGAITLNGKDVLA 86
Cdd:PRK14271 17 AAAPAMAAVNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyRYSGDVLLGGRSIFN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEK-EMRRVRGndaaMIFQEPmtslNPI-FTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAAS-RFDEYPHQF 163
Cdd:PRK14271 93 YRDVlEFRRRVG----MLFQRP----NPFpMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKdRLSDSPFRL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEegMSVLFITHDMGVVAEIADRTIVMYRGEAVE 243
Cdd:PRK14271 165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVE 242
|
250 260 270
....*....|....*....|....*....|...
gi 636784243 244 TGTTDDIFHRGRHPYTRALLSAVPrlGSMADRK 276
Cdd:PRK14271 243 EGPTEQLFSSPKHAETARYVAGLS--GDVKDAK 273
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
36-250 |
3.09e-24 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 101.58 E-value: 3.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 36 SFDVMPGETVAIVGESGSGKSvTSLSIMR-LLAKGSsridGAITLNGKDVLALPEKEmRRVrgndaAMIFQEpmTSLNPI 114
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKS-TLLNLIAgFLTPAS----GSLTLNGQDHTTTPPSR-RPV-----SMLFQE--NNLFSH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 115 FTIGRQIseALTCH-GDIGKAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLIADEPTTAL 193
Cdd:PRK10771 86 LTVAQNI--GLGLNpGLKLNAAQREKLHAIARQMGIEDLLARL---PGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 194 DVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
13-241 |
3.33e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 99.60 E-value: 3.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM 92
Cdd:cd03246 1 LEVENVS--FRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKS----TLARLILGLLRPTSGRVRLDGADISQWDPNEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgndaamifqepmtslnpifTIGrqisealtchgdigkaeARAETVRLLEKVRIPNAasrfdeyphqFSGGMRQRVM 172
Cdd:cd03246 75 GD---------------------HVG-----------------YLPQDDELFSGSIAENI----------LSGGQRQRLG 106
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEiADRTIVMYRGEA 241
Cdd:cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
334-519 |
5.95e-24 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 101.31 E-value: 5.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAvslrrmRRSIqmIFQDpfASLNPRM 413
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA------ERGV--VFQN--EGLLPWR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSI 493
Cdd:PRK11248 86 NVQDNVAFGLQLAGVEK-MQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
|
170 180
....*....|....*....|....*.
gi 636784243 494 KAQVCNLLMDLQQSLNLAFLFISHDM 519
Cdd:PRK11248 164 REQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
334-588 |
7.20e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 102.01 E-value: 7.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV-LSLDAV-SLRRMRRSIQMIFQDPFASLNp 411
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpANLKKIkEVKRLRKEIGLVFQFPEYQLF- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 RMTVGAAVA-EPITehgLGSGAQ-ARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:PRK13645 105 QETIEKDIAfGPVN---LGENKQeAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNpqhaytKKLMAAVPVPDPSR 569
Cdd:PRK13645 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN------QELLTKIEIDPPKL 255
|
250 260
....*....|....*....|..
gi 636784243 570 RGIK---RNLGTDELKSPVRPV 588
Cdd:PRK13645 256 YQLMyklKNKGIDLLNKNIRTI 277
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
309-548 |
7.64e-24 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 105.95 E-value: 7.64e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDIRGgllgrktgaIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlsLDA 388
Cdd:TIGR02203 331 VEFRNVTFRYPGRD---------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD---LAD 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDPFASLNprmTVGAAVAepitehgLGSGAQARD-------KAADLLERVGLKPDMMKRYPHE--- 458
Cdd:TIGR02203 399 YTLASLRRQVALVSQDVVLFND---TIANNIA-------YGRTEQADRaeieralAAAYAQDFVDKLPLGLDTPIGEngv 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 459 -FSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERvSHRVAVMYLGEI 537
Cdd:TIGR02203 469 lLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEK-ADRIVVMDDGRI 545
|
250
....*....|.
gi 636784243 538 VEIGPRAELFS 548
Cdd:TIGR02203 546 VERGTHNELLA 556
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
337-546 |
7.90e-24 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 100.38 E-value: 7.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLrrmRRSIQMIFQDP----------- 405
Cdd:cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL---RRAIGVVPQDTvlfndtigyni 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 406 -FASLNprmtvgaAVAEPITEhglgsgaqARdKAADLLERV--------------GLKpdmmkrypheFSGGQRQRICIA 470
Cdd:cd03253 96 rYGRPD-------ATDEEVIE--------AA-KAAQIHDKImrfpdgydtivgerGLK----------LSGGEKQRVAIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 471 RALALDPKVIVADESVSALDVSIKAQVCNLLMDLqqSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRAEL 546
Cdd:cd03253 150 RAILKNPPILLLDEATSALDTHTEREIQAALRDV--SKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
22-262 |
8.12e-24 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 100.64 E-value: 8.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 22 FLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDvLALPEKE-MRRVRGnda 100
Cdd:cd03252 8 FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKS----TLTKLIQRFYVPENGRVLVDGHD-LALADPAwLRRQVG--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 101 aMIFQEpmtslNPIFTigRQISEaltchgDIGKAEARAETVRLLEKVRIPNAASRFDEYPHQF-----------SGGMRQ 169
Cdd:cd03252 80 -VVLQE-----NVLFN--RSIRD------NIALADPGMSMERVIEAAKLAGAHDFISELPEGYdtivgeqgaglSGGQRQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDliKMLQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDD 249
Cdd:cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMR--NMHDICAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDE 222
|
250
....*....|....
gi 636784243 250 IF-HRGRHPYTRAL 262
Cdd:cd03252 223 LLaENGLYAYLYQL 236
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
339-548 |
8.73e-24 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 100.04 E-value: 8.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlsLDAVSLRRMRRSIQMIFQDP--FASLNPRMTVG 416
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG-----QDHTTTPPSRRPVSMLFQENnlFSHLTVAQNIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 417 AAVAePitehGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQ 496
Cdd:PRK10771 94 LGLN-P----GLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 497 VCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFS 548
Cdd:PRK10771 168 MLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
22-254 |
1.30e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 100.60 E-value: 1.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 22 FLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRvrgnDAA 101
Cdd:PRK13648 15 FQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKS----TIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK----HIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 102 MIFQEPMTSlnpiF---TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALA 178
Cdd:PRK13648 87 IVFQNPDNQ----FvgsIVKYDVAFGLENHA-VPYDEMHRRVSEALKQVDMLERA---DYEPNALSGGQKQRVAIAGVLA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 179 SRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDDIFHRG 254
Cdd:PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHA 233
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
12-545 |
1.46e-23 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 104.49 E-value: 1.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdgdwkPVVR---DVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA----KGSsrIDGAITLNGKdv 84
Cdd:NF040905 1 ILEMRGITKTF-------PGVKaldDVNLSVREGEIHALCGENGAGKS----TLMKVLSgvypHGS--YEGEILFDGE-- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 lalpEKEMRRVRGNDAA---MIFQE----PMTSL--NpIFtIGRQISEaltcHGDIGKAEARAETVRLLEKVRIpnaasr 155
Cdd:NF040905 66 ----VCRFKDIRDSEALgivIIHQElaliPYLSIaeN-IF-LGNERAK----RGVIDWNETNRRARELLAKVGL------ 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 156 fDEYPHQFSG----GMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIAD 231
Cdd:NF040905 130 -DESPDTLVTdigvGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELK-AQGITSIIISHKLNEIRRVAD 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 232 RTIVMYRGEAVET------GTTDDIFHRGrhpytrallsAVPRlgSMADrkwplRFPvvdtttgeRREPvEVADTvdrrr 305
Cdd:NF040905 208 SITVLRDGRTIETldcradEVTEDRIIRG----------MVGR--DLED-----RYP--------ERTP-KIGEV----- 256
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 tpILEVKNLVTRFDIRgglLGRKtgaihAVEDVSFNLFQGETLSLVGESGCGK-----STTGRSITRLVqpnGGSVSLDG 380
Cdd:NF040905 257 --VFEVKNWTVYHPLH---PERK-----VVDDVSLNVRRGEIVGIAGLMGAGRtelamSVFGRSYGRNI---SGTVFKDG 323
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 381 ydvlslDAVSLRRMRRSIQ--------------MIFQDPFaslnpRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVG 446
Cdd:NF040905 324 ------KEVDVSTVSDAIDaglayvtedrkgygLNLIDDI-----KRNITLANLGKVSRRGVIDENEEIKVAEEYRKKMN 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 447 LK-PDMMKRYpHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERV 525
Cdd:NF040905 393 IKtPSVFQKV-GNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAE-GKGVIVISSELPELLGM 470
|
570 580
....*....|....*....|
gi 636784243 526 SHRVAVMYLGEIVEIGPRAE 545
Cdd:NF040905 471 CDRIYVMNEGRITGELPREE 490
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
336-546 |
1.64e-23 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 105.42 E-value: 1.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 336 EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDavsLRRMRRSIQMIFQdpfaslNPRMTV 415
Cdd:TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD---VQAVRRQLGVVLQ------NGRLMS 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 416 GAavaepITEHGLGSGAQARDKAADLLERVGLKPDMmKRYP---H--------EFSGGQRQRICIARALALDPKVIVADE 484
Cdd:TIGR03797 541 GS-----IFENIAGGAPLTLDEAWEAARMAGLAEDI-RAMPmgmHtvisegggTLSGGQRQRLLIARALVRKPRILLFDE 614
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 485 SVSALDVSIKAQVCNLLmdlqQSLNLAFLFISHDMAVVeRVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:TIGR03797 615 ATSALDNRTQAIVSESL----ERLKVTRIVIAHRLSTI-RNADRIYVLDAGRVVQQGTYDEL 671
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
31-242 |
2.41e-23 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 104.81 E-value: 2.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPEKEMRRVRGNDAAMIFQEpmTS 110
Cdd:PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKS-TLMNILGCLDKPTS---GTYRVAGQDVATLDADALAQLRREHFGFIFQR--YH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 LNPIFTIGRQIsEALTCHGDIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:PRK10535 97 LLSHLTAAQNV-EVPAVYAGLERKQRLLRAQELLQRLGL---EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 191 TALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEiADRTIVMYRGEAV 242
Cdd:PRK10535 173 GALDSHSGEEVMAILHQLR-DRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
334-542 |
2.61e-23 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 98.33 E-value: 2.61e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDavsLRRMRRSIQMIFQDPF---ASLn 410
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG---LHDLRSRISIIPQDPVlfsGTI- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 pRMTVgaavaEPITEHGLGSGAQARDKAAdLLERVGLKPDMMKRYPHE----FSGGQRQRICIARALALDPKVIVADESV 486
Cdd:cd03244 95 -RSNL-----DPFGEYSDEELWQALERVG-LKEFVESLPGGLDTVVEEggenLSVGQRQLLCLARALLRKSKILVLDEAT 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 487 SALDVSIKAQVcnllmdlQQSLNLAF-----LFISHdmavveRV-----SHRVAVMYLGEIVEIGP 542
Cdd:cd03244 168 ASVDPETDALI-------QKTIREAFkdctvLTIAH------RLdtiidSDRILVLDKGRVVEFDS 220
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
42-245 |
3.10e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 97.95 E-value: 3.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 42 GETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEmRRVrgndaAMIFQEpmTSLNPIFTIGRQI 121
Cdd:cd03298 24 GEITAIVGPSGSGKS----TLLNLIAGFETPQSGRVLINGVDVTAAPPAD-RPV-----SMLFQE--NNLFAHLTVEQNV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 122 SEALTCHGDIgKAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQI 201
Cdd:cd03298 92 GLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRL---PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 636784243 202 LDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03298 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
29-223 |
3.30e-23 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 99.39 E-value: 3.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLAlPEKEmrrvRGndaaMIFQEpm 108
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKT----TLLNLIAGFVPYQHGSITLDGKPVEG-PGAE----RG----VVFQN-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLNPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLIADE 188
Cdd:PRK11248 79 EGLLPWRNVQDNVAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRY---IWQLSGGQRQRVGIARALAANPQLLLLDE 154
|
170 180 190
....*....|....*....|....*....|....*
gi 636784243 189 PTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDM 223
Cdd:PRK11248 155 PFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
13-242 |
3.40e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 99.39 E-value: 3.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVD-GDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEK 90
Cdd:COG1101 2 LELKNLSKTFNPGtVNEKRALDGLNLTIEEGDFVTVIGSNGAGKS----TLLNAIA-GSLPPDsGSILIDGKDVTKLPEY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 emRRvrgndAAMI---FQEPMTSLNPIFTI------------GRQISEALTcHGDIGKAEARAETVRL-LEKvripnaas 154
Cdd:COG1101 77 --KR-----AKYIgrvFQDPMMGTAPSMTIeenlalayrrgkRRGLRRGLT-KKRRELFRELLATLGLgLEN-------- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 155 RFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTI 234
Cdd:COG1101 141 RLDTKVGLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLI 220
|
....*...
gi 636784243 235 VMYRGEAV 242
Cdd:COG1101 221 MMHEGRII 228
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
334-547 |
3.64e-23 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 103.63 E-value: 3.64e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAvslRRMRRSIQMIFQDPfaslnprm 413
Cdd:TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP---AELRARMALVPQDP-------- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITEHGL--GSGAQARD--KAADLLERVGLKPDMMKRYPHE----FSGGQRQRICIARALALDPKVIVADES 485
Cdd:TIGR02204 424 VLFAASVMENIRYGRpdATDEEVEAaaRAAHAHEFISALPEGYDTYLGErgvtLSGGQRQRIAIARAILKDAPILLLDEA 503
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 486 VSALDVSIKAQVcnllmdlQQSLNLAF-----LFISHDMAVVERvSHRVAVMYLGEIVEIGPRAELF 547
Cdd:TIGR02204 504 TSALDAESEQLV-------QQALETLMkgrttLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELI 562
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
339-541 |
4.32e-23 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 97.62 E-value: 4.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAvslrrMRRSIQMIFQDpfASLNPRMTVGAA 418
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP-----YQRPVSMLFQE--NNLFAHLTVRQN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 419 VAEPITEhGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVC 498
Cdd:TIGR01277 91 IGLGLHP-GLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 636784243 499 NLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:TIGR01277 169 ALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
34-258 |
5.01e-23 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 100.96 E-value: 5.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNG-------KDVLALPEKemRRVrgndaAMIFQ 105
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKT----TLIRLIA-GLTRPDeGEIVLNGrtlfdsrKGIFLPPEK--RRI-----GYVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 106 EpmTSLNPIFTIGRQISEALTchgdigKAEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLI 185
Cdd:TIGR02142 83 E--ARLFPHLSVRGNLRYGMK------RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 186 ADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRHPY 258
Cdd:TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
31-245 |
5.29e-23 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 97.26 E-value: 5.29e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETvAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKeMRRVRGndaaMIFQEPMTS 110
Cdd:cd03264 15 ALDGVSLTLGPGMY-GLLGPNGAGKT----TLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIG----YLPQEFGVY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 lnPIFTIGRQISEALTCHGdIGKAEARAETVRLLEKVripNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:cd03264 85 --PNFTVREFLDYIAWLKG-IPSKEVKARVDEVLELV---NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 191 TALDVtiqGQILDLIKMLQE-EEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03264 159 AGLDP---EERIRFRNLLSElGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
336-550 |
5.34e-23 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 103.65 E-value: 5.34e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 336 EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRSIQmifQDPfaslnprMTV 415
Cdd:TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG---QEP-------VLF 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 416 GAAVAEPITeHGLGSGAQARDKAADLLERVGlkpDMMKRYPHEF-----------SGGQRQRICIARALALDPKVIVADE 484
Cdd:TIGR00958 568 SGSVRENIA-YGLTDTPDEEIMAAAKAANAH---DFIMEFPNGYdtevgekgsqlSGGQKQRIAIARALVRKPRVLILDE 643
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 485 SVSALDvsikAQVCNLLMDLQQSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:TIGR00958 644 ATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
13-240 |
7.35e-23 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 98.21 E-value: 7.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkgssridGAITLNGKDVLA--LPEK 90
Cdd:PRK11247 13 LLLNAVSKRY---GE-RTVLNQLDLHIPAGQFVAVVGRSGCGKS----TLLRLLA-------GLETPSAGELLAgtAPLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRrvrgNDAAMIFQEpmTSLNPIFTIGRQISEALtchgdigKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQR 170
Cdd:PRK11247 78 EAR----EDTRLMFQD--ARLLPWKKVIDNVGLGL-------KGQWRDAALQALAAVGL---ADRANEWPAALSGGQKQR 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
36-240 |
1.23e-22 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 96.47 E-value: 1.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 36 SFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEmRRVrgndaAMIFQEpmTSLNPIF 115
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKS----TLLNLIAGFIEPASGSIKVNDQSHTGLAPYQ-RPV-----SMLFQE--NNLFAHL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 116 TIGRQIseALTCHGDIG-KAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALD 194
Cdd:TIGR01277 86 TVRQNI--GLGLHPGLKlNAEQQEKVVDAAQQVGIADYLDRL---PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 636784243 195 VTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
308-548 |
1.24e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 98.38 E-value: 1.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllgrkTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlSLD 387
Cdd:PRK13636 5 ILKVEELNYNY----------SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDPFASLnprmtVGAAVAEPITEHGLGSG---AQARDKAADLLERVGLKPdmMKRYP-HEFSGGQ 463
Cdd:PRK13636 74 RKGLMKLRESVGMVFQDPDNQL-----FSASVYQDVSFGAVNLKlpeDEVRKRVDNALKRTGIEH--LKDKPtHCLSFGQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPR 543
Cdd:PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
|
....*
gi 636784243 544 AELFS 548
Cdd:PRK13636 227 KEVFA 231
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
309-550 |
1.39e-22 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 96.84 E-value: 1.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllGRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03218 1 LRAENLSKRY-------GKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPM 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vsLRRMRRSIQMIFQDpfASLNPRMTVG---AAVAEPITEhglgSGAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQ 465
Cdd:cd03218 70 --HKRARLGIGYLPQE--ASIFRKLTVEeniLAVLEIRGL----SKKEREEKLEELLEEFHITH-LRKSKASSLSGGERR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 466 RICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAE 545
Cdd:cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219
|
....*
gi 636784243 546 LFSNP 550
Cdd:cd03218 220 IAANE 224
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
13-245 |
1.59e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 95.67 E-value: 1.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAflVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMrllakGSSR---IDGAITLNGKDVLALPE 89
Cdd:cd03217 1 LEIKDLHVS--VGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM-----GHPKyevTEGEILFKGEDITDLPP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEmrRVRgNDAAMIFQEPmtslnpiftigrqisealtchgdigkaeARAETVRLLEKVRIPNAAsrfdeyphqFSGGMRQ 169
Cdd:cd03217 72 EE--RAR-LGIFLAFQYP----------------------------PEIPGVKNADFLRYVNEG---------FSGGEKK 111
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEI-ADRTIVMYRGEAVETG 245
Cdd:cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSG 187
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
34-253 |
1.66e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 97.89 E-value: 1.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSvtslSIMRLL------AKGSSRIDG-AITLNGKDvlalpeKEMRRVRgNDAAMIFQE 106
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKS----TIMQLLnglhvpTQGSVRVDDtLITSTSKN------KDIKQIR-KKVGLVFQF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 PMTSLnpiF--TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIpnAASRFDEYPHQFSGGMRQRVMIAMALASRPKLL 184
Cdd:PRK13649 94 PESQL---FeeTVLKDVAFGPQNFG-VSQEEAEALAREKLALVGI--SESLFEKNPFELSGGQMRRVAIAGILAMEPKIL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 185 IADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHR 253
Cdd:PRK13649 168 VLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
309-541 |
1.90e-22 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 95.72 E-value: 1.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllGRKtgaiHAVEDVSFNLFQGeTLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSlda 388
Cdd:cd03264 1 LQLENLTKRY-------GKK----RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK--- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vSLRRMRRSIQMIFQDPfaSLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRIC 468
Cdd:cd03264 66 -QPQKLRRRIGYLPQEF--GVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVG 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLqqSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03264 141 IAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL--GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
309-541 |
1.91e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 95.81 E-value: 1.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllGRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA 388
Cdd:cd03269 1 LEVENVTKRF-------GRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAAR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSL----------RRMRRSIQMIFqdpFASLnprmtvgaavaepiteHGLGSgAQARDKAADLLERVGLKPDMMKRYpHE 458
Cdd:cd03269 70 NRIgylpeerglyPKMKVIDQLVY---LAQL----------------KGLKK-EEARRRIDEWLERLELSEYANKRV-EE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 459 FSGGQRQRICIARALALDPKVIVADESVSALDVsIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIV 538
Cdd:cd03269 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
...
gi 636784243 539 EIG 541
Cdd:cd03269 208 LYG 210
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
335-537 |
2.73e-22 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 95.62 E-value: 2.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYdvlSLDAVSLRRMRRSIQMIFQDPFASlnprmt 414
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK---PISQYEHKYLHSKVSLVGQEPVLF------ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 vGAAVAEPITeHGLGSGAQARDK-AADLLERVGLKPDMMKRYPHE-------FSGGQRQRICIARALALDPKVIVADESV 486
Cdd:cd03248 101 -ARSLQDNIA-YGLQSCSFECVKeAAQKAHAHSFISELASGYDTEvgekgsqLSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 636784243 487 SALDVSIKAQVCNLLMDLQQSLNLafLFISHDMAVVERvSHRVAVMYLGEI 537
Cdd:cd03248 179 SALDAESEQQVQQALYDWPERRTV--LVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
13-245 |
2.88e-22 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 94.30 E-value: 2.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALpEKEM 92
Cdd:cd03247 1 LSINNVS--FSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKS----TLLQLLTGDLKPQQGEITLDGVPVSDL-EKAL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RrvrgNDAAMIFQEPMtslnpIFtigrqiseALTCHGDIGKaearaetvrllekvripnaasrfdeyphQFSGGMRQRVM 172
Cdd:cd03247 74 S----SLISVLNQRPY-----LF--------DTTLRNNLGR----------------------------RFSGGERQRLA 108
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTIQGQILDLikMLQEEEGMSVLFITHDMGVVaEIADRTIVMYRGEAVETG 245
Cdd:cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSL--IFEVLKDKTLIWITHHLTGI-EHMDKILFLENGKIIMQG 178
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
305-518 |
3.02e-22 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 95.55 E-value: 3.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 305 RTPILEVKNLvtrfdirggllGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVL 384
Cdd:PRK10247 4 NSPLLQLQNV-----------GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLdavSLRRMRRSIQMIFQDPfaslnprMTVGAAVAEP-ITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQ 463
Cdd:PRK10247 73 TL---KPEIYRQQVSYCAQTP-------TLFGDTVYDNlIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGE 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHD 518
Cdd:PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
307-537 |
4.69e-22 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 93.65 E-value: 4.69e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRfdirggllgrktgaiHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL 386
Cdd:cd03215 3 PVLEVRGLSVK---------------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRR 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAvsLRRMRRSIQMIFQDpfaslnpRMTVGAAVAEPITEHGLgsgaqardkAADLLervglkpdmmkryphefSGGQRQR 466
Cdd:cd03215 68 SP--RDAIRAGIAYVPED-------RKREGLVLDLSVAENIA---------LSSLL-----------------SGGNQQK 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 467 ICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
334-546 |
7.70e-22 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 100.20 E-value: 7.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRmrrSIQMIFQDPFaslnprM 413
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ---FINYLPQEPY------I 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVAEPITEHGLGSGAQARDKAADLLErvgLKPDMmKRYPHEF-----------SGGQRQRICIARALALDPKVIVA 482
Cdd:TIGR01193 560 FSGSILENLLLGAKENVSQDEIWAACEIAE---IKDDI-ENMPLGYqtelseegssiSGGQKQRIALARALLTDSKVLIL 635
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 483 DESVSALDVSIKAQVCNLLMDLQQSlnlAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRAEL 546
Cdd:TIGR01193 636 DESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDEL 695
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
12-251 |
8.24e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 95.53 E-value: 8.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDGA-ITLNGKDVLalp 88
Cdd:PRK13639 1 ILETRDLKYSY---PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILkpTSGEVLIKGEpIKYDKKSLL--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 ekEMRRVRGndaaMIFQEPMtslNPIFtigrqiseALTCHGDIG---------KAEARAETVRLLEKVRIPNAASRfdeY 159
Cdd:PRK13639 75 --EVRKTVG----IVFQNPD---DQLF--------APTVEEDVAfgplnlglsKEEVEKRVKEALKAVGMEGFENK---P 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 160 PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:PRK13639 135 PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN-KEGITIIISTHDVDLVPVYADKVYVMSDG 213
|
250
....*....|..
gi 636784243 240 EAVETGTTDDIF 251
Cdd:PRK13639 214 KIIKEGTPKEVF 225
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
335-548 |
9.76e-22 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 99.82 E-value: 9.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRR-----------MRRSIQmifq 403
Cdd:TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRqmgvvlqenvlFSRSIR---- 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 404 DPFASLNPRMTVGAAVA--------EPITEHGLGSGAQARDKAADLlervglkpdmmkryphefSGGQRQRICIARALAL 475
Cdd:TIGR01846 549 DNIALCNPGAPFEHVIHaaklagahDFISELPQGYNTEVGEKGANL------------------SGGQRQRIAIARALVG 610
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 476 DPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVeRVSHRVAVMYLGEIVEIGPRAELFS 548
Cdd:TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLSTV-RACDRIIVLEKGQIAESGRHEELLA 680
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
29-246 |
1.51e-21 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 93.33 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLakgsSRIDGAITLNGKDVLALPEKEMRRvrgnDAAMIFQEPM 108
Cdd:cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSSGSILIDGVDISKIGLHDLRS----RISIIPQDPV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tslnpIF--TIgRQISEALTCHGDiGKAEARAETVRLLEKVRIPNAA--SRFDEYPHQFSGGMRQRVMIAMALASRPKLL 184
Cdd:cd03244 89 -----LFsgTI-RSNLDPFGEYSD-EELWQALERVGLKEFVESLPGGldTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 185 IADEPTTALDVTIQGQILDLIKMlqEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGT 246
Cdd:cd03244 162 VLDEATASVDPETDALIQKTIRE--AFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
10-253 |
1.58e-21 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 93.99 E-value: 1.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFLV------------------DGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMrllakgsS 71
Cdd:COG1134 2 SSMIEVENVSKSYRLyhepsrslkelllrrrrtRREEFWALKDVSFEVERGESVGIIGRNGAGKS-TLLKLI-------A 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 72 RID----GAITLNGkdvlalpekemrRVrgndAAMIfqEPMTSLNPIFTiGRQ---ISEALtcHGdIGKAEARAetvrll 144
Cdd:COG1134 74 GILeptsGRVEVNG------------RV----SALL--ELGAGFHPELT-GREniyLNGRL--LG-LSRKEIDE------ 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 145 ekvripnaasRFDE---------YPHQ----FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeE 211
Cdd:COG1134 126 ----------KFDEivefaelgdFIDQpvktYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELR-E 194
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 636784243 212 EGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHR 253
Cdd:COG1134 195 SGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
12-251 |
1.72e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 94.77 E-value: 1.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDWKPVvRDVSFDVMPGETVAIVGESGSGKSVTSlsimRLLAKGSSRIDGAITLNGKDVLALPEKE 91
Cdd:PRK13642 4 ILEVENLVFKYEKESDVNQL-NGVSFSITKGEWVSIIGQNGSGKSTTA----RLIDGLFEEFEGKVKIDGELLTAENVWN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGndaaMIFQEPMTSLnpiftIGRQISEALTcHGDIGKAEARAETV-RLLEKVRIPNAASRFDEYPHQFSGGMRQR 170
Cdd:PRK13642 79 LRRKIG----MVFQNPDNQF-----VGATVEDDVA-FGMENQGIPREEMIkRVDEALLAVNMLDFKTREPARLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
.
gi 636784243 251 F 251
Cdd:PRK13642 228 F 228
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
34-251 |
1.93e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 94.90 E-value: 1.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLA-LPEKEMRRVRgNDAAMIFQEPMTSLn 112
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKS-TLMQHFNALLKPSS---GTITIAGYHITPeTGNKNLKKLR-KKVSLVFQFPEAQL- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 113 piF--TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPNaaSRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:PRK13641 99 --FenTVLKDVEFGPKNFG-FSEDEAKEKALKWLKKVGLSE--DLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 191 TALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
7-236 |
1.98e-21 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 98.13 E-value: 1.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 7 ASASPVLSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLA 86
Cdd:TIGR02857 316 AAPASSLEFSGVSVAY---PGRRPALRPVSFTVPPGERVALVGPSGAGKS----TLLNLLLGFVDPTEGSIAVNGVPLAD 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMRRvrgnDAAMIFQEPMtslnpIF--TIGRQISealtchgdIGKAEARAETVR-------LLEKVR-IPNA-ASR 155
Cdd:TIGR02857 389 ADADSWRD----QIAWVPQHPF-----LFagTIAENIR--------LARPDASDAEIRealeragLDEFVAaLPQGlDTP 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 156 FDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDliKMLQEEEGMSVLFITHDMGVVAEiADRTIV 235
Cdd:TIGR02857 452 IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE--ALRALAQGRTVLLVTHRLALAAL-ADRIVV 528
|
.
gi 636784243 236 M 236
Cdd:TIGR02857 529 L 529
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
14-266 |
2.12e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 93.99 E-value: 2.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 14 SVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIM-RLLAKGSsridGAITLNGKDVLALPEKEM 92
Cdd:COG4604 3 EIKNVSKRY---GG-KVVLDDVSLTIPKGGITALIGPNGAGKS-TLLSMIsRLLPPDS----GEVLVDGLDVATTPSREL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 -RRVrgndaAMIFQEPmtSLNPIFTI------GR--------------QISEALTCHGdigkaearaetvrlLEKVRipn 151
Cdd:COG4604 74 aKRL-----AILRQEN--HINSRLTVrelvafGRfpyskgrltaedreIIDEAIAYLD--------------LEDLA--- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 152 aasrfDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIAD 231
Cdd:COG4604 130 -----DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYAD 204
|
250 260 270
....*....|....*....|....*....|....*
gi 636784243 232 RTIVMYRGEAVETGTTDDIFhrgrhpyTRALLSAV 266
Cdd:COG4604 205 HIVAMKDGRVVAQGTPEEII-------TPEVLSDI 232
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
331-547 |
2.33e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 94.80 E-value: 2.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 331 AIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAV-SLRRMRRSIQMIFQDPFASL 409
Cdd:PRK13643 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQkEIKPVRKKVGVVFQFPESQL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRmTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:PRK13643 98 FEE-TVLKDVAFGPQNFGI-PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLfISHDMAVVERVSHRVAVMYLGEIVEIGPRAELF 547
Cdd:PRK13643 176 DPKARIEMMQLFESIHQSGQTVVL-VTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
307-518 |
2.58e-21 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 92.16 E-value: 2.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFDIRggLLgrktgaihaVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL 386
Cdd:COG4133 1 MMLEAENLSCRRGER--LL---------FSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAvslrRMRRSIQMIFQDPfaSLNPRMTVgaavaepiTEH-----GLGSGAQARDKAADLLERVGLkPDMMKRYPHEFSG 461
Cdd:COG4133 70 RE----DYRRRLAYLGHAD--GLKPELTV--------RENlrfwaALYGLRADREAIDEALEAVGL-AGLADLPVRQLSA 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 462 GQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHD 518
Cdd:COG4133 135 GQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLAR-GGAVLLTTHQ 190
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
334-556 |
3.85e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 93.31 E-value: 3.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRL--------VQpngGSVSLDGYDVLS--LDAVSLRRmrrSIQMIFQ 403
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndlipgfrVE---GKVTFHGKNLYApdVDPVEVRR---RIGMVFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 404 --DPFA-SLNPRMTVGAAV------AEPITEHGLGSGAqARDKAADLLERVGLkpdmmkryphEFSGGQRQRICIARALA 474
Cdd:PRK14243 99 kpNPFPkSIYDNIAYGARIngykgdMDELVERSLRQAA-LWDEVKDKLKQSGL----------SLSGGQQQRLCIARAIA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 475 LDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLafLFISHDMAVVERVSHRVAVM---------YLGEIVEIGPRAE 545
Cdd:PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQYTI--IIVTHNMQQAARVSDMTAFFnveltegggRYGYLVEFDRTEK 245
|
250
....*....|.
gi 636784243 546 LFSNPQHAYTK 556
Cdd:PRK14243 246 IFNSPQQQATR 256
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
11-250 |
5.07e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 96.80 E-value: 5.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFL-VDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAItlnGKDVLALPE 89
Cdd:TIGR03269 278 PIIKVRNVSKRYIsVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRV---GDEWVDMTK 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 K-EMRRVRGND-AAMIFQEpmTSLNPIFTIGRQISEALTChgDIGKAEARAETVRLLEKVRIPN--AASRFDEYPHQFSG 165
Cdd:TIGR03269 355 PgPDGRGRAKRyIGILHQE--YDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEekAEEILDKYPDELSE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 166 GMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
....*
gi 636784243 246 TTDDI 250
Cdd:TIGR03269 511 DPEEI 515
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
29-254 |
5.37e-21 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 97.49 E-value: 5.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRvrgnDAAMIFQEPM 108
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKS----TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR----QVALVGQEPV 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 T---SLNPIFTIG---------RQISEALTCHGDIGKAEARAETVrllekvripnaasrFDEYPHQFSGGMRQRVMIAMA 176
Cdd:TIGR00958 566 LfsgSVRENIAYGltdtpdeeiMAAAKAANAHDFIMEFPNGYDTE--------------VGEKGSQLSGGQKQRIAIARA 631
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 177 LASRPKLLIADEPTTALDVTIQgqilDLIKMLQEEEGMSVLFITHDMGVVaEIADRTIVMYRGEAVETGTTDDIFHRG 254
Cdd:TIGR00958 632 LVRKPRVLILDEATSALDAECE----QLLQESRSRASRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
330-565 |
5.42e-21 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 97.10 E-value: 5.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMRRS-IQMIFQDpfAS 408
Cdd:PRK10535 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREhFGFIFQR--YH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 409 LNPRMTVGAAVAEPITEHGLGSgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSA 488
Cdd:PRK10535 97 LLSHLTAAQNVEVPAVYAGLER-KQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 489 LDVSIKAQVCNLLMDLQQSLNlAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPraelfSNPQHAYTKKLMAAVPVP 565
Cdd:PRK10535 175 LDSHSGEEVMAILHQLRDRGH-TVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPP-----AQEKVNVAGGTEPVVNTA 244
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
345-574 |
6.04e-21 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 92.82 E-value: 6.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 345 GETLSLVGESGCGKSTTGRSITRLVQPNGGSVsLDGydvlsldAVSLRRMRRSIQMIFQDpfASLNPRMTVgaavaepIT 424
Cdd:PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG-------TAPLAEAREDTRLMFQD--ARLLPWKKV-------ID 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 425 EHGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDL 504
Cdd:PRK11247 101 NVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 505 QQSLNLAFLFISHDmavverVSHRVAV---MYLGEIVEIGpraelfsnpqhaytkkLMAAVPVPDPSRRGIKR 574
Cdd:PRK11247 180 WQQHGFTVLLVTHD------VSEAVAMadrVLLIEEGKIG----------------LDLTVDLPRPRRRGSAR 230
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
13-262 |
6.89e-21 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 96.71 E-value: 6.89e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM 92
Cdd:TIGR02203 331 VEFRNVT--FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKS----TLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPMtslnpIF--TIGRQISEALTchGDIGKAEARaetvrllEKVRIPNAASRFDEYPHQF------- 163
Cdd:TIGR02203 405 RR----QVALVSQDVV-----LFndTIANNIAYGRT--EQADRAEIE-------RALAAAYAQDFVDKLPLGLdtpigen 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 ----SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeeEGMSVLFITHDMGVVaEIADRTIVMYRG 239
Cdd:TIGR02203 467 gvllSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTI-EKADRIVVMDDG 543
|
250 260
....*....|....*....|....
gi 636784243 240 EAVETGTTDDIF-HRGRHPYTRAL 262
Cdd:TIGR02203 544 RIVERGTHNELLaRNGLYAQLHNM 567
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
329-550 |
7.47e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 92.94 E-value: 7.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 329 TGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSldaVSLRRMRRSIQMIFQDPFAS 408
Cdd:PRK13652 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK---ENIREVRKFVGLVFQNPDDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 409 L-NPrmTVGAAVAEPITEHGLGSGAQARdKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVS 487
Cdd:PRK13652 91 IfSP--TVEQDIAFGPINLGLDEETVAH-RVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 488 ALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
309-537 |
7.51e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 89.97 E-value: 7.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDirggllgrktGAIHAV-EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLD 387
Cdd:cd03246 1 LEVENVSFRYP----------GAEPPVlRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 avsLRRMRRSIQMIFQDPfaslnprMTVGAAVAEPItehglgsgaqardkaadllervglkpdmmkrypheFSGGQRQRI 467
Cdd:cd03246 71 ---PNELGDHVGYLPQDD-------ELFSGSIAENI-----------------------------------LSGGQRQRL 105
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLqQSLNLAFLFISHDMAVVERVShRVAVMYLGEI 537
Cdd:cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLASAD-RILVLEDGRV 173
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
332-538 |
9.32e-21 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 91.11 E-value: 9.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 332 IHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLrrmRRSIQMIFQDP---FAS 408
Cdd:cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL---RRNIGYVPQDVtlfYGT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 409 LNPRMTVGAAVAEpitehglgsgaQARDKAAdlLERVGLKpDMMKRYPHEF-----------SGGQRQRICIARALALDP 477
Cdd:cd03245 94 LRDNITLGAPLAD-----------DERILRA--AELAGVT-DFVNKHPNGLdlqigergrglSGGQRQAVALARALLNDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 478 KVIVADESVSALDVSIKAQvcnLLMDLQQSL-NLAFLFISHDMAVVERVShRVAVMYLGEIV 538
Cdd:cd03245 160 PILLLDEPTSAMDMNSEER---LKERLRQLLgDKTLIIITHRPSLLDLVD-RIIVMDSGRIV 217
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
307-551 |
1.03e-20 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 91.63 E-value: 1.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFdirggllGRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV--L 384
Cdd:COG1137 2 MTLEAENLVKSY-------GKRT----VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIthL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 385 SLDavslRRMRRSIQMIFQDPfaSLNPRMTVG---AAVAEpitEHGLgSGAQARDKAADLLERVGLKPdMMKRYPHEFSG 461
Cdd:COG1137 71 PMH----KRARLGIGYLPQEA--SIFRKLTVEdniLAVLE---LRKL-SKKEREERLEELLEEFGITH-LRKSKAYSLSG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 462 GQRQRICIARALALDPKVIVADESVSALD---VS-IKaqvcNLLMDLQQSlNLAFLfIShDMAVVE--RVSHRVAVMYLG 535
Cdd:COG1137 140 GERRRVEIARALATNPKFILLDEPFAGVDpiaVAdIQ----KIIRHLKER-GIGVL-IT-DHNVREtlGICDRAYIISEG 212
|
250
....*....|....*.
gi 636784243 536 EIVEIGPRAELFSNPQ 551
Cdd:COG1137 213 KVLAEGTPEEILNNPL 228
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
13-246 |
1.11e-20 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 91.67 E-value: 1.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAflVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMrllakGSSR---IDGAITLNGKDVLALPE 89
Cdd:COG0396 1 LEIKNLHVS--VEG--KEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLM-----GHPKyevTSGSILLDGEDILELSP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEmrRVRgndaA---MIFQEPMtslnPI--FTIGRQISEALTCHGD--IGKAEARAETVRLLEKVRIPNA-ASRF-DEyp 160
Cdd:COG0396 72 DE--RAR----AgifLAFQYPV----EIpgVSVSNFLRTALNARRGeeLSAREFLKLLKEKMKELGLDEDfLDRYvNE-- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 161 hQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVtiqgqilDLIKMLQE------EEGMSVLFITHDMGVVAEI-ADRT 233
Cdd:COG0396 140 -GFSGGEKKRNEILQMLLLEPKLAILDETDSGLDI-------DALRIVAEgvnklrSPDRGILIITHYQRILDYIkPDFV 211
|
250
....*....|...
gi 636784243 234 IVMYRGEAVETGT 246
Cdd:COG0396 212 HVLVDGRIVKSGG 224
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
8-250 |
1.15e-20 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 91.98 E-value: 1.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAF----LVDGdwkpvvrdVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKD 83
Cdd:PRK11300 1 MSQPLLSVSGLMMRFggllAVNN--------VNLEVREQEIVSLIGPNGAGKT-TVFNCLTGFYKPTG---GTILLRGQH 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 VLALPEKEMRR---VRGNDAAMIFQEpMTSLNPIFTIGRQISEALTCHGDIG-KAEARAETVRL------LEKVRIPNAA 153
Cdd:PRK11300 69 IEGLPGHQIARmgvVRTFQHVRLFRE-MTVIENLLVAQHQQLKTGLFSGLLKtPAFRRAESEALdraatwLERVGLLEHA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 154 SRFD---EYPHQfsggmrQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIA 230
Cdd:PRK11300 148 NRQAgnlAYGQQ------RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGIS 221
|
250 260
....*....|....*....|
gi 636784243 231 DRTIVMYRGEAVETGTTDDI 250
Cdd:PRK11300 222 DRIYVVNQGTPLANGTPEEI 241
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
7-221 |
1.16e-20 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 96.03 E-value: 1.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 7 ASASPVLSVRNLTtafLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA----KGSsridGAITL-NG 81
Cdd:COG4178 357 TSEDGALALEDLT---LRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKS----TLLRAIAglwpYGS----GRIARpAG 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 KDVLALPEKemrrvrgndaamifqepmtslnPIFTIG--RqisEALT---CHGDIGKAEARAetvrLLEKVRIPNAASRF 156
Cdd:COG4178 426 ARVLFLPQR----------------------PYLPLGtlR---EALLypaTAEAFSDAELRE----ALEAVGLGHLAERL 476
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 157 DE---YPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITH 221
Cdd:COG4178 477 DEeadWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLR--EELPGTTVISVGH 542
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
16-240 |
1.44e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 90.61 E-value: 1.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 16 RNLTTAFLVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRV 95
Cdd:cd03248 15 QNVTFAYPTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKS----TVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 96 rgndAAMIFQEPMTSlnpiftiGRQISEaltchgDIGKAEARAETVRLLEKVRIPNAASRFDEYPH-----------QFS 164
Cdd:cd03248 90 ----VSLVGQEPVLF-------ARSLQD------NIAYGLQSCSFECVKEAAQKAHAHSFISELASgydtevgekgsQLS 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVaEIADRTIVMYRGE 240
Cdd:cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALY--DWPERRTVLVIAHRLSTV-ERADQILVLDGGR 225
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
334-546 |
1.70e-20 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 95.47 E-value: 1.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlsLDAVSLRRMRRSIQMI------FQDpfa 407
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD---LRDYTLASLRNQVALVsqnvhlFND--- 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 408 slnprmTVGAAVAEPITEHGlgSGAQArDKAAdlleRVGLKPDMMKRYPHEF-----------SGGQRQRICIARALALD 476
Cdd:PRK11176 432 ------TIANNIAYARTEQY--SREQI-EEAA----RMAYAMDFINKMDNGLdtvigengvllSGGQRQRIAIARALLRD 498
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 477 PKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERvSHRVAVMYLGEIVEIGPRAEL 546
Cdd:PRK11176 499 SPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAEL 565
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
307-562 |
1.72e-20 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 91.37 E-value: 1.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRfdirgglLGRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL 386
Cdd:PRK13548 1 AMLEARNLSVR-------LGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAVSL--RR--MRRSIQMIFqdPFaslnprmTVgaavaEPITEHGLGSGAQARDKAADL----LERVGLKpDMMKRYPHE 458
Cdd:PRK13548 70 SPAELarRRavLPQHSSLSF--PF-------TV-----EEVVAMGRAPHGLSRAEDDALvaaaLAQVDLA-HLAGRDYPQ 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 459 FSGGQRQRICIARALA------LDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVM 532
Cdd:PRK13548 135 LSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214
|
250 260 270
....*....|....*....|....*....|
gi 636784243 533 YLGEIVEIGPraelfsnPQHAYTKKLMAAV 562
Cdd:PRK13548 215 HQGRLVADGT-------PAEVLTPETLRRV 237
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
27-275 |
2.01e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 91.59 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 27 DWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDGaitLNGKDVLALPekEMRRVRGndaaMIF 104
Cdd:PRK13644 13 DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLrpQKGKVLVSG---IDTGDFSKLQ--GIRKLVG----IVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 105 QEPMTSLnpiftIGRQISEALTchgdIGKAEARAETVRLLEKVRIPNAASRFDEY----PHQFSGGMRQRVMIAMALASR 180
Cdd:PRK13644 84 QNPETQF-----VGRTVEEDLA----FGPENLCLPPIEIRKRVDRALAEIGLEKYrhrsPKTLSGGQGQCVALAGILTME 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 181 PKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVaEIADRTIVMYRGEAVETGTTDDIFhrgRHPYTR 260
Cdd:PRK13644 155 PECLIFDEVTSMLDPDSGIAVLERIKKLH-EKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVL---SDVSLQ 229
|
250
....*....|....*
gi 636784243 261 ALLSAVPRLGSMADR 275
Cdd:PRK13644 230 TLGLTPPSLIELAEN 244
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
310-565 |
2.49e-20 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 90.98 E-value: 2.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 310 EVKNLVtrfDIRGGLLGRKTGAIhaVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAV 389
Cdd:PRK11831 3 SVANLV---DMRGVSFTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 390 SLRRMRRSIQMIFQDpfASLNPRMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLK--PDMMkryPHEFSGGQRQRI 467
Cdd:PRK11831 78 RLYTVRKRMSMLFQS--GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRgaAKLM---PSELSGGMARRA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 468 CIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELF 547
Cdd:PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232
|
250 260
....*....|....*....|
gi 636784243 548 SNPQHAYTKKL--MAAVPVP 565
Cdd:PRK11831 233 ANPDPRVRQFLdgIADGPVP 252
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
12-253 |
2.75e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 91.40 E-value: 2.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDgdwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKE 91
Cdd:PRK13652 3 LIETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS----GSVLIRGEPITKENIRE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGndaaMIFQEPMtslNPIF--TIGRQISEALTchgDIGKAEARAETvRLLEKVRIPNAASRFDEYPHQFSGGMRQ 169
Cdd:PRK13652 76 VRKFVG----LVFQNPD---DQIFspTVEQDIAFGPI---NLGLDEETVAH-RVSSALHMLGLEELRDRVPHHLSGGEKK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDD 249
Cdd:PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
....
gi 636784243 250 IFHR 253
Cdd:PRK13652 225 IFLQ 228
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-260 |
3.08e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 90.87 E-value: 3.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKS--VTSLSIMRLLaKGSSRIDGAITLNGKDVLAlp 88
Cdd:PRK14258 6 PAIKVNNLSFYY----DTQKILEGVSMEIYQSKVTAIIGPSGCGKStfLKCLNRMNEL-ESEVRVEGRVEFFNQNIYE-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 ekemRRVRGN----DAAMIFQEPmtSLNPIfTIGRQISEALTCHGDIGKAEARAETVRLLEkvripnAASRFDEYPHQ-- 162
Cdd:PRK14258 79 ----RRVNLNrlrrQVSMVHPKP--NLFPM-SVYDNVAYGVKIVGWRPKLEIDDIVESALK------DADLWDEIKHKih 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 163 -----FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMY 237
Cdd:PRK14258 146 ksaldLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225
|
250 260
....*....|....*....|....*...
gi 636784243 238 RGEA-----VETGTTDDIFHRGRHPYTR 260
Cdd:PRK14258 226 GNENrigqlVEFGLTKKIFNSPHDSRTR 253
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
22-245 |
3.49e-20 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 89.57 E-value: 3.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 22 FLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRGndaa 101
Cdd:cd03245 10 FSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKS----TLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 102 MIFQEPMT---SLNPIFTIGRQIsealtchgdigkaearAETVRLLEKVRIPNAASRFDEYPHQF-----------SGGM 167
Cdd:cd03245 82 YVPQDVTLfygTLRDNITLGAPL----------------ADDERILRAAELAGVTDFVNKHPNGLdlqigergrglSGGQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVaEIADRTIVMYRGEAVETG 245
Cdd:cd03245 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR--QLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
34-275 |
4.24e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 90.95 E-value: 4.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRI-DGAITLNGKdvlalpEKEMRRVRgNDAAMIFQEPMTS 110
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLqpTEGKVTVgDIVVSSTSK------QKEIKPVR-KKVGVVFQFPESQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 LNPIfTIGRQISEALTCHGdIGKAEARAETVRLLEKVRIpnAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 190
Cdd:PRK13643 97 LFEE-TVLKDVAFGPQNFG-IPKEKAEKIAAEKLEMVGL--ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 191 TALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHrgRHPYTRALLSAVPRLG 270
Cdd:PRK13643 173 AGLDPKARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ--EVDFLKAHELGVPKAT 249
|
....*
gi 636784243 271 SMADR 275
Cdd:PRK13643 250 HFADQ 254
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
330-531 |
6.03e-20 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 93.51 E-value: 6.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLrrmRRSIQMIFQDPFasl 409
Cdd:TIGR02857 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW---RDQIAWVPQHPF--- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 nprmTVGAAVAEPItehGLGSGAQARDKAADLLERVGLK------PDMMK----RYPHEFSGGQRQRICIARALALDPKV 479
Cdd:TIGR02857 407 ----LFAGTIAENI---RLARPDASDAEIREALERAGLDefvaalPQGLDtpigEGGAGLSGGQAQRLALARAFLRDAPL 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 480 IVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVSHRVAV 531
Cdd:TIGR02857 480 LLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAALADRIVVL 529
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
29-251 |
6.26e-20 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 89.14 E-value: 6.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVLALPekeM-RRVRgndAAMIF--Q 105
Cdd:cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKT-TTFYMIVGLVKPDS---GKILLDGQDITKLP---MhKRAR---LGIGYlpQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 106 EPmtslnPIF---TIGRQISEALTCHGDiGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQRVMIAMALASRPK 182
Cdd:cd03218 83 EA-----SIFrklTVEENILAVLEIRGL-SKKEREEKLEELLEEFHI---THLRKSKASSLSGGERRRVEIARALATNPK 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 183 LLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILK-DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
32-253 |
8.60e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 90.53 E-value: 8.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDvlalPEKEMRRVRGNdAAMIF---QEPM 108
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKS-TTIKMLTGILVPTS---GEVRVLGYV----PFKRRKEFARR-IGVVFgqrSQLW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLNPI--FTIGRQISEaltchgdIGKAEAR---AETVRLL---EKVRIPnaaSRfdeyphQFSGGMRQRVMIAMALASR 180
Cdd:COG4586 109 WDLPAIdsFRLLKAIYR-------IPDAEYKkrlDELVELLdlgELLDTP---VR------QLSLGQRMRCELAAALLHR 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 181 PKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHR 253
Cdd:COG4586 173 PKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKER 245
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
30-246 |
1.12e-19 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 92.96 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRGndaaMIFQEpmT 109
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKS----TLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIG----IVPQD--T 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 SLnpiF--TIGRQISealtchgdIGKAEA-RAETVRLLEKVRIpnaasrfdeypHQF-------------------SGGM 167
Cdd:COG5265 442 VL---FndTIAYNIA--------YGRPDAsEEEVEAAARAAQI-----------HDFieslpdgydtrvgerglklSGGE 499
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLqeEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGT 246
Cdd:COG5265 500 KQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREV--ARGRTTLVIAHRLSTIVD-ADEILVLEAGRIVERGT 575
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
309-541 |
1.50e-19 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 87.47 E-value: 1.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktgAIH---AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:cd03369 7 IEVENLSVRY------------APDlppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIST 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDavsLRRMRRSIQMIFQDPFaslnprmtvgaavaepITEHGLGSGAQARDKAADLLERVGLKpdmMKRYPHEFSGGQRQ 465
Cdd:cd03369 75 IP---LEDLRSSLTIIPQDPT----------------LFSGTIRSNLDPFDEYSDEEIYGALR---VSEGGLNLSQGQRQ 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 466 RICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVShRVAVMYLGEIVEIG 541
Cdd:cd03369 133 LLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRTIIDYD-KILVMDAGEVKEYD 205
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
47-251 |
1.51e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 89.30 E-value: 1.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 47 IVGESGSGKS-VTSLSIMRLLAKGSSRI--DGAITLNGKDVlalpeKEMRRVRgNDAAMIFQEPMTSLnpiF--TIGRQI 121
Cdd:PRK13645 42 VIGTTGSGKStMIQLTNGLIISETGQTIvgDYAIPANLKKI-----KEVKRLR-KEIGLVFQFPEYQL---FqeTIEKDI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 122 SEALTCHGDiGKAEARAETVRLLEKVRIPNAASRfdEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQI 201
Cdd:PRK13645 113 AFGPVNLGE-NKQEAYKKVPELLKLVQLPEDYVK--RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 636784243 202 LDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIF 251
Cdd:PRK13645 190 INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
32-293 |
1.71e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 89.14 E-value: 1.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVlALPEKEMRRVRGNdAAMIFQEPMtsl 111
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS----GRILFDGKPI-DYSRKGLMKLRES-VGMVFQDPD--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFT--IGRQISEALTCHGdIGKAEARAETVRLLEKVRIpnaASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEP 189
Cdd:PRK13636 93 NQLFSasVYQDVSFGAVNLK-LPEDEVRKRVDNALKRTGI---EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 190 TTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFhrGRHPYTRALLSAVPRL 269
Cdd:PRK13636 169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF--AEKEMLRKVNLRLPRI 246
|
250 260
....*....|....*....|....*..
gi 636784243 270 GSMAD---RKWPLRFPVVDTTTGERRE 293
Cdd:PRK13636 247 GHLMEilkEKDGFVFDELDLTISQARK 273
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
333-541 |
1.81e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 86.21 E-value: 1.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 333 HAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVslrrMRRSIQMIFQDPFASlnpr 412
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKA----LSSLISVLNQRPYLF---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 413 mtvgaavaepitehglgsgaqardkAADLLERVGLKpdmmkrypheFSGGQRQRICIARALALDPKVIVADESVSALDVS 492
Cdd:cd03247 88 -------------------------DTTLRNNLGRR----------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 636784243 493 IKAQVCNLLMdlQQSLNLAFLFISHDMAVVERVShRVAVMYLGEIVEIG 541
Cdd:cd03247 133 TERQLLSLIF--EVLKDKTLIWITHHLTGIEHMD-KILFLENGKIIMQG 178
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
12-240 |
2.17e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 86.45 E-value: 2.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTtaFLVDGDW----KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA--KGSSRIDGAITLNGKDvl 85
Cdd:cd03213 3 TLSFRNLT--VTVKSSPsksgKQLLKNVSGKAKPGELTAIMGPSGAGKS----TLLNALAgrRTGLGVSGEVLINGRP-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 aLPEKEMRRVRGndaaMIFQEPMtsLNPIFTIgrqisealtchgdigkaearAETVRLLEKVRipnaasrfdeyphQFSG 165
Cdd:cd03213 75 -LDKRSFRKIIG----YVPQDDI--LHPTLTV--------------------RETLMFAAKLR-------------GLSG 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 166 GMRQRVMIAMALASRPKLLIADEPTTALDvtiQGQILDLIKMLQE--EEGMSVLFITHD-MGVVAEIADRTIVMYRGE 240
Cdd:cd03213 115 GERKRVSIALELVSNPSLLFLDEPTSGLD---SSSALQVMSLLRRlaDTGRTIICSIHQpSSEIFELFDKLLLLSQGR 189
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-222 |
2.41e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 91.65 E-value: 2.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 3 DVSSASASPVLSVRNLTTAFlvdGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKgssrIDGAITLNGK 82
Cdd:TIGR02868 325 AGAVGLGKPTLELRDLSAGY---PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP----LQGEVTLDGV 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 83 DVLALPEKEMRRVRG--NDAAMIFQepmTSLNPIFTIGRqisealtchGDIGKAEARA--ETVRLLEKVR-IPNAAS-RF 156
Cdd:TIGR02868 398 PVSSLDQDEVRRRVSvcAQDAHLFD---TTVRENLRLAR---------PDATDEELWAalERVGLADWLRaLPDGLDtVL 465
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 157 DEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLikMLQEEEGMSVLFITHD 222
Cdd:TIGR02868 466 GEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED--LLAALSGRTVVLITHH 529
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
30-253 |
3.75e-19 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 89.13 E-value: 3.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRI-DGAITLNGKDVLALPEKEmrrvrgNDAAMIFQEpm 108
Cdd:PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKS----TLLRMVA-GLERItSGEIWIGGRVVNELEPAD------RDIAMVFQN-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLNPIFTIGRQISEALTCHGdIGKAEARAetvRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADE 188
Cdd:PRK11650 85 YALYPHMSVRENMAYGLKIRG-MPKAEIEE---RVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 189 PTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHR 253
Cdd:PRK11650 161 PLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
9-256 |
3.92e-19 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 91.32 E-value: 3.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLTTAFLVDgdwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALP 88
Cdd:PRK10790 337 QSGRIDIDNVSFAYRDD---NLVLQNINLSVPSRGFVALVGHTGSGKS----TLASLLMGYYPLTEGEIRLDGRPLSSLS 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKEMRrvrgNDAAMIFQEPMTSLNPIF---TIGRQISEAltchgdigKAEARAETVRLLEKVR-IPNAA-SRFDEYPHQF 163
Cdd:PRK10790 410 HSVLR----QGVAMVQQDPVVLADTFLanvTLGRDISEE--------QVWQALETVQLAELARsLPDGLyTPLGEQGNNL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVlfITHDMGVVAEiADRTIVMYRGEAVE 243
Cdd:PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVV--IAHRLSTIVE-ADTILVLHRGQAVE 554
|
250
....*....|....
gi 636784243 244 TGTTDDIF-HRGRH 256
Cdd:PRK10790 555 QGTHQQLLaAQGRY 568
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
13-246 |
4.05e-19 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 85.93 E-value: 4.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLakgsSRIDGAITLNGKDVLALPEKEM 92
Cdd:cd03369 7 IEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL----EAEEGKIEIDGIDISTIPLEDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgnDAAMIFQEPM-------TSLNPI--FTiGRQISEALtchgdigkaearaetvrllekvripnaasRFDEYPHQF 163
Cdd:cd03369 81 RS----SLTIIPQDPTlfsgtirSNLDPFdeYS-DEEIYGAL-----------------------------RVSEGGLNL 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVAEIaDRTIVMYRGEAVE 243
Cdd:cd03369 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIR--EEFTNSTILTIAHRLRTIIDY-DKILVMDAGEVKE 203
|
...
gi 636784243 244 TGT 246
Cdd:cd03369 204 YDH 206
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
306-542 |
4.22e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 87.06 E-value: 4.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFDIRGGLLGR-----------KTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGG 374
Cdd:COG1134 2 SSMIEVENVSKSYRLYHEPSRSlkelllrrrrtRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 375 SVSLDGYdVLSLDAVSlrrmrrsiqmifqdpfASLNPRMTV------GAAVaepiteHGLgSGAQARDKAADLLERVGLK 448
Cdd:COG1134 82 RVEVNGR-VSALLELG----------------AGFHPELTGreniylNGRL------LGL-SRKEIDEKFDEIVEFAELG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 449 P--DM-MKRYphefSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERV 525
Cdd:COG1134 138 DfiDQpVKTY----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRL 212
|
250
....*....|....*..
gi 636784243 526 SHRVAVMYLGEIVEIGP 542
Cdd:COG1134 213 CDRAIWLEKGRLVMDGD 229
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
330-551 |
4.47e-19 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 89.32 E-value: 4.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlsldavslRRM------RRSIQMIFQ 403
Cdd:PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE-----------KRMndvppaERGVGMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 404 D----PFASLNPRMTVGAAVAepitehglGSGAQARDK----AADLLERVGLkpdmMKRYPHEFSGGQRQRICIARALAL 475
Cdd:PRK11000 83 SyalyPHLSVAENMSFGLKLA--------GAKKEEINQrvnqVAEVLQLAHL----LDRKPKALSGGQRQRVAIGRTLVA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 476 DPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
35-266 |
6.21e-19 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 86.43 E-value: 6.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 35 VSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSsridGAITLNGKDVLALPEKEMRRVRgndaAMIFQEPMTSLN-P 113
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKS-TLLARMAGLLPGQ----GEILLNGRPLSDWSAAELARHR----AYLSQQQSPPFAmP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 114 IFtigrqisEALTCHGDIGKAEARAETV--RLLEKVRIPNAASRfdeyP-HQFSGGMRQRVMIAMALA-------SRPKL 183
Cdd:COG4138 86 VF-------QYLALHQPAGASSEAVEQLlaQLAEALGLEDKLSR----PlTQLSGGEWQRVRLAAVLLqvwptinPEGQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 184 LIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFhrgrhpyTRALL 263
Cdd:COG4138 155 LLLDEPMNSLDVAQQAALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVM-------TPENL 226
|
...
gi 636784243 264 SAV 266
Cdd:COG4138 227 SEV 229
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
10-266 |
6.41e-19 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 86.68 E-value: 6.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTtafLVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLS-IMRLLAKGSsridgaitlnGKDVLALP 88
Cdd:COG1119 1 DPLLELRNVT---VRRGG-KTILDDISWTVKPGEHWAILGPNGAGKS-TLLSlITGDLPPTY----------GNDVRLFG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EK-------EMRRVRG---NDAAMIFQEPMTSLNPI----F-TIG--RQISEAltchgDIGKAEARAETVRLLEKvripn 151
Cdd:COG1119 66 ERrggedvwELRKRIGlvsPALQLRFPRDETVLDVVlsgfFdSIGlyREPTDE-----QRERARELLELLGLAHL----- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 152 AASRFdeypHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDmgvVAEIAD 231
Cdd:COG1119 136 ADRPF----GTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHH---VEEIPP 208
|
250 260 270
....*....|....*....|....*....|....*...
gi 636784243 232 ---RTIVMYRGEAVETGTTDDIFhrgrhpyTRALLSAV 266
Cdd:COG1119 209 gitHVLLLKDGRVVAAGPKEEVL-------TSENLSEA 239
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
330-518 |
9.19e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 89.73 E-value: 9.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMrrsIQMIFQDP--FA 407
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR---VSVCAQDAhlFD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 408 SlnprmTVGAAVAepitehgLGSGAQARDKAADLLERVGL------KPDMMKRYPHE----FSGGQRQRICIARALALDP 477
Cdd:TIGR02868 423 T-----TVRENLR-------LARPDATDEELWAALERVGLadwlraLPDGLDTVLGEggarLSGGERQRLALARALLADA 490
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 636784243 478 KVIVADESVSALDVSIKAQVCNLLMDLQQSlnLAFLFISHD 518
Cdd:TIGR02868 491 PILLLDEPTEHLDAETADELLEDLLAALSG--RTVVLITHH 529
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
352-551 |
9.94e-19 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 88.01 E-value: 9.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 352 GESGCGKSTTGRSITRLVQPNGGSVSLDGyDVLSlDA---VSLRRMRRSIQMIFQDpfASLNPRMTVgaavaepitEHGL 428
Cdd:PRK11144 31 GRSGAGKTSLINAISGLTRPQKGRIVLNG-RVLF-DAekgICLPPEKRRIGYVFQD--ARLFPHYKV---------RGNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 429 GSGAQARDKA--ADLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQ 506
Cdd:PRK11144 98 RYGMAKSMVAqfDKIVALLGIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 636784243 507 SLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:PRK11144 177 EINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
29-240 |
1.06e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 85.46 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKdvlaLPEKEMRRVRGNDAAMIFQEPM 108
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKT-TTLKILSGLLQPTS---GEVRVAGL----VPWKRRKKFLRRIGVVFGQKTQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TS--LNPI--FTIGRQISealtchgDIGKAEAR---AETVRLLEKVRIPNAASRfdeyphQFSGGMRQRVMIAMALASRP 181
Cdd:cd03267 106 LWwdLPVIdsFYLLAAIY-------DLPPARFKkrlDELSELLDLEELLDTPVR------QLSLGQRMRAEIAAALLHEP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 182 KLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:cd03267 173 EILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
20-245 |
1.15e-18 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 85.28 E-value: 1.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 20 TAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITlngkdvlalpekemrrVRGN 98
Cdd:cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKS----TLLRLLA-GIYPPDsGTVT----------------VRGR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 99 DAAMIfqEPMTSLNPIFTiGRQ-ISEALTCHGdIGKAEARAETVRLLEKVRIPNAasrFDEYPHQFSGGMRQRVMIAMAL 177
Cdd:cd03220 85 VSSLL--GLGGGFNPELT-GREnIYLNGRLLG-LSRKEIDEKIDEIIEFSELGDF---IDLPVKTYSSGMKARLAFAIAT 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 178 ASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELL-KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
35-239 |
1.30e-18 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 84.93 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 35 VSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRgNDAAMIFQEPMTSLNPi 114
Cdd:PRK10908 21 VTFHMRPGEMAFLTGHSGAGKS----TLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR-RQIGMIFQDHHLLMDR- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 115 fTIGRQISEALTCHGDIGKaEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALD 194
Cdd:PRK10908 95 -TVYDNVAIPLIIAGASGD-DIRRRVSAALDKVGLLDKAKNF---PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 636784243 195 VTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:PRK10908 170 DALSEGILRLFEEFN-RVGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
11-250 |
1.62e-18 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 85.08 E-value: 1.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLakgssRID-GAITLNGKDVLALPe 89
Cdd:COG1137 2 MTLEAENLVKSY---GK-RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLV-----KPDsGRIFLDGEDITHLP- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 keM-RRVRgndAAMIF--QEPmtSlnpIFtigRQIS---------EALtchgDIGKAEARAETVRLLEKVRIPNAASRfd 157
Cdd:COG1137 72 --MhKRAR---LGIGYlpQEA--S---IF---RKLTvednilavlELR----KLSKKEREERLEELLEEFGITHLRKS-- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 158 eYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALD---VT-IQGQILDLikmlqEEEGMSVLfIT-HDmgvVAE---I 229
Cdd:COG1137 133 -KAYSLSGGERRRVEIARALATNPKFILLDEPFAGVDpiaVAdIQKIIRHL-----KERGIGVL-ITdHN---VREtlgI 202
|
250 260
....*....|....*....|.
gi 636784243 230 ADRTIVMYRGEAVETGTTDDI 250
Cdd:COG1137 203 CDRAYIISEGKVLAEGTPEEI 223
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
32-250 |
1.64e-18 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 85.61 E-value: 1.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVmPGETV--------------AIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRvrg 97
Cdd:PRK10575 14 LRNVSFRV-PGRTLlhplsltfpagkvtGLIGHNGSGKS----TLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 98 nDAAMIFQ-----EPMTsLNPIFTIGRqiseaLTCHGDIGK--AEARAETVRLLEKVRIPNAASRFDEyphQFSGGMRQR 170
Cdd:PRK10575 86 -KVAYLPQqlpaaEGMT-VRELVAIGR-----YPWHGALGRfgAADREKVEEAISLVGLKPLAHRLVD---SLSGGERQR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
29-254 |
1.70e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 85.83 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDG-AITLNGKDVLALPEKemrrvrgndAAMIFQ 105
Cdd:PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLrpQKGAVLWQGkPLDYSKRGLLALRQQ---------VATVFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 106 EPMTSLnpIFT-IGRQISEALTchgDIGKAEAraETVRLLEKVRIPNAASRFDEYPHQ-FSGGMRQRVMIAMALASRPKL 183
Cdd:PRK13638 85 DPEQQI--FYTdIDSDIAFSLR---NLGVPEA--EITRRVDEALTLVDAQHFRHQPIQcLSHGQKKRVAIAGALVLQARY 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 184 LIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRG 254
Cdd:PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIV-AQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
13-253 |
1.89e-18 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 89.04 E-value: 1.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLL------AKGSSRIDGA-ITLNGKDVL 85
Cdd:COG4618 331 LSVENLT--VVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKS----TLARLLvgvwppTAGSVRLDGAdLSQWDREEL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 A-----LPekemrrvrgndaamifQEPmtSLNPIfTIGRQIS---EAltchgDIGKAEARAETVRLLEKV-RIPNA-ASR 155
Cdd:COG4618 405 GrhigyLP----------------QDV--ELFDG-TIAENIArfgDA-----DPEKVVAAAKLAGVHEMIlRLPDGyDTR 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 156 FDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAeIADRTIV 235
Cdd:COG4618 461 IGEGGARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALK-ARGATVVVITHRPSLLA-AVDKLLV 538
|
250
....*....|....*...
gi 636784243 236 MYRGEAVETGTTDDIFHR 253
Cdd:COG4618 539 LRDGRVQAFGPRDEVLAR 556
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
345-529 |
2.40e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 84.45 E-value: 2.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 345 GETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMR-RSIQMIFQDPFasLNPRMTVGAAVAEPI 423
Cdd:PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRaKHVGFVFQSFM--LIPTLNALENVELPA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 424 TEHGlGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMD 503
Cdd:PRK10584 114 LLRG-ESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
|
170 180
....*....|....*....|....*.
gi 636784243 504 LQQSLNLAFLFISHDMAVVERVSHRV 529
Cdd:PRK10584 192 LNREHGTTLILVTHDLQLAARCDRRL 217
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
309-538 |
2.53e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 84.31 E-value: 2.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDIR---GGLLG-------RKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSL 378
Cdd:cd03267 1 IEVSNLSKSYRVYskePGLIGslkslfkRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 379 DGYDVLSLDAVSLRRM-----RRSiQMIFQDPFA---SLNPRMtvgaavaepiteHGLGSG--AQARDKAADLLErVGlk 448
Cdd:cd03267 81 AGLVPWKRRKKFLRRIgvvfgQKT-QLWWDLPVIdsfYLLAAI------------YDLPPArfKKRLDELSELLD-LE-- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 449 pDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHR 528
Cdd:cd03267 145 -ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR 223
|
250
....*....|
gi 636784243 529 VAVMYLGEIV 538
Cdd:cd03267 224 VLVIDKGRLL 233
|
|
| NHLM_micro_ABC1 |
TIGR03796 |
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes ... |
335-546 |
3.01e-18 |
|
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274788 [Multi-domain] Cd Length: 710 Bit Score: 88.85 E-value: 3.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvLSLDAVSLRRMRRSIQMIFQDPFaslnprmT 414
Cdd:TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG---IPREEIPREVLANSVAMVDQDIF-------L 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 VGAAVAEPIT-------EHGLgSGAqARDkaADLLERVGLKPDmmkRYPHE-------FSGGQRQRICIARALALDPKVI 480
Cdd:TIGR03796 565 FEGTVRDNLTlwdptipDADL-VRA-CKD--AAIHDVITSRPG---GYDAElaegganLSGGQRQRLEIARALVRNPSIL 637
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 481 VADESVSALDVSIKAQVcnllMDLQQSLNLAFLFISHDMAVVeRVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:TIGR03796 638 ILDEATSALDPETEKII----DDNLRRRGCTCIIVAHRLSTI-RDCDEIIVLERGKVVQRGTHEEL 698
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
306-544 |
3.78e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 85.63 E-value: 3.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNLVTRFdirggllGRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLS 385
Cdd:PRK13537 5 VAPIDFRNVEKRY-------GDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 ldavSLRRMRRSIQMIFQdpFASLNPRMTVGAAVAEPITEHGLgSGAQARDKAADLLE--RVGLKPDMMKRyphEFSGGQ 463
Cdd:PRK13537 74 ----RARHARQRVGVVPQ--FDNLDPDFTVRENLLVFGRYFGL-SAAAARALVPPLLEfaKLENKADAKVG---ELSGGM 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDvsikAQVCNLLMDLQQSLnLA----FLFISHDMAVVERVSHRVAVMYLG-EIV 538
Cdd:PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLD----PQARHLMWERLRSL-LArgktILLTTHFMEEAERLCDRLCVIEEGrKIA 218
|
....*.
gi 636784243 539 EIGPRA 544
Cdd:PRK13537 219 EGAPHA 224
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
13-246 |
4.06e-18 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 88.15 E-value: 4.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDvlaLPEKEM 92
Cdd:PRK11176 342 IEFRNVT--FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKS----TIANLLTRFYDIDEGEILLDGHD---LRDYTL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRgNDAAMIFQEPMtslnpIF--TIGRQISEALTCH---GDIGKAEARAETVRLLEKvrIPNAasrFD----EYPHQF 163
Cdd:PRK11176 413 ASLR-NQVALVSQNVH-----LFndTIANNIAYARTEQysrEQIEEAARMAYAMDFINK--MDNG---LDtvigENGVLL 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEgmSVLFITHDMGVVaEIADRTIVMYRGEAVE 243
Cdd:PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLSTI-EKADEILVVEDGEIVE 558
|
...
gi 636784243 244 TGT 246
Cdd:PRK11176 559 RGT 561
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
35-250 |
4.39e-18 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 84.21 E-value: 4.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 35 VSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSsridGAITLNGKDVLALPEKEMRRVRgndAAMIFQEPMTSLNPI 114
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKS-TLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARHR---AYLSQQQTPPFAMPV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 115 FtigrqisEALTCHGDIGKAEARAETV--RLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMAL-----ASRP--KLLI 185
Cdd:PRK03695 87 F-------QYLTLHQPDKTRTEAVASAlnEVAEALGLDDKLGR---SVNQLSGGEWQRVRLAAVVlqvwpDINPagQLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 186 ADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK03695 157 LDEPMNSLDVAQQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
334-547 |
4.70e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 84.80 E-value: 4.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA-VSLRRMRRSIQMIFQDPFASLNPR 412
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnKDIKQIRKKVGLVFQFPESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 413 mTVGAAVAEPITEHGLgSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVS 492
Cdd:PRK13649 102 -TVLKDVAFGPQNFGV-SQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 493 IKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELF 547
Cdd:PRK13649 180 GRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
309-559 |
5.39e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 85.14 E-value: 5.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDirggllgRKTG-AIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSV----------- 376
Cdd:PRK13651 3 IKVKNIVKIFN-------KKLPtELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkk 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 377 -SLDGYDVLSLDAVSLRR---------MRRSIQMIFQdpFASLNP-RMTVGAAVA-EPITehgLG-SGAQARDKAADLLE 443
Cdd:PRK13651 76 kTKEKEKVLEKLVIQKTRfkkikkikeIRRRVGVVFQ--FAEYQLfEQTIEKDIIfGPVS---MGvSKEEAKKRAAKYIE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 444 RVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVE 523
Cdd:PRK13651 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVL 229
|
250 260 270
....*....|....*....|....*....|....*.
gi 636784243 524 RVSHRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLM 559
Cdd:PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNME 265
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
30-236 |
7.72e-18 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 81.90 E-value: 7.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkgssridgaitlngkDVLALPEKEMRRVRGNDAAMIFQEpmT 109
Cdd:NF040873 6 PVLHGVDLTIPAGSLTAVVGPNGSGKS----TLLKVLA---------------GVLRPTSGTVRRAGGARVAYVPQR--S 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 SLNPIF--------TIGRQISEALTCHGDigkAEARAETVRLLEKVRIPNAASR-FDEyphqFSGGMRQRVMIAMALASR 180
Cdd:NF040873 65 EVPDSLpltvrdlvAMGRWARRGLWRRLT---RDDRAAVDDALERVGLADLAGRqLGE----LSGGQRQRALLAQGLAQE 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 181 PKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEiADRTIVM 236
Cdd:NF040873 138 ADLLLLDEPTTGLDAESRERIIALLAEEH-ARGATVVVVTHDLELVRR-ADPCVLL 191
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-250 |
1.13e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 86.26 E-value: 1.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 5 SSASASPVLSVRNLT-TAFlvdgdwkpvvRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKD 83
Cdd:PRK15439 261 QQAAGAPVLTVEDLTgEGF----------RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG----GRIMLNGKE 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 VLA-------------LPEKemRRVRGndaamIFQEPMTSLNPIftigrqiseALTcHGDIGKAEARAETVRLLEKVR-- 148
Cdd:PRK15439 327 INAlstaqrlarglvyLPED--RQSSG-----LYLDAPLAWNVC---------ALT-HNRRGFWIKPARENAVLERYRra 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 149 IPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAE 228
Cdd:PRK15439 390 LNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQ 468
|
250 260
....*....|....*....|..
gi 636784243 229 IADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK15439 469 MADRVLVMHQGEISGALTGAAI 490
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
337-548 |
1.15e-17 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 86.34 E-value: 1.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRmrrSIQMIFQDP----------- 405
Cdd:COG4618 350 GVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGR---HIGYLPQDVelfdgtiaeni 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 406 --FASLNPRMTVGAAvaepitehglgsgaqardKAADLLERVGLKPDmmkRY-------PHEFSGGQRQRICIARALALD 476
Cdd:COG4618 427 arFGDADPEKVVAAA------------------KLAGVHEMILRLPD---GYdtrigegGARLSGGQRQRIGLARALYGD 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 477 PKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVsHRVAVMYLGEIVEIGPRAELFS 548
Cdd:COG4618 486 PRLVVLDEPNSNLDDEGEAALAAAIRALKAR-GATVVVITHRPSLLAAV-DKLLVLRDGRVQAFGPRDEVLA 555
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
262-556 |
1.59e-17 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 87.10 E-value: 1.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 262 LLSAVPRLGSMADRKwplrFPVVDTTTGERREPVEVADTVDRRRTP-------ILEVKNLVTRFdiRGGLlgrkTGAIHA 334
Cdd:PLN03130 1188 LLTAVLRLASLAENS----LNAVERVGTYIDLPSEAPLVIENNRPPpgwpssgSIKFEDVVLRY--RPEL----PPVLHG 1257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VedvSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLdavSLRRMRRSIQMIFQDP-FASLNPRM 413
Cdd:PLN03130 1258 L---SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---GLMDLRKVLGIIPQAPvLFSGTVRF 1331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVgaavaEPITEHglgsgaqardKAADL---LERVGLKpDMMKRYP-----------HEFSGGQRQRICIARALALDPKV 479
Cdd:PLN03130 1332 NL-----DPFNEH----------NDADLwesLERAHLK-DVIRRNSlgldaevseagENFSVGQRQLLSLARALLRRSKI 1395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 480 IVADESVSALDVSIKAQVcnllmdlQQSLNLAF-----LFISHDMAVVERvSHRVAVMYLGEIVEIGPRAELFSNPQHAY 554
Cdd:PLN03130 1396 LVLDEATAAVDVRTDALI-------QKTIREEFksctmLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEGSAF 1467
|
..
gi 636784243 555 TK 556
Cdd:PLN03130 1468 SK 1469
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
307-550 |
1.75e-17 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 84.89 E-value: 1.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL 386
Cdd:PRK09536 2 PMIDVSDLSVEF-----------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 387 DAvslRRMRRSIQMIFQDpfASLNPRMTVGAAVAEPITEH-GLGSGAQARDKAA--DLLERVGLKpDMMKRYPHEFSGGQ 463
Cdd:PRK09536 71 SA---RAASRRVASVPQD--TSLSFEFDVRQVVEMGRTPHrSRFDTWTETDRAAveRAMERTGVA-QFADRPVTSLSGGE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFIsHDMAVVERVSHRVAVMYLGEIVEIGPR 543
Cdd:PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGPP 223
|
....*..
gi 636784243 544 AELFSNP 550
Cdd:PRK09536 224 ADVLTAD 230
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
29-250 |
1.92e-17 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 84.11 E-value: 1.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITlngkdVLALPEKemRRVRGNDAAMIFQEPM 108
Cdd:PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKS----TIARMILGMTSPDAGKIT-----VLGVPVP--ARARLARARIGVVPQF 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLNPIFTIgrqiSEALTCHGDIGKAEAR-AETV--RLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALASRPKLLI 185
Cdd:PRK13536 123 DNLDLEFTV----RENLLVFGRYFGMSTReIEAVipSLLEFARLESKA---DARVSDLSGGMKRRLTLARALINDPQLLI 195
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 186 ADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK13536 196 LDEPTTGLDPHARHLIWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
37-250 |
2.91e-17 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 81.05 E-value: 2.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 37 FDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDGAITLNGKDVLA-LPEKE----------MRRVRGNDAAMI 103
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIppAKGTVKVAGASPGKGWRHIGyVPQRHefawdfpisvAHTVMSGRTGHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 104 --FQEPmtslnpiftigrqisealtCHGDIGKAEARAETVRLLEKVRIPNAasrfdeyphQFSGGMRQRVMIAMALASRP 181
Cdd:TIGR03771 81 gwLRRP-------------------CVADFAAVRDALRRVGLTELADRPVG---------ELSGGQRQRVLVARALATRP 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 182 KLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRtIVMYRGEAVETGTTDDI 250
Cdd:TIGR03771 133 SVLLLDEPFTGLDMPTQELLTELFIELA-GAGTAILMTTHDLAQAMATCDR-VVLLNGRVIADGTPQQL 199
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
15-250 |
6.79e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 81.67 E-value: 6.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 15 VRNLTTAFLVDGDWK-PVVRDVSFDVMPGETVAIVGESGSGKS--VTSLSIMRLLAKGS-----------SRIDGAITLN 80
Cdd:PRK13651 5 VKNIVKIFNKKLPTElKALDNVSVEINQGEFIAIIGQTGSGKTtfIEHLNALLLPDTGTiewifkdeknkKKTKEKEKVL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 81 GKDVLALPE-------KEMRRVRGndaaMIFQEPMTSLnpiF--TIGRQISEALTCHGdIGKAEARAETVRLLEKVRIPN 151
Cdd:PRK13651 85 EKLVIQKTRfkkikkiKEIRRRVG----VVFQFAEYQL---FeqTIEKDIIFGPVSMG-VSKEEAKKRAAKYIELVGLDE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 152 aaSRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIAD 231
Cdd:PRK13651 157 --SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLDNVLEWTK 233
|
250
....*....|....*....
gi 636784243 232 RTIVMYRGEAVETGTTDDI 250
Cdd:PRK13651 234 RTIFFKDGKIIKDGDTYDI 252
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
29-526 |
7.70e-17 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 83.83 E-value: 7.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAK---GSSRIDGAITL----------NGKDVLALPEKEMRRV 95
Cdd:TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKS-TLLRIMAGVDKdfnGEARPQPGIKVgylpqepqldPTKTVRENVEEGVAEI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 96 RG-----NDAAMIFQEPMTSLNPIFTIGRQISEALTcHGDIGKAEARAEtvRLLEKVRIPNaasrFDEYPHQFSGGMRQR 170
Cdd:TIGR03719 97 KDaldrfNEISAKYAEPDADFDKLAAEQAELQEIID-AADAWDLDSQLE--IAMDALRCPP----WDADVTKLSGGERRR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTiqgQILDLIKMLQEEEGmSVLFITHDMGVVAEIADRTIVMYRGEAV-------- 242
Cdd:TIGR03719 170 VALCRLLLSKPDMLLLDEPTNHLDAE---SVAWLERHLQEYPG-TVVAVTHDRYFLDNVAGWILELDRGRGIpwegnyss 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 243 ----------ETGTTDDIFHR--------------GRHPYTRALLSAVPRLGSMADRKWP----LRFPVvdtttGERrep 294
Cdd:TIGR03719 246 wleqkqkrleQEEKEESARQKtlkrelewvrqspkGRQAKSKARLARYEELLSQEFQKRNetaeIYIPP-----GPR--- 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 295 veVADTVdrrrtpiLEVKNLVTRFDIRggLLgrktgaihaVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGG 374
Cdd:TIGR03719 318 --LGDKV-------IEAENLTKAFGDK--LL---------IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 375 SVsldgydvlsldavslrRMRRSIQMIFQDPF-ASLNPRMTVGAAVAEPITEHGLGS-GAQARD-------KAADLLERV 445
Cdd:TIGR03719 378 TI----------------EIGETVKLAYVDQSrDALDPNKTVWEEISGGLDIIKLGKrEIPSRAyvgrfnfKGSDQQKKV 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 446 GlkpdmmkryphEFSGGQRQRICIARALALDPKVIVADESVSALDVsikaqvcNLLMDLQQSLnLAF----LFISHDMAV 521
Cdd:TIGR03719 442 G-----------QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV-------ETLRALEEAL-LNFagcaVVISHDRWF 502
|
....*
gi 636784243 522 VERVS 526
Cdd:TIGR03719 503 LDRIA 507
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
5-264 |
9.64e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 80.60 E-value: 9.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 5 SSASASPVLSVRNLTTAFlvdGDWKpVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAK-----GSSRIDGAITL 79
Cdd:PRK14243 3 TLNGTETVLRTENLNVYY---GSFL-AVKNVWLDIPKNQITAFIGPSGCGKS----TILRCFNRlndliPGFRVEGKVTF 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 80 NGKDVLA--LPEKEMRRVRGndaaMIFQEPmtslNPI-FTIGRQISEALTCHGDIGKAEARAETvRLLEKVRIPNAASRF 156
Cdd:PRK14243 75 HGKNLYApdVDPVEVRRRIG----MVFQKP----NPFpKSIYDNIAYGARINGYKGDMDELVER-SLRQAALWDEVKDKL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 157 DEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEegMSVLFITHDMGVVAEIADRTIVM 236
Cdd:PRK14243 146 KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFF 223
|
250 260 270
....*....|....*....|....*....|....*..
gi 636784243 237 ---------YRGEAVETGTTDDIFHRGRHPYTRALLS 264
Cdd:PRK14243 224 nveltegggRYGYLVEFDRTEKIFNSPQQQATRDYVS 260
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
335-548 |
1.03e-16 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 83.55 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlsLDAVSLRRMRRSIQMIFQDpfASLNPrmt 414
Cdd:TIGR01842 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD---LKQWDRETFGKHIGYLPQD--VELFP--- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 vgAAVAEPITEHGLGSGAQARDKAADLlerVGLKpDMMKRYPHEF-----------SGGQRQRICIARALALDPKVIVAD 483
Cdd:TIGR01842 406 --GTVAENIARFGENADPEKIIEAAKL---AGVH-ELILRLPDGYdtvigpggatlSGGQRQRIALARALYGDPKLVVLD 479
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 484 ESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVShRVAVMYLGEIVEIGPRAELFS 548
Cdd:TIGR01842 480 EPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLLGCVD-KILVLQDGRIARFGERDEVLA 542
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
335-562 |
1.03e-16 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 80.06 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlsLDAVSLRRMRRSIQMIFQDPfasLNPRmt 414
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP---ISMLSSRQLARRLALLPQHH---LTPE-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 vGAAVAEpITEHG----------LGSGAQARDKAAdlLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADE 484
Cdd:PRK11231 90 -GITVRE-LVAYGrspwlslwgrLSAEDNARVNQA--MEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 485 SVSALDVSIKAQvcnlLMDLQQSLNLA---FLFISHDMAVVERVSHRVAVMYLGEIVEIGpraelfsNPQHAYTKKLMAA 561
Cdd:PRK11231 165 PTTYLDINHQVE----LMRLMRELNTQgktVVTVLHDLNQASRYCDHLVVLANGHVMAQG-------TPEEVMTPGLLRT 233
|
.
gi 636784243 562 V 562
Cdd:PRK11231 234 V 234
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
308-551 |
1.15e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 80.55 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFdirggllgrKTGAiHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslD 387
Cdd:PRK13647 4 IIEVEDLHFRY---------KDGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV---N 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDP----FASlnprmTVGAAVAEPITEHGLGsGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQ 463
Cdd:PRK13647 71 AENEKWVRSKVGLVFQDPddqvFSS-----TVWDDVAFGPVNMGLD-KDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 464 RQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPR 543
Cdd:PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222
|
....*...
gi 636784243 544 aELFSNPQ 551
Cdd:PRK13647 223 -SLLTDED 229
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
308-546 |
1.28e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 81.29 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDIR---GGLLG-------RKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVS 377
Cdd:COG4586 1 IIEVENLSKTYRVYekePGLKGalkglfrREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 378 LDGYDvlsldaVSLRRMR--RSIQMIF------------QDPFAsLNPRMtvgaavaepiteHGLgSGAQARDKAADLLE 443
Cdd:COG4586 81 VLGYV------PFKRRKEfaRRIGVVFgqrsqlwwdlpaIDSFR-LLKAI------------YRI-PDAEYKKRLDELVE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 444 RVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVE 523
Cdd:COG4586 141 LLDLG-ELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIE 219
|
250 260
....*....|....*....|...
gi 636784243 524 RVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:COG4586 220 ALCDRVIVIDHGRIIYDGSLEEL 242
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
337-546 |
1.45e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 83.33 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLrrmRRSIQMIFQDpfaslnprmTV- 415
Cdd:COG5265 376 GVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASL---RAAIGIVPQD---------TVl 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 416 --------------GAAVAEPItehglgsgAQARdkAADLL---------------ERvGLKpdmmkrypheFSGGQRQR 466
Cdd:COG5265 444 fndtiayniaygrpDASEEEVE--------AAAR--AAQIHdfieslpdgydtrvgER-GLK----------LSGGEKQR 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 467 ICIARALALDPKVIVADESVSALDvSIKAQvcnllmDLQQSLNLA-----FLFISHdmavveRVS-----HRVAVMYLGE 536
Cdd:COG5265 503 VAIARTLLKNPPILIFDEATSALD-SRTER------AIQAALREVargrtTLVIAH------RLStivdaDEILVLEAGR 569
|
250
....*....|
gi 636784243 537 IVEIGPRAEL 546
Cdd:COG5265 570 IVERGTHAEL 579
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
308-538 |
1.62e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 79.74 E-value: 1.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 308 ILEVKNLVTRFDIRGGLlgrktgAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLD 387
Cdd:COG1101 1 MLELKNLSKTFNPGTVN------EKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVslRRMRRsIQMIFQDPFASLNPRMTV----------GAAvaepiteHGLGSG------AQARDKAADL---LE----- 443
Cdd:COG1101 75 EY--KRAKY-IGRVFQDPMMGTAPSMTIeenlalayrrGKR-------RGLRRGltkkrrELFRELLATLglgLEnrldt 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 444 RVGLkpdmmkrypheFSGGQRQriciarALAL------DPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISH 517
Cdd:COG1101 145 KVGL-----------LSGGQRQ------ALSLlmatltKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTH 207
|
250 260
....*....|....*....|...
gi 636784243 518 DM--AVveRVSHRVAVMYLGEIV 538
Cdd:COG1101 208 NMeqAL--DYGNRLIMMHEGRII 228
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
330-541 |
1.67e-16 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 78.73 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVslrrmrrsiqmifqdpfASL 409
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG-----------------GGF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRMTvgaaVAEPI----TEHGLgSGAQARDKAADLLERVGLKPDM---MKRYphefSGGQRQRICIARALALDPKVIVA 482
Cdd:cd03220 96 NPELT----GRENIylngRLLGL-SRKEIDEKIDEIIEFSELGDFIdlpVKTY----SSGMKARLAFAIATALEPDILLI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 483 DESVSALDVSIKAQVCNLLMDLQQSLNlAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
13-236 |
1.75e-16 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 76.72 E-value: 1.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkgssridgaitlngkdvlalpekem 92
Cdd:cd03221 1 IELENLSKTY---GG-KLLLKDISLTINPGDRIGLVGRNGAGKS----TLLKLIA------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 rrvrgndaamifqepmtslnpiftigrqisealtchgdiGKAEARAETVRLLEKVRIPnaasrfdeYPHQFSGGMRQRVM 172
Cdd:cd03221 48 ---------------------------------------GELEPDEGIVTWGSTVKIG--------YFEQLSGGEKMRLA 80
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 173 IAMALASRPKLLIADEPTTALDVTiqgQILDLIKMLQEEEGmSVLFITHDMGVVAEIADRTIVM 236
Cdd:cd03221 81 LAKLLLENPNLLLLDEPTNHLDLE---SIEALEEALKEYPG-TVILVSHDRYFLDQVATKIIEL 140
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
29-250 |
2.02e-16 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 79.65 E-value: 2.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVRGndaaMIFQEPM 108
Cdd:PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKS----TLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG----LLAQNAT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 T----SLNPIFTIGRQISEALTCHGdigKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRVMIAMALASRPKLL 184
Cdd:PRK10253 92 TpgdiTVQELVARGRYPHQPLFTRW---RKEDEEAVTKAMQATGITHLA---DQSVDTLSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 185 IADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK10253 166 LLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
12-251 |
2.17e-16 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 79.17 E-value: 2.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKE 91
Cdd:PRK10895 3 TLTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA----GNIIIDDEDISLLPLHA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mRRVRGndAAMIFQEPmtSLNPIFTIGRQISEALTCHGDIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGMRQRV 171
Cdd:PRK10895 75 -RARRG--IGYLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLR---DSMGQSLSGGERRRV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTiqgQILDLIKMLQ--EEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDD 249
Cdd:PRK10895 147 EIARALAANPKFILLDEPFAGVDPI---SVIDIKRIIEhlRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTE 223
|
..
gi 636784243 250 IF 251
Cdd:PRK10895 224 IL 225
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
331-537 |
2.62e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 79.29 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 331 AIHAVEdvsFNLFQGETLSLVGESGCGKSTTGRSITRLVQPN---GGSVSLDGYDVLSLD--AVSLRRMRRSIQMIFQDp 405
Cdd:PRK09984 19 ALHAVD---LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDksaGSHIELLGRTVQREGrlARDIRKSRANTGYIFQQ- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 406 FASLNpRMTV------GAAVAEPITEHGLGSGAQA-RDKAADLLERVGlkpdmMKRYPHE----FSGGQRQRICIARALA 474
Cdd:PRK09984 95 FNLVN-RLSVlenvliGALGSTPFWRTCFSWFTREqKQRALQALTRVG-----MVHFAHQrvstLSGGQQQRVAIARALM 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 475 LDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:PRK09984 169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
338-563 |
2.68e-16 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 83.10 E-value: 2.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 338 VSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLdavSLRRMRRSIQMIFQDP-FASLNPRMTVg 416
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF---GLTDLRRVLSIIPQSPvLFSGTVRFNI- 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 417 aavaEPITEHglgsgaqardKAADL---LERVGLKpDMMKRYP-----------HEFSGGQRQRICIARALALDPKVIVA 482
Cdd:PLN03232 1331 ----DPFSEH----------NDADLweaLERAHIK-DVIDRNPfgldaevseggENFSVGQRQLLSLARALLRRSKILVL 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 483 DESVSALDVSIKAQVCNLLMDLQQSLNLafLFISHDMAVVERVShRVAVMYLGEIVEIGPRAELFSNPQHAYTKKLMAAV 562
Cdd:PLN03232 1396 DEATASVDVRTDSLIQRTIREEFKSCTM--LVIAHRLNTIIDCD-KILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472
|
.
gi 636784243 563 P 563
Cdd:PLN03232 1473 P 1473
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
29-285 |
2.76e-16 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 79.42 E-value: 2.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEKEMRRVRgNDAAMIFQEP 107
Cdd:PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKT----TLLRLIG-GQIAPDhGEILFDGENIPAMSRSRLYTVR-KRMSMLFQSG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 108 --MTSLNPIFTIGRQISEaltcHGDIGKAEARAETVRLLEKVRIPNAASRFdeyPHQFSGGMRQRVMIAMALASRPKLLI 185
Cdd:PRK11831 94 alFTDMNVFDNVAYPLRE----HTQLPAPLLHSTVMMKLEAVGLRGAAKLM---PSELSGGMARRAALARAIALEPDLIM 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 186 ADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIfHRGRHPYTRALLSA 265
Cdd:PRK11831 167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL-QANPDPRVRQFLDG 245
|
250 260
....*....|....*....|
gi 636784243 266 VprlgsmADRKWPLRFPVVD 285
Cdd:PRK11831 246 I------ADGPVPFRYPAGD 259
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
12-242 |
3.42e-16 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 77.30 E-value: 3.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA---KGSSRIDGAITLNGKDVlalp 88
Cdd:cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCS----TLLKALAnrtEGNVSVEGDIHYNGIPY---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 eKEMRRVRGNDAAMIFQEpmTSLNPIFTIGRQISEALTCHGDigkaearaETVRllekvripnaasrfdeyphQFSGGMR 168
Cdd:cd03233 75 -KEFAEKYPGEIIYVSEE--DVHFPTLTVRETLDFALRCKGN--------EFVR-------------------GISGGER 124
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVA-EIADRTIVMYRGEAV 242
Cdd:cd03233 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIyDLFDKVLVLYEGRQI 199
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
13-221 |
3.56e-16 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 76.42 E-value: 3.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtafLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAK----GSSRIdgaITLNGKDVLALP 88
Cdd:cd03223 1 IELENLS---LATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKS----SLFRALAGlwpwGSGRI---GMPEGEDLLFLP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKemrrvrgndaamifqepmtslnPIFTIGRqisealtchgdigkaearaetvrLLEKVRipnaasrfdeYP--HQFSGG 166
Cdd:cd03223 71 QR----------------------PYLPLGT-----------------------LREQLI----------YPwdDVLSGG 95
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 167 MRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlqeEEGMSVLFITH 221
Cdd:cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK----ELGITVISVGH 146
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
7-249 |
4.12e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 81.79 E-value: 4.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 7 ASASPVLSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLA 86
Cdd:PRK11160 333 AADQVSLTLNNVS--FTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKS----TLLQLLTRAWDPQQGEILLNGQPIAD 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 87 LPEKEMRrvrgndAAMIF--QEPMtslnpIFTigRQISEALTchgdIGKAEAR-AETVRLLEKVRIPNAASRFD------ 157
Cdd:PRK11160 407 YSEAALR------QAISVvsQRVH-----LFS--ATLRDNLL----LAAPNASdEALIEVLQQVGLEKLLEDDKglnawl 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 158 -EYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIkmLQEEEGMSVLFITHDMGVVAEIaDRTIVM 236
Cdd:PRK11160 470 gEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL--AEHAQNKTVLMITHRLTGLEQF-DRICVM 546
|
250
....*....|...
gi 636784243 237 YRGEAVETGTTDD 249
Cdd:PRK11160 547 DNGQIIEQGTHQE 559
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
11-250 |
4.33e-16 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 80.66 E-value: 4.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEK 90
Cdd:PRK09536 2 PMIDVSDLSVEF---GD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA----GTVLVAGDDVEALSAR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EM-RRVrgndaAMIFQEpmTSLNPIFTiGRQISEA--------LTCHGDIGKAEARaetvRLLEKVRIPNAASR-FDEyp 160
Cdd:PRK09536 74 AAsRRV-----ASVPQD--TSLSFEFD-VRQVVEMgrtphrsrFDTWTETDRAAVE----RAMERTGVAQFADRpVTS-- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 161 hqFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGE 240
Cdd:PRK09536 140 --LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIHDLDLAARYCDELVLLADGR 216
|
250
....*....|
gi 636784243 241 AVETGTTDDI 250
Cdd:PRK09536 217 VRAAGPPADV 226
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
11-245 |
4.33e-16 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 79.46 E-value: 4.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAKGSSRIDGAITLNGKDVLALPEK 90
Cdd:PRK13537 6 APIDFRNVEKRY---GD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTT----LRMLLGLTHPDAGSISLCGEPVPSRARH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVrgndaAMIFQepMTSLNPIFTIgrqiSEALTCHG---DIGKAEARAETVRLLEKVRIPNAAsrfDEYPHQFSGGM 167
Cdd:PRK13537 78 ARQRV-----GVVPQ--FDNLDPDFTV----RENLLVFGryfGLSAAAARALVPPLLEFAKLENKA---DAKVGELSGGM 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
309-522 |
5.04e-16 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 82.38 E-value: 5.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFDIRGGllgrktgaIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDgyDVLSLDA 388
Cdd:PTZ00265 383 IQFKNVRFHYDTRKD--------VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN--DSHNLKD 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDPFASLNP----------RMTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMM------ 452
Cdd:PTZ00265 453 INLKWWRSKIGVVSQDPLLFSNSiknnikyslySLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSnttdsn 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 453 ------KRYP----------------HEF-------------------SGGQRQRICIARALALDPKVIVADESVSALDV 491
Cdd:PTZ00265 533 eliemrKNYQtikdsevvdvskkvliHDFvsalpdkyetlvgsnasklSGGQKQRISIARAIIRNPKILILDEATSSLDN 612
|
250 260 270
....*....|....*....|....*....|.
gi 636784243 492 SIKAQVCNLLMDLQQSLNLAFLFISHDMAVV 522
Cdd:PTZ00265 613 KSEYLVQKTINNLKGNENRITIIIAHRLSTI 643
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
12-250 |
5.24e-16 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 81.24 E-value: 5.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLL------AKGSSRIDGAiTLN----- 80
Cdd:TIGR01842 316 HLSVENVT--IVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKS----TLARLIvgiwppTSGSVRLDGA-DLKqwdre 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 81 --GKDVLALPEkEMRRVRGNDAAMI--FQEPMTSlnpiftigRQISEAltchgdigkaeARAETVRLLeKVRIPNAasrF 156
Cdd:TIGR01842 389 tfGKHIGYLPQ-DVELFPGTVAENIarFGENADP--------EKIIEA-----------AKLAGVHEL-ILRLPDG---Y 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 157 DEY----PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVaEIADR 232
Cdd:TIGR01842 445 DTVigpgGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPSLL-GCVDK 522
|
250
....*....|....*...
gi 636784243 233 TIVMYRGEAVETGTTDDI 250
Cdd:TIGR01842 523 ILVLQDGRIARFGERDEV 540
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
335-546 |
7.53e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 77.43 E-value: 7.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSL-RRMrrSIqmIFQDPfaSLNPRM 413
Cdd:COG4604 17 LDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELaKRL--AI--LRQEN--HINSRL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAVA---EPiteHGLGS-GAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:COG4604 91 TVRELVAfgrFP---YSKGRlTAEDREIIDEAIAYLDLE-DLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:COG4604 167 DMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEI 223
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
31-250 |
1.03e-15 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 77.56 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLA--------KGSSRIDGAITLNGKDVLALPEKEMRRVRgndaAM 102
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKS----TLLKALAgdltgggaPRGARVTGDVTLNGEPLAAIDAPRLARLR----AV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 103 IFQEPMT----SLNPIFTIGR----QISEALTCH-GDIG-KAEARAETVRLLEKVRIpnaasrfdeyphQFSGGMRQRVM 172
Cdd:PRK13547 88 LPQAAQPafafSAREIVLLGRyphaRRAGALTHRdGEIAwQALALAGATALVGRDVT------------TLSGGELARVQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 173 IAMALA---------SRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVE 243
Cdd:PRK13547 156 FARVLAqlwpphdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA 235
|
....*..
gi 636784243 244 TGTTDDI 250
Cdd:PRK13547 236 HGAPADV 242
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
30-267 |
1.30e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 80.79 E-value: 1.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRVrgndAAMIFQEPMT 109
Cdd:PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKS----SMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV----LSIIPQSPVL 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 SLNPI-FTIgrqisEALTCHGDIGKAEAraetvrlLEKVRIPNAASR--------FDEYPHQFSGGMRQRVMIAMALASR 180
Cdd:PLN03232 1322 FSGTVrFNI-----DPFSEHNDADLWEA-------LERAHIKDVIDRnpfgldaeVSEGGENFSVGQRQLLSLARALLRR 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 181 PKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDDIFHRGRHPYTR 260
Cdd:PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIR--EEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
|
....*..
gi 636784243 261 ALLSAVP 267
Cdd:PLN03232 1467 MVHSTGP 1473
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
350-548 |
1.59e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 76.97 E-value: 1.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 350 LVGESGCGKSTTGRSITRLVQPNGGSVSLDGyDVLSLDAVSLRRMRRSIQMIFQDPFASLNpRMTVGAAVAEPITEHGLG 429
Cdd:PRK13638 32 LVGANGCGKSTLFMNLSGLLRPQKGAVLWQG-KPLDYSKRGLLALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRNLGVP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 430 SGAQAR--DKAADLLERVGLKPDMMKRYPHefsgGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQS 507
Cdd:PRK13638 110 EAEITRrvDEALTLVDAQHFRHQPIQCLSH----GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 636784243 508 LNlAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFS 548
Cdd:PRK13638 186 GN-HVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
34-540 |
1.65e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 79.39 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRvrgNDAAMIFQEpmtsLNP 113
Cdd:PRK10982 16 NVNLKVRPHSIHALMGENGAGKS----TLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE---NGISMVHQE----LNL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 114 IFT--------IGRQISEALTchgdIGKAEARAETVRLLEKVRIpnaasrfDEYPHQ----FSGGMRQRVMIAMALASRP 181
Cdd:PRK10982 85 VLQrsvmdnmwLGRYPTKGMF----VDQDKMYRDTKAIFDELDI-------DIDPRAkvatLSVSQMQMIEIAKAFSYNA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 182 KLLIADEPTTALDVTIQGQILDLIKMLQEEeGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG-----TTDDIfhrgrh 256
Cdd:PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQplaglTMDKI------ 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 257 pytrallsavprLGSMADRKWPLRFPVVDTTTGErrepvevadtvdrrrtPILEVKNLVTRFDirggllgrktgaiHAVE 336
Cdd:PRK10982 227 ------------IAMMVGRSLTQRFPDKENKPGE----------------VILEVRNLTSLRQ-------------PSIR 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDA----------VSLRRMRRSIQMIFQDPF 406
Cdd:PRK10982 266 DVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNAneainhgfalVTEERRSTGIYAYLDIGF 345
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 407 ASLNprmtvgAAVAEPITEHGLGSGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESV 486
Cdd:PRK10982 346 NSLI------SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 636784243 487 SALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 540
Cdd:PRK10982 420 RGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGI 472
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
12-245 |
1.88e-15 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 75.77 E-value: 1.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLaKGSSRIDGAITLNGKdvlALPEKE 91
Cdd:cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV-EGGGTTSGQILFNGQ---PRKPDQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRR----VRGNDAamifqepmtsLNPIFTIGRQISEALTCHGDIGKAEA----RAETVRL----LEKVRipnaasrfDEY 159
Cdd:cd03234 79 FQKcvayVRQDDI----------LLPGLTVRETLTYTAILRLPRKSSDAirkkRVEDVLLrdlaLTRIG--------GNL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 160 PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQgqiLDLIKMLQE--EEGMSVLFITHDMGV-VAEIADRTIVM 236
Cdd:cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA---LNLVSTLSQlaRRNRIVILTIHQPRSdLFRLFDRILLL 217
|
....*....
gi 636784243 237 YRGEAVETG 245
Cdd:cd03234 218 SSGEIVYSG 226
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
31-242 |
1.99e-15 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 76.07 E-value: 1.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMRRvrgnDAAMIFQEpmts 110
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKT----TLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR----EAVAIVPE---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 lnpiftiGRQISEALTCHGDIGKAEARAETVRLLEKV-RIPNAASRFDEYPHQ----FSGGMRQRVMIAMALASRPKLLI 185
Cdd:PRK11614 88 -------GRRVFSRMTVEENLAMGGFFAERDQFQERIkWVYELFPRLHERRIQragtMSGGEQQMLAIGRALMSQPRLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 186 ADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAV 242
Cdd:PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLR-EQGMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
337-547 |
2.15e-15 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 76.28 E-value: 2.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPN-GGSVSLDGYDvlsLDAVSLRRMRRSIQMIFQDPFASLNPRMTV 415
Cdd:COG1119 21 DISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTyGNDVRLFGER---RGGEDVWELRKRIGLVSPALQLRFPRDETV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 416 GAAVAepitehglgSGAQA------------RDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVAD 483
Cdd:COG1119 98 LDVVL---------SGFFDsiglyreptdeqRERARELLELLGLA-HLADRPFGTLSQGEQRRVLIARALVKDPELLILD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 484 ESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMA-VVERVSHrVAVMYLGEIVEIGPRAELF 547
Cdd:COG1119 168 EPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEeIPPGITH-VLLLKDGRVVAAGPKEEVL 231
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
335-551 |
2.15e-15 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 76.09 E-value: 2.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV--LSLDAvslrRMRRSIQMIFQDpfASLNPR 412
Cdd:PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIslLPLHA----RARRGIGYLPQE--ASIFRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 413 MTVGAAVAEPITEHGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVS 492
Cdd:PRK10895 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 493 IKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:PRK10895 172 SVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
29-257 |
2.25e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 79.32 E-value: 2.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSRIDGAITLNGKDVLAlpeKEMRRVrgndAAMIFQEPM 108
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKT-TLMNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRAI----SAYVQQDDL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 tsLNPIFTIGRQ--ISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRFDEYPHQ---FSGGMRQRVMIAMALASRPKL 183
Cdd:TIGR00955 110 --FIPTLTVREHlmFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRvkgLSGGERKRLAFASELLTDPPL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 184 LIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHD-MGVVAEIADRTIVMYRGEAVETGTTD---DIFHRGRHP 257
Cdd:TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLA-QKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDqavPFFSDLGHP 264
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
334-550 |
2.28e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 76.56 E-value: 2.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDvlSLDAVSLRRMRRSIQMIFQDPFASLnprm 413
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID--TGDFSKLQGIRKLVGIVFQNPETQF---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 tVGAAVAEPIT---EHGLGSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALD 490
Cdd:PRK13644 91 -VGRTVEEDLAfgpENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 491 VSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVErVSHRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:PRK13644 169 PDSGIAVLERIKKLHEK-GKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLSDV 226
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-249 |
3.79e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 78.29 E-value: 3.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 4 VSSASASPVLSVRNLTTAflvdgDWKPVvRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKD 83
Cdd:PRK09700 257 VSNLAHETVFEVRNVTSR-----DRKKV-RDISFSVCRGEILGFAGLVGSGRT----ELMNCLFGVDKRAGGEIRLNGKD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 VLalPEKEMRRVRGNDAAMIFQEPMTSLNPIFTIGRQ--ISEALTCHGDIG-------KAEAR-AETVRLLEKVRipnaA 153
Cdd:PRK09700 327 IS--PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNmaISRSLKDGGYKGamglfheVDEQRtAENQRELLALK----C 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 154 SRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRT 233
Cdd:PRK09700 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDRI 479
|
250
....*....|....*.
gi 636784243 234 IVMYRGEAVETGTTDD 249
Cdd:PRK09700 480 AVFCEGRLTQILTNRD 495
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
320-548 |
3.95e-15 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 75.79 E-value: 3.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 320 IRGGLLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAvslRRMRRSIQ 399
Cdd:PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS---KEVARRIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 400 MIFQDpfASLNPRMTVGAAVAEPITEHG-LGSGAQARDKAA--DLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALD 476
Cdd:PRK10253 85 LLAQN--ATTPGDITVQELVARGRYPHQpLFTRWRKEDEEAvtKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 477 PKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFS 548
Cdd:PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
14-252 |
4.02e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 77.38 E-value: 4.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 14 SVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEmr 93
Cdd:PRK11000 5 TLRNVTKAY---GD-VVISKDINLDIHEGEFVVFVGPSGCGKS----TLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 94 rvRGndAAMIFQEpmTSLNPIFTIGRQISEALTCHGdIGKAEARAetvRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMI 173
Cdd:PRK11000 75 --RG--VGMVFQS--YALYPHLSVAENMSFGLKLAG-AKKEEINQ---RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 174 AMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFH 252
Cdd:PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-249 |
5.67e-15 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 77.80 E-value: 5.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLnGKDV--- 84
Cdd:COG0488 311 LGKKVLELEGLSKSY---GD-KTLLDDLSLRIDRGDRIGLIGPNGAGKS----TLLKLLAGELEPDSGTVKL-GETVkig 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 -LAlpekemrrvrgndaamifQEPMT---SLNPIFTIgRQISEALTchgdigKAEARAetvrLLEKVRIPNAasRFDEYP 160
Cdd:COG0488 382 yFD------------------QHQEEldpDKTVLDEL-RDGAPGGT------EQEVRG----YLGRFLFSGD--DAFKPV 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 161 HQFSGGMRQRVMIAMALASRPKLLIADEPTTALDV-TIQGqildLIKMLQEEEGmSVLFITHDMGVVAEIADRTIVMYRG 239
Cdd:COG0488 431 GVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIeTLEA----LEEALDDFPG-TVLLVSHDRYFLDRVATRILEFEDG 505
|
250
....*....|.
gi 636784243 240 EAVE-TGTTDD 249
Cdd:COG0488 506 GVREyPGGYDD 516
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
344-546 |
7.73e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 74.82 E-value: 7.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 344 QGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLrrMRRSIQMIFQDPFASlnpRMTVGAAVAepI 423
Cdd:PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF--ARKVAYLPQQLPAAE---GMTVRELVA--I 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 424 TE---HG-LGS-GAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVC 498
Cdd:PRK10575 109 GRypwHGaLGRfGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 636784243 499 NLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAEL 546
Cdd:PRK10575 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
32-245 |
1.08e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 74.77 E-value: 1.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSVTSLSI--MRLLAKGSsridgaITLNGKDVLALPEKEMRRVRGndaaMIFQEPMt 109
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLngIYLPQRGR------VKVMGREVNAENEKWVRSKVG----LVFQDPD- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 slNPIFtigrqiseALTCHGDI--GKAEARAETVRLLEKVRIPNAASRFDEY----PHQFSGGMRQRVMIAMALASRPKL 183
Cdd:PRK13647 90 --DQVF--------SSTVWDDVafGPVNMGLDKDEVERRVEEALKAVRMWDFrdkpPYHLSYGQKKRVAIAGVLAMDPDV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 184 LIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETG 245
Cdd:PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLH-NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
9-222 |
1.41e-14 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 73.21 E-value: 1.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 9 ASPVLSVRNLttAFLVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALP 88
Cdd:PRK10247 4 NSPLLQLQNV--GYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKS----TLLKIVASLISPTSGTLLFEGEDISTLK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKEMRRvrgnDAAMIFQEPMtslnpIFtiGRQISEALTCHGDI-GKAEARAETVRLLEKVRIPNaaSRFDEYPHQFSGGM 167
Cdd:PRK10247 76 PEIYRQ----QVSYCAQTPT-----LF--GDTVYDNLIFPWQIrNQQPDPAIFLDDLERFALPD--TILTKNIAELSGGE 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHD 222
Cdd:PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
32-251 |
1.50e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 74.15 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 32 VRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDgaitlngkdVLALPEKemRRVRGNDAAMIFQEPMTS- 110
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS---------ILGQPTR--QALQKNLVAYVPQSEEVDw 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 111 -----LNPIFTIGRqisealtcHGDIG---KAEARaetvrllEKVRIPNAASRFD--EYPH----QFSGGMRQRVMIAMA 176
Cdd:PRK15056 92 sfpvlVEDVVMMGR--------YGHMGwlrRAKKR-------DRQIVTAALARVDmvEFRHrqigELSGGQKKRVFLARA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 177 LASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTiVMYRGEAVETGTTDDIF 251
Cdd:PRK15056 157 IAQQGQVILLDEPFTGVDVKTEARIISLLRELR-DEGKTMLVSTHNLGSVTEFCDYT-VMVKGTVLASGPTETTF 229
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
336-530 |
1.99e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 76.26 E-value: 1.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 336 EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDG-------------------YDVLSLDAVSLRRMRR 396
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKglrigylpqeppldddltvLDTVLDGDAELRALEA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 397 SIQMIFQDPfASLNPRMTVGAAVAEPITEHGlgsGAQARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALD 476
Cdd:COG0488 95 ELEELEAKL-AEPDEDLERLAELQEEFEALG---GWEAEARAEEILSGLGFPEEDLDRPVSELSGGWRRRVALARALLSE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 477 PKVIVADESVSALDV-SIkaqvcNLLMDLQQSLNLAFLFISHDMAVVERVSHRVA 530
Cdd:COG0488 171 PDLLLLDEPTNHLDLeSI-----EWLEEFLKNYPGTVLVVSHDRYFLDRVATRIL 220
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
164-490 |
3.88e-14 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 75.93 E-value: 3.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEE-EGMSVLFITHDMGvVAEIADRTIVMYRGEAV 242
Cdd:NF033858 138 SGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAErPGMSVLVATAYME-EAERFDWLVAMDAGRVL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 243 ETGTTDDIFHRGRHP-----YTrALLSAVPRLGsmadrkwplRFPVVDTttgeRREPVEVADtvdrrrtPILEVKNLVTR 317
Cdd:NF033858 217 ATGTPAELLARTGADtleaaFI-ALLPEEKRRG---------HQPVVIP----PRPADDDDE-------PAIEARGLTMR 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 318 FdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDA--VSLRR-- 393
Cdd:NF033858 276 F-----------GDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV---DAgdIATRRrv 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 394 --MRRSiqmiFqdpfaSLNPRMTvgaaVAEPITEH----GLgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRI 467
Cdd:NF033858 342 gyMSQA----F-----SLYGELT----VRQNLELHarlfHL-PAAEIAARVAEMLERFDLA-DVADALPDSLPLGIRQRL 406
|
330 340
....*....|....*....|...
gi 636784243 468 CIARALALDPKVIVADESVSALD 490
Cdd:NF033858 407 SLAVAVIHKPELLILDEPTSGVD 429
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
335-544 |
4.17e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 73.71 E-value: 4.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSldavSLRRMRRSIQMIFQdpFASLNPRMT 414
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA----RARLARARIGVVPQ--FDNLDLEFT 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 vgaaVAEPITEHGLGSGAQARDKAA---DLLERVGLKPDMMKRYPhEFSGGQRQRICIARALALDPKVIVADESVSALDV 491
Cdd:PRK13536 131 ----VRENLLVFGRYFGMSTREIEAvipSLLEFARLESKADARVS-DLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 636784243 492 SIKAQVCNLLMDLqQSLNLAFLFISHDMAVVERVSHRVAVMYLG-EIVEIGPRA 544
Cdd:PRK13536 206 HARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVLEAGrKIAEGRPHA 258
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
105-250 |
4.54e-14 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 74.00 E-value: 4.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 105 QEPMTSLNPIFTIGRQIsealtchgDIGKAEARAETVRLLEKVRIPNAASRfdeYPHQFSGGMRQRVMIAMALASRPKLL 184
Cdd:NF000106 98 RESFSGRENLYMIGR*L--------DLSRKDARARADELLERFSLTEAAGR---AAAKYSGGMRRRLDLAASMIGRPAVL 166
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 185 IADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:NF000106 167 YLDEPTTGLDPRTRNEVWDEVRSMV-RDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
10-226 |
6.11e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 72.07 E-value: 6.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAITLNgkdVLALPE 89
Cdd:PRK09544 2 TSLVSLENVSVSF---GQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLR---IGYVPQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KemrrvrgndaamIFQEPMTSLnpifTIGRQIS-EALTCHGDIGKAEARAETVRLLEkvripnaasrfdeYPHQ-FSGGM 167
Cdd:PRK09544 75 K------------LYLDTTLPL----TVNRFLRlRPGTKKEDILPALKRVQAGHLID-------------APMQkLSGGE 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVV 226
Cdd:PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
325-552 |
1.28e-13 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 71.40 E-value: 1.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 325 LGRKTGAIhaVEDVSFNLFQGETLSLVGESGCGKSTTGRS----ITRLVQPNG----GSVSLDGYDVLSLDAVSLRRMRR 396
Cdd:PRK13547 9 VARRHRAI--LRDLSLRIEPGRVTALLGRNGAGKSTLLKAlagdLTGGGAPRGarvtGDVTLNGEPLAAIDAPRLARLRA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 397 SIQMIFQDPFAslnprMTVGAAVAEPITEHGLGSGAQA---RDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARAL 473
Cdd:PRK13547 87 VLPQAAQPAFA-----FSAREIVLLGRYPHARRAGALThrdGEIAWQALALAGATA-LVGRDVTTLSGGELARVQFARVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 474 A---------LDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRA 544
Cdd:PRK13547 161 AqlwpphdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240
|
....*...
gi 636784243 545 ELFSnPQH 552
Cdd:PRK13547 241 DVLT-PAH 247
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
335-543 |
1.32e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 69.86 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRL--VQPNGGSVSLDGYDVLSLDAVSlrRMRRSIQMIFQdpfaslnpr 412
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEE--RARLGIFLAFQ--------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 413 mtvgaavaEPITEHGLgsgaqardKAADLLervglkpdmmkRYPHE-FSGGQRQRICIARALALDPKVIVADESVSALDV 491
Cdd:cd03217 85 --------YPPEIPGV--------KNADFL-----------RYVNEgFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 636784243 492 SIKAQVCNLLMDLqQSLNLAFLFISHDMAVVERV-SHRVAVMYLGEIVEIGPR 543
Cdd:cd03217 138 DALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
140-531 |
1.48e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 73.69 E-value: 1.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 140 TVR-LLEKVripNAASRFDEYPHQF-------------SGGMRQRVMIAMALASRPKLLIADEPTTALDVtiqGQILDLI 205
Cdd:PRK13409 179 KVReLLKKV---DERGKLDEVVERLglenildrdiselSGGELQRVAIAAALLRDADFYFFDEPTSYLDI---RQRLNVA 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 206 KMLQEE-EGMSVLFITHDMGVVAEIADRTIVMYrGEAVETGttddIFhrgRHPY-TR----ALLSAVPRLGSMADRKWPL 279
Cdd:PRK13409 253 RLIRELaEGKYVLVVEHDLAVLDYLADNVHIAY-GEPGAYG----VV---SKPKgVRvginEYLKGYLPEENMRIRPEPI 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 280 RFpvvdtttgERREPvevadTVDRRRTPILEVKNLVTRFDirGGLLGRKTGAIHavedvsfnlfQGETLSLVGESGCGKS 359
Cdd:PRK13409 325 EF--------EERPP-----RDESERETLVEYPDLTKKLG--DFSLEVEGGEIY----------EGEVIGIVGPNGIGKT 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 360 TTGRSITRLVQPNGGSVSLDgydvlsLDaVSLRRmrrsiQMIFQDPFaslnprMTVGA---AVAEPITEHGLGSgaqard 436
Cdd:PRK13409 380 TFAKLLAGVLKPDEGEVDPE------LK-ISYKP-----QYIKPDYD------GTVEDllrSITDDLGSSYYKS------ 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 437 kaaDLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFIS 516
Cdd:PRK13409 436 ---EIIKPLQLER-LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVD 511
|
410
....*....|....*
gi 636784243 517 HDMAVVERVSHRVAV 531
Cdd:PRK13409 512 HDIYMIDYISDRLMV 526
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
13-523 |
2.12e-13 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 73.06 E-value: 2.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLA-LPEKE 91
Cdd:PRK11147 1 MSLISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKS----TLMKILNGEVLLDDGRIIYEQDLIVArLQQDP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGN----------DAA-----------MIFQEPMTS-LNPIFTIGRQISealtcHGDIGKAEARAETVrlLEKVRI 149
Cdd:PRK11147 76 PRNVEGTvydfvaegieEQAeylkryhdishLVETDPSEKnLNELAKLQEQLD-----HHNLWQLENRINEV--LAQLGL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 150 pNAASRFDEyphqFSGGMRQRVMIAMALASRPKLLIADEPTTALDV-TIQGqildLIKMLQEEEGmSVLFITHDMGVVAE 228
Cdd:PRK11147 149 -DPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIeTIEW----LEGFLKTFQG-SIIFISHDRSFIRN 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 229 IADRTIVMYRGEAVETGTTDDIFHRGRHPYTR--ALLSAvprlgsMADRK------WpLRFPVVDTTT------------ 288
Cdd:PRK11147 219 MATRIVDLDRGKLVSYPGNYDQYLLEKEEALRveELQNA------EFDRKlaqeevW-IRQGIKARRTrnegrvralkal 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 289 -GERREPVEV-------ADTVDRRRTPILEVKNLvtRFDIRGGLLgrktgaihaVEDVSFNLFQGETLSLVGESGCGKST 360
Cdd:PRK11147 292 rRERSERREVmgtakmqVEEASRSGKIVFEMENV--NYQIDGKQL---------VKDFSAQVQRGDKIALIGPNGCGKTT 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 361 TGRSITRLVQPNGGSVSLDgydvLSLDAVSLRRMRrsiqmifqdpfASLNPRMTVGAAVAEPITE--------HGLGsga 432
Cdd:PRK11147 361 LLKLMLGQLQADSGRIHCG----TKLEVAYFDQHR-----------AELDPEKTVMDNLAEGKQEvmvngrprHVLG--- 422
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 433 qardkaadLLERVgLKPDMMKRYP-HEFSGGQRQRICIARaLALDP-KVIVADESVSALDVSIKAQVCNLLMDLQQSLnl 510
Cdd:PRK11147 423 --------YLQDF-LFHPKRAMTPvKALSGGERNRLLLAR-LFLKPsNLLILDEPTNDLDVETLELLEELLDSYQGTV-- 490
|
570
....*....|...
gi 636784243 511 afLFISHDMAVVE 523
Cdd:PRK11147 491 --LLVSHDRQFVD 501
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
31-252 |
3.19e-13 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 73.27 E-value: 3.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLakgsSRIDGAITLNGKDVLALPEKEMRRvrgnDAAMIFQEPM-- 108
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV----EVCGGEIRVNGREIGAYGLRELRR----QFSMIPQDPVlf 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 -----TSLNPiftigrqISEAltchgdiGKAE--ARAETVRLLEKVRIPNAA--SRFDEYPHQFSGGMRQRVMIAMALAS 179
Cdd:PTZ00243 1397 dgtvrQNVDP-------FLEA-------SSAEvwAALELVGLRERVASESEGidSRVLEGGSNYSVGQRQLMCMARALLK 1462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 180 RPKLLI-ADEPTT----ALDVTIQGQILDLIkmlqeeEGMSVLFITHDMGVVAEIaDRTIVMYRGEAVETGT-------T 247
Cdd:PTZ00243 1463 KGSGFIlMDEATAnidpALDRQIQATVMSAF------SAYTVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSprelvmnR 1535
|
....*
gi 636784243 248 DDIFH 252
Cdd:PTZ00243 1536 QSIFH 1540
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
335-517 |
3.30e-13 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 72.53 E-value: 3.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLvQPNG-GSVSL-DGYDVLsldavslrrmrrsiqmifqdpFASLNPR 412
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGL-WPYGsGRIARpAGARVL---------------------FLPQRPY 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 413 MTVG---AAVAEPITEHglgsgAQARDKAADLLERVGL-----KPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADE 484
Cdd:COG4178 437 LPLGtlrEALLYPATAE-----AFSDAELREALEAVGLghlaeRLDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDE 511
|
170 180 190
....*....|....*....|....*....|...
gi 636784243 485 SVSALDVSIKAQVCNLLmdLQQSLNLAFLFISH 517
Cdd:COG4178 512 ATSALDEENEAALYQLL--REELPGTTVISVGH 542
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
13-226 |
3.60e-13 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 68.54 E-value: 3.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaflVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVlalpeKE 91
Cdd:TIGR01189 1 LAARNLA----CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKT----TLLRILA-GLLRPDsGEVRWNGTPL-----AE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 MRRVRGNDAAMIFQEPmtSLNPIFTIgrqiSEALTCHGDIGKAEARAeTVRLLEKVripNAASRFDEYPHQFSGGMRQRV 171
Cdd:TIGR01189 67 QRDEPHENILYLGHLP--GLKPELSA----LENLHFWAAIHGGAQRT-IEDALAAV---GLTGFEDLPAAQLSAGQQRRL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVV 226
Cdd:TIGR01189 137 ALARLWLSRRPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
337-522 |
4.21e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 69.37 E-value: 4.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLD-----GY--DVLSLDAVSLRRMRRsiqmifqdpFASL 409
Cdd:PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNgklriGYvpQKLYLDTTLPLTVNR---------FLRL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPrmTVGAAVAEPitehglgsgAQARDKAADLLERvglkpDMMKrypheFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:PRK09544 93 RP--GTKKEDILP---------ALKRVQAGHLIDA-----PMQK-----LSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
|
170 180 190
....*....|....*....|....*....|...
gi 636784243 490 DVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVV 522
Cdd:PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDLHLV 184
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
299-546 |
4.98e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 71.62 E-value: 4.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 299 DTVDRRRTPILEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSL 378
Cdd:PRK15439 2 QTSDTTAPPLLCARSISKQY-----------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 379 DGYDVLSLDAVSLRRMrrSIQMIFQDP--FASLnprmtvgaAVAEPITeHGLGSGAQARDKAADLLERVG--LKPDMmkr 454
Cdd:PRK15439 71 GGNPCARLTPAKAHQL--GIYLVPQEPllFPNL--------SVKENIL-FGLPKRQASMQKMKQLLAALGcqLDLDS--- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 455 yphefSGG-----QRQRICIARALALDPKVIVADESVSALdvsIKAQVCNLLMDLQ--QSLNLAFLFISHDMAVVERVSH 527
Cdd:PRK15439 137 -----SAGslevaDRQIVEILRGLMRDSRILILDEPTASL---TPAETERLFSRIRelLAQGVGIVFISHKLPEIRQLAD 208
|
250
....*....|....*....
gi 636784243 528 RVAVMYLGEIVEIGPRAEL 546
Cdd:PRK15439 209 RISVMRDGTIALSGKTADL 227
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
12-228 |
5.03e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 68.29 E-value: 5.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTtaflVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKsvTSLsiMRLLAKGSSRIDGAITLNGKDVlalpeke 91
Cdd:PRK13538 1 MLEARNLA----CERDERILFSGLSFTLNAGELVQIEGPNGAGK--TSL--LRILAGLARPDAGEVLWQGEPI------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 92 mRRVRGndaamifqEPMTSLnpiFTIGRQ--ISEALTC----------HGDIGkaeaRAETVRLLEKVRIpnaaSRFDEY 159
Cdd:PRK13538 66 -RRQRD--------EYHQDL---LYLGHQpgIKTELTAlenlrfyqrlHGPGD----DEALWEALAQVGL----AGFEDV 125
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 160 P-HQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVtiQGqILDLIKMLQE--EEGMSVLFITH-DMGVVAE 228
Cdd:PRK13538 126 PvRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK--QG-VARLEALLAQhaEQGGMVILTTHqDLPVASD 195
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
334-529 |
8.32e-13 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 67.26 E-value: 8.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSL----------------DAVSLRRMRRs 397
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARVAYvpqrsevpdslpltvrDLVAMGRWAR- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 398 iqmifqdpfASLNPRMTvgaavaepitehglgsgAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDP 477
Cdd:NF040873 86 ---------RGLWRRLT-----------------RDDRAAVDDALERVGLA-DLAGRQLGELSGGQRQRALLAQGLAQEA 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 478 KVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRV 529
Cdd:NF040873 139 DLLLLDEPTTGLDAESRERIIALLAEEHAR-GATVVVVTHDLELVRRADPCV 189
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
29-236 |
1.10e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 67.68 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkgssridGAIT-LNGKDVLALPEKEMrrvrGNDAAMIfqep 107
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKS----TLLRLLA-------GALKgTPVAGCVDVPDNQF----GREASLI---- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 108 mtslnpiftigrqisEALTCHGDIGKAearaetVRLLEKVRIPNAAS---RFDEYphqfSGGMRQRVMIAMALASRPKLL 184
Cdd:COG2401 104 ---------------DAIGRKGDFKDA------VELLNAVGLSDAVLwlrRFKEL----STGQKFRFRLALLLAERPKLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 636784243 185 IADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVM 236
Cdd:COG2401 159 VIDEFCSHLDRQTAKRVARNLQKLARRAGITLVVATHHYDVIDDLQPDLLIF 210
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
164-531 |
1.13e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.58 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVtiqGQILDLIKMLQE--EEGMSVLFITHDMGVVAEIADRTIVMYrGE- 240
Cdd:COG1245 214 SGGELQRVAIAAALLRDADFYFFDEPSSYLDI---YQRLNVARLIRElaEEGKYVLVVEHDLAILDYLADYVHILY-GEp 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 241 ----------AVETGTtdDIFHRGrhpYTRAllsavprlGSMADRKWPLRFpvvdtttgERREPVEVADtvdrrRTPILE 310
Cdd:COG1245 290 gvygvvskpkSVRVGI--NQYLDG---YLPE--------ENVRIRDEPIEF--------EVHAPRREKE-----EETLVE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 311 VKNLVTRFDirGGLLGRKTGAIHavedvsfnlfQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDgydvlsldavs 390
Cdd:COG1245 344 YPDLTKSYG--GFSLEVEGGEIR----------EGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED----------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 391 lrrMRRSI--QMIFQDPFaslnprMTVGAAVAEPITEHGLGSGAQardkaADLLERVGLKPdMMKRYPHEFSGGQRQRIC 468
Cdd:COG1245 401 ---LKISYkpQYISPDYD------GTVEEFLRSANTDDFGSSYYK-----TEIIKPLGLEK-LLDKNVKDLSGGELQRVA 465
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 469 IARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAV 531
Cdd:COG1245 466 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
333-549 |
1.33e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 70.62 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 333 HAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLRRMrrsIQMIFQ--DPF-ASL 409
Cdd:PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA---ISVVSQrvHLFsATL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRMTVGAavaepitehglgsgAQARDKA-ADLLERVGLK-----PDMMKRYPHE----FSGGQRQRICIARALALDPKV 479
Cdd:PRK11160 431 RDNLLLAA--------------PNASDEAlIEVLQQVGLEklledDKGLNAWLGEggrqLSGGEQRRLGIARALLHDAPL 496
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 480 IVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVShRVAVMYLGEIVEIGPRAELFSN 549
Cdd:PRK11160 497 LLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQFD-RICVMDNGQIIEQGTHQELLAQ 563
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
25-259 |
1.42e-12 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 68.01 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 25 DGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLakgsSRIDGAITLNGKDVLALPEKEMRrvrgNDAAMIF 104
Cdd:cd03288 30 ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV----DIFDGKIVIDGIDISKLPLHTLR----SRLSIIL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 105 QEPMtslnpIF--TIGRQISEALTCHGDigkaearaetvRLLEKVRIPNAASRFDEYP-----------HQFSGGMRQRV 171
Cdd:cd03288 102 QDPI-----LFsgSIRFNLDPECKCTDD-----------RLWEALEIAQLKNMVKSLPggldavvteggENFSVGQRQLF 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 172 MIAMALASRPKLLIADEPTTALDVTIQgQILDLIKMLQEEEgMSVLFITHDMGVVAEiADRTIVMYRGEAVETGTTDDIF 251
Cdd:cd03288 166 CLARAFVRKSSILIMDEATASIDMATE-NILQKVVMTAFAD-RTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLL 242
|
....*...
gi 636784243 252 HRGRHPYT 259
Cdd:cd03288 243 AQEDGVFA 250
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
11-239 |
2.25e-12 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 66.11 E-value: 2.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVtslsIMRLLA--KGSSRIDGAITLNGKdvlaLP 88
Cdd:cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTT----LLDVLAgrKTAGVITGEILINGR----PL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKEMRRVRGndaamiFQEPMTSLNPIFTigrqISEALTCHgdigkAEARAETVRllekvripnaasrfdeyphqfsggMR 168
Cdd:cd03232 74 DKNFQRSTG------YVEQQDVHSPNLT----VREALRFS-----ALLRGLSVE------------------------QR 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHD-MGVVAEIADRTIVMYRG 239
Cdd:cd03232 115 KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQAILCTIHQpSASIFEKFDRLLLLKRG 185
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
306-541 |
5.35e-12 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 66.20 E-value: 5.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 306 TPILEVKNL---VTRFDIRGGL-LGRKTGAIHAVedvsfnlfqgetlslVGESGCGKSTTGRSITRlvQP----NGGSVS 377
Cdd:CHL00131 5 KPILEIKNLhasVNENEILKGLnLSINKGEIHAI---------------MGPNGSGKSTLSKVIAG--HPaykiLEGDIL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 378 LDGYDVLSLDAVSlrRMRRSIQMIFQDPF------------ASLNP-RMTVGAAVAEPITEHGLGSgaqardkaaDLLER 444
Cdd:CHL00131 68 FKGESILDLEPEE--RAHLGIFLAFQYPIeipgvsnadflrLAYNSkRKFQGLPELDPLEFLEIIN---------EKLKL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 445 VGLKPDMMKRYPHE-FSGGQRQRICIARALALDPKVIVADESVSALDVS---IKAQVCNLLMDLQQSLnlafLFISHDMA 520
Cdd:CHL00131 137 VGMDPSFLSRNVNEgFSGGEKKRNEILQMALLDSELAILDETDSGLDIDalkIIAEGINKLMTSENSI----ILITHYQR 212
|
250 260
....*....|....*....|..
gi 636784243 521 VVERVS-HRVAVMYLGEIVEIG 541
Cdd:CHL00131 213 LLDYIKpDYVHVMQNGKIIKTG 234
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
35-247 |
8.88e-12 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 65.80 E-value: 8.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 35 VSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSRIDGAITLNGKDV-----LAlpeKEMRRVRGNdAAMIFQE--- 106
Cdd:PRK09984 23 VDLNIHHGEMVALLGPSGSGKS-TLLRHLSGLITGDKSAGSHIELLGRTVqregrLA---RDIRKSRAN-TGYIFQQfnl 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 107 --PMTSLNPIFtIGRQISEAL--TCHGDIGKAEaRAETVRLLEKVRIPNAAsrfdeypHQ----FSGGMRQRVMIAMALA 178
Cdd:PRK09984 98 vnRLSVLENVL-IGALGSTPFwrTCFSWFTREQ-KQRALQALTRVGMVHFA-------HQrvstLSGGQQQRVAIARALM 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 179 SRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTT 247
Cdd:PRK09984 169 QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
11-246 |
1.49e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 67.73 E-value: 1.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFLVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAKGSSridGAITLNGKDVlalpEK 90
Cdd:TIGR01257 927 PGVCVKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKT-TTLSILTGLLPPTS---GTVLVGGKDI----ET 996
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVRGNDAamifqepMTSLNPIFTIGRQISEALTCHGDI-GKA--EARAETVRLLEKVRIPNaasRFDEYPHQFSGGM 167
Cdd:TIGR01257 997 NLDAVRQSLG-------MCPQHNILFHHLTVAEHILFYAQLkGRSweEAQLEMEAMLEDTGLHH---KRNEEAQDLSGGM 1066
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 168 RQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLikMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGT 246
Cdd:TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL--LLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-250 |
1.63e-11 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 67.18 E-value: 1.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 3 DVSSASASPV-LSVRNLTTaFLVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRIDGAITLNG 81
Cdd:PRK11174 339 EKELASNDPVtIEAEDLEI-LSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKT----SLLNALL-GFLPYQGSLKING 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 KDVLALPEKEMRRvrgnDAAMIFQEPM---TSLNPIFTIGR-QISEAltchgDIGKAEARA---ETVRLLEK---VRIPN 151
Cdd:PRK11174 411 IELRELDPESWRK----HLSWVGQNPQlphGTLRDNVLLGNpDASDE-----QLQQALENAwvsEFLPLLPQgldTPIGD 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 152 AASRFdeyphqfSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVAEIaD 231
Cdd:PRK11174 482 QAAGL-------SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN--AASRRQTTLMVTHQLEDLAQW-D 551
|
250
....*....|....*....
gi 636784243 232 RTIVMYRGEAVETGTTDDI 250
Cdd:PRK11174 552 QIWVMQDGQIVQQGDYAEL 570
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
30-246 |
2.08e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 67.46 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDVLALPEKEMRRVRGndaaMIFQEPMT 109
Cdd:PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER----GRILIDGCDISKFGLMDLRKVLG----IIPQAPVL 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 -------SLNPIftigrqiSEaltcHGDIGKAEAraetvrlLEKVRIPNAASR--------FDEYPHQFSGGMRQRVMIA 174
Cdd:PLN03130 1325 fsgtvrfNLDPF-------NE----HNDADLWES-------LERAHLKDVIRRnslgldaeVSEAGENFSVGQRQLLSLA 1386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 175 MALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGT 246
Cdd:PLN03130 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDT 1455
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
335-517 |
2.21e-11 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 62.56 E-value: 2.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSldgydvlsldavslrrMRRSIQMIF--QDPFaslnpr 412
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG----------------MPEGEDLLFlpQRPY------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 413 MTVGAavaepitehglgsgaqardkaadLLERVglkpdmmkRYP--HEFSGGQRQRICIARALALDPKVIVADESVSALD 490
Cdd:cd03223 75 LPLGT-----------------------LREQL--------IYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123
|
170 180
....*....|....*....|....*..
gi 636784243 491 VSIKAQVCNLLmdlqQSLNLAFLFISH 517
Cdd:cd03223 124 EESEDRLYQLL----KELGITVISVGH 146
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
335-548 |
2.38e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 67.28 E-value: 2.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvLSLDAVSLRRMRRSIQMIFQDP-FASLNPRM 413
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG---LNIAKIGLHDLRFKITIIPQDPvLFSGSLRM 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVgaavaEPITEHGLGSGAQARDkAADLLERVGLKPDMMKRYPHE----FSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:TIGR00957 1379 NL-----DPFSQYSDEEVWWALE-LAHLKTFVSALPDKLDHECAEggenLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 490 DVSIKaqvcNLlmdLQQSLNLAF-----LFISHDMAVVERVShRVAVMYLGEIVEIGPRAELFS 548
Cdd:TIGR00957 1453 DLETD----NL---IQSTIRTQFedctvLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQ 1508
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
34-252 |
2.41e-11 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 65.67 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDV---MPGETV-AIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNG-------KDVLALPEKemRRVrgndaA 101
Cdd:PRK11144 12 DLCLTVnltLPAQGItAIFGRSGAGKT----SLINAIS-GLTRPQkGRIVLNGrvlfdaeKGICLPPEK--RRI-----G 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 102 MIFQEpmTSLNPIFTIgrqisEALTCHGDIGKAEAR-AETVRLL--EKVripnaasrFDEYPHQFSGGMRQRVMIAMALA 178
Cdd:PRK11144 80 YVFQD--ARLFPHYKV-----RGNLRYGMAKSMVAQfDKIVALLgiEPL--------LDRYPGSLSGGEKQRVAIGRALL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 179 SRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFH 252
Cdd:PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
12-248 |
2.55e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 66.29 E-value: 2.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdgdwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSsridGAITLNGKDV------- 84
Cdd:PRK10982 250 ILEVRNLTSLR------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA----GTITLHGKKInnhnane 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 85 -----LALPEKEmRRVRGndaamIFQEPMTSLNPIFTigrQISEALTCHGDIGKAEARAETVRLLEKVRIPNAAsrfdey 159
Cdd:PRK10982 320 ainhgFALVTEE-RRSTG-----IYAYLDIGFNSLIS---NIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPG------ 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 160 pHQ-----FSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTI 234
Cdd:PRK10982 385 -HRtqigsLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSEMPELLGITDRIL 462
|
250
....*....|....*..
gi 636784243 235 VMYRGEA---VETGTTD 248
Cdd:PRK10982 463 VMSNGLVagiVDTKTTT 479
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
309-501 |
3.67e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 62.97 E-value: 3.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTrfdIRGGLLgrktgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslda 388
Cdd:PRK13539 3 LEGEDLAC---VRGGRV--------LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI----- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 vslrrmrrsiqmIFQDPFAS---------LNPRMTvgaaVAEPIT--EHGLGsgaQARDKAADLLERVGLKPDMMKRYpH 457
Cdd:PRK13539 67 ------------DDPDVAEAchylghrnaMKPALT----VAENLEfwAAFLG---GEELDIAAALEAVGLAPLAHLPF-G 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 636784243 458 EFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLL 501
Cdd:PRK13539 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
333-523 |
4.29e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 63.05 E-value: 4.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 333 HAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLV--QPNGGSVSLD----GYDVLSLDAVSlrrmrrsiqmifqdpf 406
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPdnqfGREASLIDAIG---------------- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 407 aslnPRMTVGAAVAepitehglgsgaqardkaadLLERVGL-KPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADES 485
Cdd:COG2401 108 ----RKGDFKDAVE--------------------LLNAVGLsDAVLWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEF 163
|
170 180 190
....*....|....*....|....*....|....*...
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVE 523
Cdd:COG2401 164 CSHLDRQTAKRVARNLQKLARRAGITLVVATHHYDVID 201
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
338-551 |
6.00e-11 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 65.96 E-value: 6.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 338 VSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDAVSLRRMRRSIQMIFQDP--FASlnprmTV 415
Cdd:PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREI---GAYGLRELRRQFSMIPQDPvlFDG-----TV 1400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 416 GAAVaEPITEhglgsGAQARDKAAdlLERVGLKpdmmKRYPHE--------------FSGGQRQRICIARA-LALDPKVI 480
Cdd:PTZ00243 1401 RQNV-DPFLE-----ASSAEVWAA--LELVGLR----ERVASEsegidsrvleggsnYSVGQRQLMCMARAlLKKGSGFI 1468
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 481 VADESVSALDVSIKAQVCNLLMDlqqslnlAF-----LFISHDMAVVERVShRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:PTZ00243 1469 LMDEATANIDPALDRQIQATVMS-------AFsaytvITIAHRLHTVAQYD-KIIVMDHGAVAEMGSPRELVMNRQ 1536
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
31-254 |
8.89e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 65.35 E-value: 8.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLL--AKGSSRIDGaitLNGKDVlalpekEMRRVRgndaamiFQEPM 108
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINesAEGEIIIDG---LNIAKI------GLHDLR-------FKITI 1364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 109 TSLNPIFtigrqISEALTCHGDIGKAEARAETVRLLEKVRIPNAASRF-DEYPHQ-------FSGGMRQRVMIAMALASR 180
Cdd:TIGR00957 1365 IPQDPVL-----FSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALpDKLDHEcaeggenLSVGQRQLVCLARALLRK 1439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 181 PKLLIADEPTTALDVTIQGQILDLIKMlqEEEGMSVLFITHDMGVVAEIAdRTIVMYRGEAVETGTTDDIF-HRG 254
Cdd:TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRT--QFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLqQRG 1511
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
309-492 |
1.03e-10 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 61.22 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRfdiRGGLLgrktgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlslDA 388
Cdd:TIGR01189 1 LAARNLACS---RGERM--------LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG------TP 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRMRRSIQMIFQDPFASLNPRMTVgaavAEPIT-EHGLGSGAQarDKAADLLERVGLKpDMMKRYPHEFSGGQRQRI 467
Cdd:TIGR01189 64 LAEQRDEPHENILYLGHLPGLKPELSA----LENLHfWAAIHGGAQ--RTIEDALAAVGLT-GFEDLPAAQLSAGQQRRL 136
|
170 180
....*....|....*....|....*
gi 636784243 468 CIARALALDPKVIVADESVSALDVS 492
Cdd:TIGR01189 137 ALARLWLSRRPLWILDEPTTALDKA 161
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
260-537 |
1.45e-10 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 64.65 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 260 RALLSAVPRLGSMADRKWPlrfPVVDTTTGERREPVEVadtvdrrrtPILEVKNLVTRFDIRGGllgrktgaiHAVEDVS 339
Cdd:TIGR01257 892 RALEKTEPLTEEMEDPEHP---EGINDSFFERELPGLV---------PGVCVKNLVKIFEPSGR---------PAVDRLN 950
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 340 FNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV-LSLDAVslrrmRRSIQMIFQDPFasLNPRMTvgaa 418
Cdd:TIGR01257 951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLDAV-----RQSLGMCPQHNI--LFHHLT---- 1019
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 419 VAEPITEHGLGSG---AQARDKAADLLERVGLKPDMMKRyPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKA 495
Cdd:TIGR01257 1020 VAEHILFYAQLKGrswEEAQLEMEAMLEDTGLHHKRNEE-AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 636784243 496 QVCNLLMDLQQSLNLafLFISHDMAVVERVSHRVAVMYLGEI 537
Cdd:TIGR01257 1099 SIWDLLLKYRSGRTI--IMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
13-226 |
1.52e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 60.97 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaflVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKdvlalPEKEM 92
Cdd:cd03231 1 LEADELT----CERDGRALFSGLSFTLAAGEALQVTGPNGSGKT----TLLRILAGLSPPLAGRVLLNGG-----PLDFQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGNDAAMIFQEP--MTSLNPIftigrqisEALTCHGDIGKAEARAETvrlLEKVRIpnaaSRFDEYP-HQFSGGMRQ 169
Cdd:cd03231 68 RDSIARGLLYLGHAPgiKTTLSVL--------ENLRFWHADHSDEQVEEA---LARVGL----NGFEDRPvAQLSAGQQR 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVV 226
Cdd:cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
330-549 |
1.70e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 61.43 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 330 GAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlsLDAVSLRRMRRSIQMIFQDpfASL 409
Cdd:PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI--TDWQTAKIMREAVAIVPEG--RRV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 NPRMTVGAAVAepitehgLGSGAQARDKAADLLERV-GLKPDMMKRYPHE---FSGGQRQRICIARALALDPKVIVADES 485
Cdd:PRK11614 92 FSRMTVEENLA-------MGGFFAERDQFQERIKWVyELFPRLHERRIQRagtMSGGEQQMLAIGRALMSQPRLLLLDEP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 636784243 486 VSALDVSIKAQVCNLLMDLQQSLNLAFLfISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSN 549
Cdd:PRK11614 165 SLGLAPIIIQQIFDTIEQLREQGMTIFL-VEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
348-556 |
2.10e-10 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 63.89 E-value: 2.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 348 LSLVGESGCGKSTTgrsitrlVQPNGGSVSLDGYDVLSLDavsLRRMRRSIQMIFQDPfaslnprMTVGAAVAEPIT--- 424
Cdd:PTZ00265 1258 FSLTKEGGSGEDST-------VFKNSGKILLDGVDICDYN---LKDLRNLFSIVSQEP-------MLFNMSIYENIKfgk 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 425 EHGLGSGAQARDKAADLLERVGLKPDMMKR----YPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNL 500
Cdd:PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTnvgpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 636784243 501 LMDLQQSLNLAFLFISHDMAVVERvSHRVAVM----YLGEIVEI-GPRAELFSNPQHAYTK 556
Cdd:PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKR-SDKIVVFnnpdRTGSFVQAhGTHEELLSVQDGVYKK 1460
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
30-235 |
2.37e-10 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 63.89 E-value: 2.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRL------------------------------------------LA 67
Cdd:PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFydlkndhhivfknehtndmtneqdyqgdeeqnvgmknvnefsLT 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 68 KGSSRID--------GAITLNGKDVLALPEKEMRrvrgNDAAMIFQEPMtslnpIFTIgrQISEALTchgdIGKAEARAE 139
Cdd:PTZ00265 1262 KEGGSGEdstvfknsGKILLDGVDICDYNLKDLR----NLFSIVSQEPM-----LFNM--SIYENIK----FGKEDATRE 1326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 140 TVRLLEKVR-----IPNAASRFDE----YPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQE 210
Cdd:PTZ00265 1327 DVKRACKFAaidefIESLPNKYDTnvgpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD 1406
|
250 260
....*....|....*....|....*
gi 636784243 211 EEGMSVLFITHDMGVVAEiADRTIV 235
Cdd:PTZ00265 1407 KADKTIITIAHRIASIKR-SDKIVV 1430
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
242-280 |
2.58e-10 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 56.26 E-value: 2.58e-10
10 20 30
....*....|....*....|....*....|....*....
gi 636784243 242 VETGTTDDIFHRGRHPYTRALLSAVPRLGSMADRKWPLR 280
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPKRPLYTIP 39
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
337-541 |
2.97e-10 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 60.75 E-value: 2.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNG---GSVSLDGydvlslDAVSLRRMRRSIQMIFQDPFasLNPRM 413
Cdd:cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNG------QPRKPDQFQKCVAYVRQDDI--LLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 TVGAAV--AEPITEHGLGSGAQARDKAADLLER-VGLKPDMMKRYPHeFSGGQRQRICIARALALDPKVIVADESVSALD 490
Cdd:cd03234 97 TVRETLtyTAILRLPRKSSDAIRKKRVEDVLLRdLALTRIGGNLVKG-ISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 636784243 491 VSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:cd03234 176 SFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
13-198 |
3.03e-10 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 61.41 E-value: 3.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGDwkPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLakgssRIDGAITLNGKDVLALPEKEM 92
Cdd:cd03289 3 MTVKDLTAKYTEGGN--AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-----NTEGDIQIDGVSWNSVPLQKW 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGNDAAMIFqepmtslnpIFT-IGRQISEALTCHGDigkaearAETVRLLEKVRIpnaASRFDEYPHQ--------- 162
Cdd:cd03289 76 RKAFGVIPQKVF---------IFSgTFRKNLDPYGKWSD-------EEIWKVAEEVGL---KSVIEQFPGQldfvlvdgg 136
|
170 180 190
....*....|....*....|....*....|....*....
gi 636784243 163 --FSGGMRQRVMIAMALASRPKLLIADEPTTALD-VTIQ 198
Cdd:cd03289 137 cvLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDpITYQ 175
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
538-574 |
3.07e-10 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 56.26 E-value: 3.07e-10
10 20 30
....*....|....*....|....*....|....*..
gi 636784243 538 VEIGPRAELFSNPQHAYTKKLMAAVPVPDPSRRGIKR 574
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPKRPLYT 37
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
329-510 |
4.96e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 59.65 E-value: 4.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 329 TGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLDAVSLR-RMRRSIQMIFQDPFA 407
Cdd:cd03290 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRsRNRYSVAYAAQKPWL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 408 sLNprmtvgAAVAEPITehgLGSG-AQARDKAadLLERVGLKPDMmKRYPH-----------EFSGGQRQRICIARALAL 475
Cdd:cd03290 91 -LN------ATVEENIT---FGSPfNKQRYKA--VTDACSLQPDI-DLLPFgdqteigergiNLSGGQRQRICVARALYQ 157
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 636784243 476 DPKVIVADESVSALDVSI-----KAQVCNLLMDLQQSLNL 510
Cdd:cd03290 158 NTNIVFLDDPFSALDIHLsdhlmQEGILKFLQDDKRTLVL 197
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
11-254 |
4.97e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 62.83 E-value: 4.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTAFLVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKsvTSLsIMRLLAKGSSRIDGAITLNGKdVLALPEK 90
Cdd:PLN03130 613 PAISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGK--TSL-ISAMLGELPPRSDASVVIRGT-VAYVPQV 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EM---RRVRGNdaaMIFQEPMTSL---NPIFTIGRQISEALTCHGDIGKAEARAetvrllekVRIpnaasrfdeyphqfS 164
Cdd:PLN03130 688 SWifnATVRDN---ILFGSPFDPEryeRAIDVTALQHDLDLLPGGDLTEIGERG--------VNI--------------S 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDliKMLQEE-EGMSVLFITHDMGVVAEIaDRTIVMYRGEAVE 243
Cdd:PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD--KCIKDElRGKTRVLVTNQLHFLSQV-DRIILVHEGMIKE 819
|
250
....*....|.
gi 636784243 244 TGTTDDIFHRG 254
Cdd:PLN03130 820 EGTYEELSNNG 830
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
334-550 |
8.10e-10 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 61.65 E-value: 8.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSldgYDVLSLDAVSLRRMRRSIQMIFQDPFA---SLN 410
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR---FHDIPLTKLQLDSWRSRLAVVSQTPFLfsdTVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 PRMTVG--AAVAEPITEhglgsGAQARDKAADLLE-------RVGLKPDMMkryphefSGGQRQRICIARALALDPKVIV 481
Cdd:PRK10789 407 NNIALGrpDATQQEIEH-----VARLASVHDDILRlpqgydtEVGERGVML-------SGGQKQRISIARALLLNAEILI 474
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 482 ADESVSALDVSIKAQVcnlLMDLQQSLNLAFLFIS-HDMAVVERVSHrVAVMYLGEIVEIGPRAELFSNP 550
Cdd:PRK10789 475 LDDALSAVDGRTEHQI---LHNLRQWGEGRTVIISaHRLSALTEASE-ILVMQHGHIAQRGNHDQLAQQS 540
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
334-548 |
8.36e-10 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 59.90 E-value: 8.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDV---LSLDAVSLRRMRRSIQMIFqdpfasln 410
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTrqaLQKNLVAYVPQSEEVDWSF-------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 PRMTVGAAVAEPITEHGLGSGAQARDKA--ADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSA 488
Cdd:PRK15056 94 PVLVEDVVMMGRYGHMGWLRRAKKRDRQivTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTG 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 489 LDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHrVAVMYLGEIVEIGPRAELFS 548
Cdd:PRK15056 173 VDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTFT 230
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
240-279 |
1.00e-09 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 55.45 E-value: 1.00e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 636784243 240 EAVETGTTDDIFHRGRHPYTRALLSAVPRLGsmaDRKWPL 279
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIK---KRDRKL 37
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
340-529 |
1.48e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 60.73 E-value: 1.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 340 FNLFQGETLSLVGESGCGKST------------TGR-------SITRLVQ--PN--GGSVsldgYDVLS--LDAVS--LR 392
Cdd:PRK11147 24 LHIEDNERVCLVGRNGAGKSTlmkilngevlldDGRiiyeqdlIVARLQQdpPRnvEGTV----YDFVAegIEEQAeyLK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 393 RMRRSIQMIFQDPFASLNPRMtvgAAVAEPITEHGlgsGAQARDKAADLLERVGLKPDMMKRyphEFSGGQRQRICIARA 472
Cdd:PRK11147 100 RYHDISHLVETDPSEKNLNEL---AKLQEQLDHHN---LWQLENRINEVLAQLGLDPDAALS---SLSGGWLRKAALGRA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 473 LALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLnlafLFISHDMAVVERVSHRV 529
Cdd:PRK11147 171 LVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSI----IFISHDRSFIRNMATRI 223
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
8-248 |
2.41e-09 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 58.50 E-value: 2.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 8 SASPVLSVRNLTTAflVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSlsimRLLA--KGSSRIDGAITLNGKDVL 85
Cdd:CHL00131 3 KNKPILEIKNLHAS--VNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLS----KVIAghPAYKILEGDILFKGESIL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 86 ALpEKEMRRVRGNDAAmiFQEP------------MTSLNpiftiGRQISEALTchgdigKAEARAETVRLLEKVRIPNAA 153
Cdd:CHL00131 75 DL-EPEERAHLGIFLA--FQYPieipgvsnadflRLAYN-----SKRKFQGLP------ELDPLEFLEIINEKLKLVGMD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 154 SRF-----DEyphQFSGGMRQRVMI-AMALaSRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGmSVLFITHDMGVVA 227
Cdd:CHL00131 141 PSFlsrnvNE---GFSGGEKKRNEIlQMAL-LDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITHYQRLLD 215
|
250 260
....*....|....*....|..
gi 636784243 228 EIA-DRTIVMYRGEAVETGTTD 248
Cdd:CHL00131 216 YIKpDYVHVMQNGKIIKTGDAE 237
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
41-240 |
3.13e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 3.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 41 PGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIdgaITLNGKDVLALPEKEMRRVrgndaamifqepmtslnpiftigrq 120
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV---IYIDGEDILEEVLDQLLLI------------------------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 121 isealtchgdigkaearaetvrllekvripnaasRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQ 200
Cdd:smart00382 53 ----------------------------------IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL 98
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 636784243 201 ILDLI-----KMLQEEEGMSVLFITHDMGVVAE-----IADRTIVMYRGE 240
Cdd:smart00382 99 LLLLEelrllLLLKSEKNLTVILTTNDEKDLGPallrrRFDRRIVLLLIL 148
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
11-221 |
3.70e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 56.81 E-value: 3.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 11 PVLSVRNLTTaflVDGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRI-DGAITLNGKDVlalpe 89
Cdd:PRK13539 1 MMLEGEDLAC---VRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKT----TLLRLIA-GLLPPaAGTIKLDGGDI----- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 kEMRRVRgndAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGKAEARAetvrlLEKVRIPNAASRfdeyPHQF-SGGMR 168
Cdd:PRK13539 67 -DDPDVA---EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAA-----LEAVGLAPLAHL----PFGYlSAGQK 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMsVLFITH 221
Cdd:PRK13539 134 RRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI-VIAATH 185
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
323-553 |
4.21e-09 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 59.29 E-value: 4.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 323 GLLGRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKST-----TGRSITRLVQpnGGSVSLDGYdvlsldAVSLRRMRRS 397
Cdd:TIGR00955 29 GCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTlmnalAFRSPKGVKG--SGSVLLNGM------PIDAKEMRAI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 398 IQMIFQDP--FASLNPR--MTVGAAVAEPitEHGLGSGAQARDKaaDLLERVGLK---------PDMMKryphEFSGGQR 464
Cdd:TIGR00955 101 SAYVQQDDlfIPTLTVRehLMFQAHLRMP--RRVTKKEKRERVD--EVLQALGLRkcantrigvPGRVK----GLSGGER 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 465 QRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPra 544
Cdd:TIGR00955 173 KRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGS-- 250
|
....*....
gi 636784243 545 elfsnPQHA 553
Cdd:TIGR00955 251 -----PDQA 254
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
337-506 |
5.69e-09 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 56.02 E-value: 5.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 337 DVSFNLFQGETLSLVGESGCGKST-----TGRSITRLVQpngGSVSLDGYDVlsldavSLRRMRRSIQMIFQDpfASLNP 411
Cdd:cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTllnalAGRRTGLGVS---GEVLINGRPL------DKRSFRKIIGYVPQD--DILHP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 RMTVgaavaepitehglgsgAQARDKAADLleRvGLkpdmmkryphefSGGQRQRICIARALALDPKVIVADESVSALDV 491
Cdd:cd03213 96 TLTV----------------RETLMFAAKL--R-GL------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144
|
170
....*....|....*
gi 636784243 492 SIKAQVCNLLMDLQQ 506
Cdd:cd03213 145 SSALQVMSLLRRLAD 159
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
338-550 |
6.20e-09 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 58.70 E-value: 6.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 338 VSFNLFQGETLSLVGESGCGKSTtgrsitrLVQ------PNGGSVSLDGYDVLSLDavsLRRMRRSIQMIFQDPfaSLnP 411
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTS-------LLNallgflPYQGSLKINGIELRELD---PESWRKHLSWVGQNP--QL-P 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 RMTVGAAVAepitehgLGSGAQARDKAADLLERVGLKpDMMKRYPH-----------EFSGGQRQRICIARALALDPKVI 480
Cdd:PRK11174 436 HGTLRDNVL-------LGNPDASDEQLQQALENAWVS-EFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQPCQLL 507
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 481 VADESVSALDVSIKAQVCNLLMdlQQSLNLAFLFISHDMAVVERVShRVAVMYLGEIVEIGPRAELFSNP 550
Cdd:PRK11174 508 LLDEPTASLDAHSEQLVMQALN--AASRRQTTLMVTHQLEDLAQWD-QIWVMQDGQIVQQGDYAELSQAG 574
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
31-248 |
1.04e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.50 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 31 VVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNgkDVLALPEKEMRRVRgNDAAMIFQEPMT- 109
Cdd:PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKS----TILKLIERLYDPTEGDIIIN--DSHNLKDINLKWWR-SKIGVVSQDPLLf 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 110 -------------SLNPIFTIGRQISE---------------ALTCHGDI----------GKAEAR--------AETVRL 143
Cdd:PTZ00265 473 snsiknnikyslySLKDLEALSNYYNEdgndsqenknkrnscRAKCAGDLndmsnttdsnELIEMRknyqtikdSEVVDV 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 144 LEKVRIPNAASRF-DEY-------PHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMS 215
Cdd:PTZ00265 553 SKKVLIHDFVSALpDKYetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRI 632
|
250 260 270
....*....|....*....|....*....|...
gi 636784243 216 VLFITHDMGVVaEIADRTIVMYRGEAVETGTTD 248
Cdd:PTZ00265 633 TIIIAHRLSTI-RYANTIFVLSNRERGSTVDVD 664
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-239 |
1.13e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 58.49 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 4 VSSASASPVLSVRNLTTAFlvDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTslsiMRLLAKGSSRIDGAITLNGKD 83
Cdd:TIGR01257 1929 ISGGNKTDILRLNELTKVY--SGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTT----FKMLTGDTTVTSGDATVAGKS 2002
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 84 VLAlpekEMRRVRGNdaaMIFQEPMTSLNPIFTiGRqisEALTCHgdigkAEARAETVRLLEKVRIPNAAS-----RFDE 158
Cdd:TIGR01257 2003 ILT----NISDVHQN---MGYCPQFDAIDDLLT-GR---EHLYLY-----ARLRGVPAEEIEKVANWSIQSlglslYADR 2066
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 159 YPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYR 238
Cdd:TIGR01257 2067 LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII-REGRAVVLTSHSMEECEALCTRLAIMVK 2145
|
.
gi 636784243 239 G 239
Cdd:TIGR01257 2146 G 2146
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
338-551 |
1.53e-08 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 55.71 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 338 VSFNLFQGETLSLVGESGCGKSTTGRSITRLVqPNGGSVSLDGYDVLSLDAVSLRRMRRSI-QmifQDPFASLNPrmtvg 416
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLsQ---QQTPPFAMP----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 417 aaVAEPITEHgLGSGAQARDKAA---DLLERVGLKpDMMKRYPHEFSGGQRQRICIA-------RALALDPKVIVADESV 486
Cdd:PRK03695 86 --VFQYLTLH-QPDKTRTEAVASalnEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAavvlqvwPDINPAGQLLLLDEPM 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 487 SALDVSIKAQVCNLLMDLQQsLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSNPQ 551
Cdd:PRK03695 162 NSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
13-253 |
1.58e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 58.03 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTtaFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKdVLALPEKEM 92
Cdd:TIGR00957 637 ITVHNAT--FTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKS----SLLSALLAEMDKVEGHVHMKGS-VAYVPQQAW 709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRvrgNDAamiFQEpmtslNPIFtiGRQISEAltchgdigKAEARAETVRLLEKVRIPNAASRFD--EYPHQFSGGMRQR 170
Cdd:TIGR00957 710 IQ---NDS---LRE-----NILF--GKALNEK--------YYQQVLEACALLPDLEILPSGDRTEigEKGVNLSGGQKQR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTIQGQILD-LIKMLQEEEGMSVLFITHDMGVVAEIaDRTIVMYRGEAVETGTTDD 249
Cdd:TIGR00957 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEhVIGPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQE 847
|
....
gi 636784243 250 IFHR 253
Cdd:TIGR00957 848 LLQR 851
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
21-248 |
1.87e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 57.41 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 21 AFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGkdvLALPEKEMRRVRGNdA 100
Cdd:PRK10789 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKS----TLLSLIQRHFDVSEGDIRFHD---IPLTKLQLDSWRSR-L 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 101 AMIFQEPM----TSLNPIfTIGR------QISEA--LTC-HGDIgkaearaetvrllekVRIPNA-ASRFDEYPHQFSGG 166
Cdd:PRK10789 392 AVVSQTPFlfsdTVANNI-ALGRpdatqqEIEHVarLASvHDDI---------------LRLPQGyDTEVGERGVMLSGG 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 167 MRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKmlQEEEGMSVLFITHDMGVVAEiADRTIVMYRGEAVETGT 246
Cdd:PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR--QWGEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGN 532
|
..
gi 636784243 247 TD 248
Cdd:PRK10789 533 HD 534
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
323-490 |
1.90e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 57.61 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 323 GLLGRKTGAIHAV-EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNgGSVSLDGydvLSLDAVSLRRMRRSIQMI 401
Cdd:TIGR01271 1222 GLTAKYTEAGRAVlQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDG---VSWNSVTLQTWRKAFGVI 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 402 FQDPFA-SLNPRMTvgaavaepitehgLGSGAQARDKAA-DLLERVGLKpDMMKRYPHE-----------FSGGQRQRIC 468
Cdd:TIGR01271 1298 PQKVFIfSGTFRKN-------------LDPYEQWSDEEIwKVAEEVGLK-SVIEQFPDKldfvlvdggyvLSNGHKQLMC 1363
|
170 180
....*....|....*....|..
gi 636784243 469 IARALALDPKVIVADESVSALD 490
Cdd:TIGR01271 1364 LARSILSKAKILLLDEPSAHLD 1385
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
12-245 |
2.09e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 55.57 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAflVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSimrLLAKGSSRI-DGAITLNGKDVLAL-PE 89
Cdd:PRK09580 1 MLSIKDLHVS--VED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSAT---LAGREDYEVtGGTVEFKGKDLLELsPE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 90 KEMrrvrGNDAAMIFQEPM------------TSLNPIFTIGRQisEALTCHGDIGKAEARAETVRLLEKV--RIPNAAsr 155
Cdd:PRK09580 74 DRA----GEGIFMAFQYPVeipgvsnqfflqTALNAVRSYRGQ--EPLDRFDFQDLMEEKIALLKMPEDLltRSVNVG-- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 156 fdeyphqFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEgMSVLFITHDMGVVAEIA-DRTI 234
Cdd:PRK09580 146 -------FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGK-RSFIIVTHYQRILDYIKpDYVH 217
|
250
....*....|.
gi 636784243 235 VMYRGEAVETG 245
Cdd:PRK09580 218 VLYQGRIVKSG 228
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
164-246 |
2.48e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.72 E-value: 2.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVmYRGEAVE 243
Cdd:COG1245 457 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV-FEGEPGV 535
|
...
gi 636784243 244 TGT 246
Cdd:COG1245 536 HGH 538
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
36-490 |
2.51e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 56.56 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 36 SFDVMPGETVAIVGESGSGKSVTS--LSIMRLLAKGS--SRIDGAITLNGKDVLALPEKEMRRvRGNDaamifqepMTSL 111
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALAraLAGELPLLSGErqSQFSHITRLSFEQLQKLVSDEWQR-NNTD--------MLSP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 112 NPIFTiGRQISEALTchgDIGKAEARAEtvRLLEKVRIPNAASRFDEYphqFSGGMRQRVMIAMALASRPKLLIADEPTT 191
Cdd:PRK10938 94 GEDDT-GRTTAEIIQ---DEVKDPARCE--QLAQQFGITALLDRRFKY---LSTGETRKTLLCQALMSEPDLLILDEPFD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 192 ALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFhrgrhpyTRALLSAVPRLGS 271
Cdd:PRK10938 165 GLDVASRQQLAELLASLH-QSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL-------QQALVAQLAHSEQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 272 MADrkwpLRFPVVDTTTGERREPVEvadtvdrrrTPILEVKNLVTRFDIRGGLlgrktgaihavEDVSFNLFQGETLSLV 351
Cdd:PRK10938 237 LEG----VQLPEPDEPSARHALPAN---------EPRIVLNNGVVSYNDRPIL-----------HNLSWQVNPGEHWQIV 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 352 GESGCGKSTTGRSITRlvqpnggsvslD---GYdvlSLDAVSLRRMRRSIQMIFQ--------------DPFASLNPRMT 414
Cdd:PRK10938 293 GPNGAGKSTLLSLITG-----------DhpqGY---SNDLTLFGRRRGSGETIWDikkhigyvssslhlDYRVSTSVRNV 358
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 415 VGAAVAEPITEHGLGSGAQaRDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALD 490
Cdd:PRK10938 359 ILSGFFDSIGIYQAVSDRQ-QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
339-536 |
2.90e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.72 E-value: 2.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNLF------QGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlSLDAVsLRRMRRSIqmiFQDPF------ 406
Cdd:COG1245 87 GFRLYglpvpkKGKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEP----SWDEV-LKRFRGTE---LQDYFkklang 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 407 ---ASLNPRM----------TVGAavaepitehgLGSGAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARAL 473
Cdd:COG1245 159 eikVAHKPQYvdlipkvfkgTVRE----------LLEKVDERGKLDELAEKLGLEN-ILDRDISELSGGELQRVAIAAAL 227
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 474 ALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYlGE 536
Cdd:COG1245 228 LRDADFYFFDEPSSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDLAILDYLADYVHILY-GE 288
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
309-490 |
2.99e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 55.25 E-value: 2.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdIRGGllgrktgaiHAV-EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNgGSVSLDGydvLSLD 387
Cdd:cd03289 3 MTVKDLTAKY-TEGG---------NAVlENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDG---VSWN 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 388 AVSLRRMRRSIQMIFQDPFASLNP-RMTVgaavaEPitehglgSGAQARDKAADLLERVGLKpDMMKRYPHE-------- 458
Cdd:cd03289 69 SVPLQKWRKAFGVIPQKVFIFSGTfRKNL-----DP-------YGKWSDEEIWKVAEEVGLK-SVIEQFPGQldfvlvdg 135
|
170 180 190
....*....|....*....|....*....|....*
gi 636784243 459 ---FSGGQRQRICIARALALDPKVIVADESVSALD 490
Cdd:cd03289 136 gcvLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
329-547 |
3.64e-08 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 56.26 E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 329 TGAIhAVEDVSF------NLFQGETLS--------LVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLdavSLRRM 394
Cdd:PRK10790 338 SGRI-DIDNVSFayrddnLVLQNINLSvpsrgfvaLVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL---SHSVL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 395 RRSIQMIFQDPF---ASLNPRMTVGAAVAEpitehglgsgaqarDKAADLLERVGLKpDMMKRYP-----------HEFS 460
Cdd:PRK10790 414 RQGVAMVQQDPVvlaDTFLANVTLGRDISE--------------EQVWQALETVQLA-ELARSLPdglytplgeqgNNLS 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 461 GGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLafLFISHDMA-VVErvSHRVAVMYLGEIVE 539
Cdd:PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL--VVIAHRLStIVE--ADTILVLHRGQAVE 554
|
....*...
gi 636784243 540 IGPRAELF 547
Cdd:PRK10790 555 QGTHQQLL 562
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
25-250 |
4.00e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 56.05 E-value: 4.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 25 DGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSI--MRLLAKGSSRIDGAITL-------NGKdvlalpekemrrv 95
Cdd:PRK13545 33 DGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIagVTMPNKGTVDIKGSAALiaissglNGQ------------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 96 rgndaamifqepMTSLNPIFTIGRQISealtchgdIGKAEARAETVRLLEKVRIpnaaSRFDEYP-HQFSGGMRQRVMIA 174
Cdd:PRK13545 100 ------------LTGIENIELKGLMMG--------LTKEKIKEIIPEIIEFADI----GKFIYQPvKTYSSGMKSRLGFA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 175 MALASRPKLLIADEPTTALDVTIQGQILDliKMLQ-EEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLD--KMNEfKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV 230
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
12-222 |
4.24e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 56.10 E-value: 4.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 12 VLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkGSSRID-GAITLNGKDVLALPEk 90
Cdd:TIGR03719 322 VIEAENLTKAF---GD-KLLIDDLSFKLPPGGIVGVIGPNGAGKS----TLFRMIT-GQEQPDsGTIEIGETVKLAYVD- 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRrvrgndaamifqepmTSLNPIFTIGRQISEALTcHGDIGKAEaraetvrllekvrIPNAA--SRFD-------EYPH 161
Cdd:TIGR03719 392 QSR---------------DALDPNKTVWEEISGGLD-IIKLGKRE-------------IPSRAyvGRFNfkgsdqqKKVG 442
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 162 QFSGGMRQRVMIAMALASRPKLLIADEPTTALDV-TIQGqildLIKMLQEEEGmSVLFITHD 222
Cdd:TIGR03719 443 QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVeTLRA----LEEALLNFAG-CAVVISHD 499
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
345-549 |
4.32e-08 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 54.53 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 345 GETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVLSLdavSLRRMRRSIQMIFQDPFA-------SLNPRMTVga 417
Cdd:cd03288 47 GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL---PLHTLRSRLSIILQDPILfsgsirfNLDPECKC-- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 418 avaepitehglgsgaqARDKAADLLERVGLKpDMMKRYP-----------HEFSGGQRQRICIARALALDPKVIVADESV 486
Cdd:cd03288 122 ----------------TDDRLWEALEIAQLK-NMVKSLPggldavvteggENFSVGQRQLFCLARAFVRKSSILIMDEAT 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 636784243 487 SALDVSIKaqvcNLlmdLQQSLNLAFLfishDMAVVErVSHRVAVMYLGEIVEIGPRAELFSN 549
Cdd:cd03288 185 ASIDMATE----NI---LQKVVMTAFA----DRTVVT-IAHRVSTILDADLVLVLSRGILVEC 235
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
41-518 |
4.58e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 55.95 E-value: 4.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 41 PGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEM---------------RRVRGNDAAMIFQ 105
Cdd:PRK10636 26 PGQKVGLVGKNGCGKS----TLLALLKNEISADGGSYTFPGNWQLAWVNQETpalpqpaleyvidgdREYRQLEAQLHDA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 106 EPMTSLNPIFTIgrqisealtcHGDIGKAEA---RAETVRLLEKVRIPNaaSRFDEYPHQFSGGMRQRVMIAMALASRPK 182
Cdd:PRK10636 102 NERNDGHAIATI----------HGKLDAIDAwtiRSRAASLLHGLGFSN--EQLERPVSDFSGGWRMRLNLAQALICRSD 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 183 LLIADEPTTALDVTiqgQILDLIKMLQEEEGMSVLfITHDMGVVAEIADRTIVMYRGEAVETGTTDDIFHRGRH---PYT 259
Cdd:PRK10636 170 LLLLDEPTNHLDLD---AVIWLEKWLKSYQGTLIL-ISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRAtrlAQQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 260 RALLSA----VPRLGSMADrkwplRFPVVDTTTG---------ERREPVEVADtVDRR-----RTPILEVKNLVTRFDIR 321
Cdd:PRK10636 246 QAMYESqqerVAHLQSYID-----RFRAKATKAKqaqsrikmlERMELIAPAH-VDNPfhfsfRAPESLPNPLLKMEKVS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 322 GGlLGRKTgaihAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLD-----GY------DVLSLDAVS 390
Cdd:PRK10636 320 AG-YGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAkgiklGYfaqhqlEFLRADESP 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 391 LRRMRRsiqmifqdpfaslnprmtvgaaVAEPITEHGLgsgaqardkaADLLERVGLKPDMMKRYPHEFSGGQRQRICIA 470
Cdd:PRK10636 395 LQHLAR----------------------LAPQELEQKL----------RDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 636784243 471 RALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLnlafLFISHD 518
Cdd:PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL----VVVSHD 486
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
536-571 |
4.69e-08 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 50.82 E-value: 4.69e-08
10 20 30
....*....|....*....|....*....|....*.
gi 636784243 536 EIVEIGPRAELFSNPQHAYTKKLMAAVPVPDPSRRG 571
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIKKRDRK 36
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
164-240 |
9.97e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 54.81 E-value: 9.97e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 164 SGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVmYRGE 240
Cdd:PRK13409 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV-FEGE 530
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
13-198 |
1.21e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 54.92 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFLVDGdwKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKgssriDGAITLNGKDVLALPEKEM 92
Cdd:TIGR01271 1218 MDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST-----EGEIQIDGVSWNSVTLQTW 1290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGndaaMIFQEpmtslnpIFTIGRQISEALTCHgdigKAEARAETVRLLEKVRIPNAASRF-DEYPHQ-------FS 164
Cdd:TIGR01271 1291 RKAFG----VIPQK-------VFIFSGTFRKNLDPY----EQWSDEEIWKVAEEVGLKSVIEQFpDKLDFVlvdggyvLS 1355
|
170 180 190
....*....|....*....|....*....|....*
gi 636784243 165 GGMRQRVMIAMALASRPKLLIADEPTTALD-VTIQ 198
Cdd:TIGR01271 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDpVTLQ 1390
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
336-529 |
1.34e-07 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 52.50 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 336 EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlsldaVSLRRMRRSIQMIFQdpFASLNPRMTV 415
Cdd:cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG--------GPLDFQRDSIARGLL--YLGHAPGIKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 416 GAAVAEPIT-EHGLGSgaqaRDKAADLLERVGLKpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIK 494
Cdd:cd03231 87 TLSVLENLRfWHADHS----DEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
170 180 190
....*....|....*....|....*....|....*
gi 636784243 495 AQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRV 529
Cdd:cd03231 162 ARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
18-239 |
2.12e-07 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 51.95 E-value: 2.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 18 LTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKgssrIDGAITLNGKDVLALPEKEMRRVRG 97
Cdd:cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT----LEGKVHWSNKNESEPSFEATRSRNR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 98 NDAAMIFQEPmtslnpiFTIGRQISEALTCHGDIGKAEARA--ETVRLLEKVRI-PNA-ASRFDEYPHQFSGGMRQRVMI 173
Cdd:cd03290 79 YSVAYAAQKP-------WLLNATVEENITFGSPFNKQRYKAvtDACSLQPDIDLlPFGdQTEIGERGINLSGGQRQRICV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 174 AMALASRPKLLIADEPTTALDVTIQGQILD--LIKMLQEEEgMSVLFITHDMGVVAEiADRTIVMYRG 239
Cdd:cd03290 152 ARALYQNTNIVFLDDPFSALDIHLSDHLMQegILKFLQDDK-RTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
307-549 |
2.60e-07 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 53.74 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 307 PILEVKNLVTRfdirggllgRKTGAIH-AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydVLS 385
Cdd:PRK13545 20 PFDKLKDLFFR---------SKDGEYHyALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--SAA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 386 LDAVSlrrmrrsiqmifqdpfASLNPRMTvgaaVAEPITEHGLGSGAQaRDKAADLLERVGLKPDMMKrYPHE----FSG 461
Cdd:PRK13545 89 LIAIS----------------SGLNGQLT----GIENIELKGLMMGLT-KEKIKEIIPEIIEFADIGK-FIYQpvktYSS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 462 GQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFlFISHDMAVVERVSHRVAVMYLGEIVEIG 541
Cdd:PRK13545 147 GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIF-FISHSLSQVKSFCTKALWLHYGQVKEYG 225
|
....*...
gi 636784243 542 PRAELFSN 549
Cdd:PRK13545 226 DIKEVVDH 233
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
339-533 |
3.64e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 51.60 E-value: 3.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNLFQ------GETLSLVGESGCGKSTTGRSITRLVQPN-GGSVSLDGYD-VLSLDAVS-----LRRMRR-SIQMIFQD 404
Cdd:cd03236 14 SFKLHRlpvpreGQVLGLVGPNGIGKSTALKILAGKLKPNlGKFDDPPDWDeILDEFRGSelqnyFTKLLEgDVKVIVKP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 405 PFASLNPRmTVGAAVAEPITEhglgsgAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALDPKVIVADE 484
Cdd:cd03236 94 QYVDLIPK-AVKGKVGELLKK------KDERGKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDADFYFFDE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 636784243 485 SVSALDVSIKAQVCNLLMDLQQSLNlAFLFISHDMAVVERVSHRVAVMY 533
Cdd:cd03236 166 PSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
345-541 |
4.72e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 51.33 E-value: 4.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 345 GETLSLVGESGCGKSTTGRSIT--RLVQPNGGSVSLDGYDVLSLDAVSlrRMRRSIQMIFQDP--FASLNPRMTVGAAVA 420
Cdd:PRK09580 27 GEVHAIMGPNGSGKSTLSATLAgrEDYEVTGGTVEFKGKDLLELSPED--RAGEGIFMAFQYPveIPGVSNQFFLQTALN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 421 EpiTEHGLGSGAQARDKAADLLER----VGLKPDMMKRYPHE-FSGGQRQRICIARALALDPKVIVADESVSALDVSIKA 495
Cdd:PRK09580 105 A--VRSYRGQEPLDRFDFQDLMEEkialLKMPEDLLTRSVNVgFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 636784243 496 QVCNLLMDLQQSlNLAFLFISHDMAVVERVS-HRVAVMYLGEIVEIG 541
Cdd:PRK09580 183 IVADGVNSLRDG-KRSFIIVTHYQRILDYIKpDYVHVLYQGRIVKSG 228
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
131-237 |
5.11e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 50.26 E-value: 5.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 131 IGKAEAraetVRLLEKVRIPNAASrfDEYPH----------QFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQ 200
Cdd:cd03222 36 TGKTTA----VKILAGQLIPNGDN--DEWDGitpvykpqyiDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLN 109
|
90 100 110
....*....|....*....|....*....|....*..
gi 636784243 201 ILDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVMY 237
Cdd:cd03222 110 AARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
13-240 |
5.14e-07 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 50.55 E-value: 5.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAF-LVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtSLsIMRLLakGS-SRIDGAITLNGKdvLALPEK 90
Cdd:cd03250 1 ISVEDASFTWdSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKS--SL-LSALL--GElEKLSGSVSVPGS--IAYVSQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 E---MRR-VRGNdaaMIFQEPM-----------TSLNP---IFTIGRQisealTCHGDIGkaearaetVRLlekvripna 152
Cdd:cd03250 74 EpwiQNGtIREN---ILFGKPFdeeryekvikaCALEPdleILPDGDL-----TEIGEKG--------INL--------- 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 153 asrfdeyphqfSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILD--LIKMLQeeEGMSVLFITHDMGVVAEiA 230
Cdd:cd03250 129 -----------SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLL--NNKTRILVTHQLQLLPH-A 194
|
250
....*....|
gi 636784243 231 DRTIVMYRGE 240
Cdd:cd03250 195 DQIVVLDNGR 204
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
335-531 |
5.25e-07 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 51.25 E-value: 5.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNlfQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDgydvlsLDAVSLRRmrrsiQMIFQDPfaslnpRMT 414
Cdd:cd03237 17 VEGGSIS--ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE------LDTVSYKP-----QYIKADY------EGT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 415 VGAAVAEPIteHGLGSGAQARDKAADLLERVGLkpdmMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIK 494
Cdd:cd03237 78 VRDLLSSIT--KDFYTHPYFKTEIAKPLQIEQI----LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 636784243 495 AQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVAV 531
Cdd:cd03237 152 LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
116-238 |
6.07e-07 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 49.67 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 116 TIGRQISEALTchgdigkAEARAETVRLLEKVRIPNAASRFDEYP--HQFSGGMRQRVMIAMALA-----SRPkLLIADE 188
Cdd:cd03227 36 TILDAIGLALG-------GAQSATRRRSGVKAGCIVAAVSAELIFtrLQLSGGEKELSALALILAlaslkPRP-LYILDE 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 636784243 189 PTTALDVTIQGQILDLIK-MLQeeEGMSVLFITHDMGvVAEIADRTIVMYR 238
Cdd:cd03227 108 IDRGLDPRDGQALAEAILeHLV--KGAQVIVITHLPE-LAELADKLIHIKK 155
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
42-246 |
6.49e-07 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 50.87 E-value: 6.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 42 GETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDVLALPEKEMrrvrgNDAAMIFQEPMTSLNPIFTIGRQI 121
Cdd:cd03237 25 SEVIGILGPNGIGKT----TFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK-----ADYEGTVRDLLSSITKDFYTHPYF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 122 sealtchgdigkaeaRAETVRLLEKVRIpnaasrFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQI 201
Cdd:cd03237 96 ---------------KTEIAKPLQIEQI------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 636784243 202 LDLIKMLQEEEGMSVLFITHDMGVVAEIADRTIVmYRGEAVETGT 246
Cdd:cd03237 155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV-FEGEPSVNGV 198
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
29-518 |
8.29e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 52.04 E-value: 8.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvTSLSIMRLLAK---GSSRIDGAIT---------LN-GKDVL-----ALPEK 90
Cdd:PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKS-TLLRIMAGVDKefeGEARPAPGIKvgylpqepqLDpEKTVRenveeGVAEV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 91 EMRRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTcHGDIGKAEARAEtvRLLEKVRIPNAasrfDEYPHQFSGGMRQR 170
Cdd:PRK11819 99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIID-AADAWDLDSQLE--IAMDALRCPPW----DAKVTKLSGGERRR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 171 VMIAMALASRPKLLIADEPTTALDVTiqgQILDLIKMLQEEEGmSVLFITHD---MGVVAE-IA--DR-TIVMYRGE--- 240
Cdd:PRK11819 172 VALCRLLLEKPDMLLLDEPTNHLDAE---SVAWLEQFLHDYPG-TVVAVTHDryfLDNVAGwILelDRgRGIPWEGNyss 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 241 ---------AVEtGTTDDIFHR--------------GRHPYTRALLSAVPRLGSMADRKWP----LRFPVvdtttGERre 293
Cdd:PRK11819 248 wleqkakrlAQE-EKQEAARQKalkrelewvrqspkARQAKSKARLARYEELLSEEYQKRNetneIFIPP-----GPR-- 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 294 pveVADTVdrrrtpiLEVKNLVTRFDIRggLLgrktgaihaVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNG 373
Cdd:PRK11819 320 ---LGDKV-------IEAENLSKSFGDR--LL---------IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 374 GSVsldgydvlsldavslrRMRRSIQMIFQDPF-ASLNPRMTVGAAVaepitehglgSGAQardkaaDLLE--------- 443
Cdd:PRK11819 379 GTI----------------KIGETVKLAYVDQSrDALDPNKTVWEEI----------SGGL------DIIKvgnreipsr 426
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 444 ----RVGLK-PDMMKRYpHEFSGGQRQRICIARALALDPKVIVADESVSALDVsikaqvcNLLMDLQQSLnLAF----LF 514
Cdd:PRK11819 427 ayvgRFNFKgGDQQKKV-GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV-------ETLRALEEAL-LEFpgcaVV 497
|
....
gi 636784243 515 ISHD 518
Cdd:PRK11819 498 ISHD 501
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
336-532 |
8.31e-07 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 48.60 E-value: 8.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 336 EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDgydvlsldavslrrmrrsiqmifqdpfaslnPRMTV 415
Cdd:cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG-------------------------------STVKI 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 416 GaavaepitehglgsgaqardkaadllervglkpdmmkrYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKA 495
Cdd:cd03221 66 G--------------------------------------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIE 107
|
170 180 190
....*....|....*....|....*....|....*..
gi 636784243 496 QVCNLLMDLQQslnlAFLFISHDMAVVERVSHRVAVM 532
Cdd:cd03221 108 ALEEALKEYPG----TVILVSHDRYFLDQVATKIIEL 140
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
34-250 |
1.95e-06 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 49.81 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 34 DVSFDVMPGETVAIVGESGSGKSVTSlsimRLLAKGSSRIDGAITLNGK-DVLALPekemrrvrgndaamifqepmTSLN 112
Cdd:PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLS----NIIGGSLSPTVGKVDRNGEvSVIAIS--------------------AGLS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 113 PIFTIGRQISEALTCHGdIGKAEARAETVRLLEkvripnaASRFDEYPHQ----FSGGMRQRVMIAMALASRPKLLIADE 188
Cdd:PRK13546 98 GQLTGIENIEFKMLCMG-FKRKEIKAMTPKIIE-------FSELGEFIYQpvkkYSSGMRAKLGFSINITVNPDILVIDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 189 PTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:PRK13546 170 ALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
345-527 |
1.96e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 50.94 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 345 GETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDG-------------YDVLSLDAV-----SLRRMRRSIQmifqdpf 406
Cdd:PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGnwqlawvnqetpaLPQPALEYVidgdrEYRQLEAQLH------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 407 aSLNPRMTvGAAVAepiTEHGLGSGAQA---RDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVAD 483
Cdd:PRK10636 100 -DANERND-GHAIA---TIHGKLDAIDAwtiRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 636784243 484 ESVSALDVSIKAQVCNLLMDLQQSLNLaflfISHDM----AVVERVSH 527
Cdd:PRK10636 175 EPTNHLDLDAVIWLEKWLKSYQGTLIL----ISHDRdfldPIVDKIIH 218
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
339-536 |
2.54e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 50.58 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNLF------QGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlSLDAVsLRRMRRSIqmiFQDPFASLN-- 410
Cdd:PRK13409 87 GFKLYglpipkEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEP----SWDEV-LKRFRGTE---LQNYFKKLYng 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 --------------PRMTVGAaVAEpitehgLGSGAQARDKAADLLERVGLKPdMMKRYPHEFSGGQRQRICIARALALD 476
Cdd:PRK13409 159 eikvvhkpqyvdliPKVFKGK-VRE------LLKKVDERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRD 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 477 PKVIVADESVSALDVSIKAQVCNLLMDLQQslNLAFLFISHDMAVVERVSHRVAVMYlGE 536
Cdd:PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAY-GE 287
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
162-237 |
2.57e-06 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 49.29 E-value: 2.57e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 162 QFSGGMRQRVMIAMALASRPKLLIADEPTTALDVtiqGQILDLIKMLQE--EEGMSVLFITHDMGVVAEIADRTIVMY 237
Cdd:cd03236 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDI---KQRLNAARLIRElaEDDNYVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
434-491 |
2.73e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 50.63 E-value: 2.73e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 434 ARDKAADLLERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDV 491
Cdd:PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
29-254 |
3.24e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 50.36 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKsvTSLsIMRLLAKGSSRIDGAITLNGKdVLALPEKEM---RRVRGNdaaMIFQ 105
Cdd:PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGK--TSL-ISAMLGELSHAETSSVVIRGS-VAYVPQVSWifnATVREN---ILFG 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 106 EPMTSLNpiftIGRQIS-EALTCHGDIGKAEARAEtvrllekvripnaasrFDEYPHQFSGGMRQRVMIAMALASRPKLL 184
Cdd:PLN03232 703 SDFESER----YWRAIDvTALQHDLDLLPGRDLTE----------------IGERGVNISGGQKQRVSMARAVYSNSDIY 762
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 185 IADEPTTALDVTIQGQILDLIkMLQEEEGMSVLFITHDMGVVAEIaDRTIVMYRGEAVETGTTDDIFHRG 254
Cdd:PLN03232 763 IFDDPLSALDAHVAHQVFDSC-MKDELKGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELSKSG 830
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
334-540 |
3.79e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 49.97 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 334 AVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDAVSLRRMRRSIQMIFQD--PFaslnp 411
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV---TAEQPEDYRKLFSAVFTDfhLF----- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 412 rmtvgaavaepitEHGLGSGAQARDKAA--DLLERVGLKpDMMKRYPHE-----FSGGQRQRICIARALALDPKVIVADE 484
Cdd:PRK10522 410 -------------DQLLGPEGKPANPALveKWLERLKMA-HKLELEDGRisnlkLSKGQKKRLALLLALAEERDILLLDE 475
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 485 SVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVERvSHRVAVMYLGEIVEI 540
Cdd:PRK10522 476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMRNGQLSEL 530
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
309-546 |
5.30e-06 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 48.96 E-value: 5.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 309 LEVKNLVTRFdirggllgrktGAIHAVEDVSFNLFQGETLSLVGESGCGKSTtGRSITRLVQPNGGSVSLDgYDVLSLDA 388
Cdd:NF000106 14 VEVRGLVKHF-----------GEVKAVDGVDLDVREGTVLGVLGP*GAA**R-GALPAHV*GPDAGRRPWR-F*TWCANR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 389 VSLRRM---RRSIQMIFQDPFASLNPRMTVGAAVAEpitehglgSGAQARDKAADLLERVGLKpDMMKRYPHEFSGGQRQ 465
Cdd:NF000106 81 RALRRTig*HRPVR*GRRESFSGRENLYMIGR*LDL--------SRKDARARADELLERFSLT-EAAGRAAAKYSGGMRR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 466 RICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAE 545
Cdd:NF000106 152 RLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDE 230
|
.
gi 636784243 546 L 546
Cdd:NF000106 231 L 231
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
335-517 |
5.63e-06 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 49.36 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 335 VEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDG----YDVLSLDAVSLRRMRRsiQMIFQDPFASLN 410
Cdd:TIGR00954 468 IESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAkgklFYVPQRPYMTLGTLRD--QIIYPDSSEDMK 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 411 PRmTVGAAVAEPITEHGlgsgaqardKAADLLER-VGLkpDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSAL 489
Cdd:TIGR00954 546 RR-GLSDKDLEQILDNV---------QLTHILEReGGW--SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613
|
170 180
....*....|....*....|....*...
gi 636784243 490 DVSIKAQVCNLLmdlqQSLNLAFLFISH 517
Cdd:TIGR00954 614 SVDVEGYMYRLC----REFGITLFSVSH 637
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
41-196 |
1.05e-05 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 48.72 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 41 PGETVAIVGESGSGKSvTSLSIMRLLAKGSSrIDGAITLNGKDVLALPEKEMRRVRGNDaaMIFQEPMTSLNPIFTIGRQ 120
Cdd:PLN03211 93 PGEILAVLGPSGSGKS-TLLNALAGRIQGNN-FTGTILANNRKPTKQILKRTGFVTQDD--ILYPHLTVRETLVFCSLLR 168
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 121 ISEALTCHGDIGKAEARAETVRLL--EKVRIPNAASRfdeyphQFSGGMRQRVMIAMALASRPKLLIADEPTTALDVT 196
Cdd:PLN03211 169 LPKSLTKQEKILVAESVISELGLTkcENTIIGNSFIR------GISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
338-547 |
1.21e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.79 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 338 VSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlsldAVSLRRMRRSIQMifqdpfASLNPRMTVGA 417
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------SVAYVPQQAWIQN------DSLRENILFGK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 418 AVAEPITehglgsgaQARDKAADLLERVGLKPDMMKRYPHE----FSGGQRQRICIARALALDPKVIVADESVSALDVSI 493
Cdd:TIGR00957 724 ALNEKYY--------QQVLEACALLPDLEILPSGDRTEIGEkgvnLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 636784243 494 KAQVCNLLMDLQQSL-NLAFLFISHDMAVVERVSHrVAVMYLGEIVEIGPRAELF 547
Cdd:TIGR00957 796 GKHIFEHVIGPEGVLkNKTRILVTHGISYLPQVDV-IIVMSGGKISEMGSYQELL 849
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
164-245 |
1.22e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 46.16 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 164 SGGMRQRVMIAMALASRPK--LLIADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFITHDMGVVAEiADRTIVM----- 236
Cdd:cd03238 89 SGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLI-DLGNTVILIEHNLDVLSS-ADWIIDFgpgsg 166
|
90
....*....|
gi 636784243 237 -YRGEAVETG 245
Cdd:cd03238 167 kSGGKVVFSG 176
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
336-532 |
1.50e-05 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 46.31 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 336 EDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGydvlSLDAVS----LrrMRRSIQ--MIFQDPFasl 409
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSqepwI--QNGTIRenILFGKPF--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 410 nprmtvgaavaepitehglgsgaqarDKaaDLLERV----GLKPDMmKRYPH-------E----FSGGQRQRICIARALA 474
Cdd:cd03250 93 --------------------------DE--ERYEKVikacALEPDL-EILPDgdlteigEkginLSGGQKQRISLARAVY 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 475 LDPKVIVADESVSALDvsikAQVCNLLMD--LQQSLNL--AFLFISHDMAVVERVSHrVAVM 532
Cdd:cd03250 144 SDADIYLLDDPLSAVD----AHVGRHIFEncILGLLLNnkTRILVTHQLQLLPHADQ-IVVL 200
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
326-549 |
1.56e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 46.73 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 326 GRKTGAIHAVEDVSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGyDVlSLDAVSlrrmrrsiqmifqdp 405
Cdd:PRK13546 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EV-SVIAIS--------------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 406 fASLNPRMTvgaaVAEPITEHGLGSGAQARDKAADLLERVGLKP--DMMKRYPHEFSGGQRQRICIARALALDPKVIVAD 483
Cdd:PRK13546 94 -AGLSGQLT----GIENIEFKMLCMGFKRKEIKAMTPKIIEFSElgEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 636784243 484 ESVSALDVSIkAQVCNLLMDLQQSLNLAFLFISHDMAVVERVSHRVA------VMYLGEIVEIGPRAELFSN 549
Cdd:PRK13546 169 EALSVGDQTF-AQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAwieggkLKDYGELDDVLPKYEAFLN 239
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
339-580 |
2.32e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 47.32 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 339 SFNLFQGETLSLVGESGCGKSTTGRSIT-RLVQPNGGSVSldgydvlsldavSLRRMRR----SIQMIFQDPFASLNPRM 413
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAgELPLLSGERQS------------QFSHITRlsfeQLQKLVSDEWQRNNTDM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 414 T------VGAAVAEPITEHglgsgAQARDKAADLLERVGLKPDMMKRYPHeFSGGQRQRICIARALALDPKVIVADESVS 487
Cdd:PRK10938 91 LspgeddTGRTTAEIIQDE-----VKDPARCEQLAQQFGITALLDRRFKY-LSTGETRKTLLCQALMSEPDLLILDEPFD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 488 ALDVSIKAQVCNLLMDLQQSlNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAELFSN---PQHAYTKKLmAAVPV 564
Cdd:PRK10938 165 GLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQalvAQLAHSEQL-EGVQL 242
|
250
....*....|....*.
gi 636784243 565 PDPSRRGIKRNLGTDE 580
Cdd:PRK10938 243 PEPDEPSARHALPANE 258
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
170-222 |
3.01e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 45.29 E-value: 3.01e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 636784243 170 RVMIAMALASRPKLLIADEPTTALDV-TIQGQILDLIKMLQEEEGMSVLFITHD 222
Cdd:cd03240 129 RLALAETFGSNCGILALDEPTTNLDEeNIEESLAEIIEERKSQKNFQLIVITHD 182
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
30-246 |
3.72e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 46.00 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 30 PVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRI--DGAITLNGKDVLALPE--KEmrrvrgndaamifq 105
Cdd:cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIkhSGRISFSSQFSWIMPGtiKE-------------- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 106 epmtslNPIFTIG------RQISEALTCHGDIGKAEARAETVrllekvripnaasrFDEYPHQFSGGMRQRVMIAMALAS 179
Cdd:cd03291 117 ------NIIFGVSydeyryKSVVKACQLEEDITKFPEKDNTV--------------LGEGGITLSGGQRARISLARAVYK 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 636784243 180 RPKLLIADEPTTALDVTIQGQILD--LIKMLQEEegmSVLFITHDMGVVaEIADRTIVMYRGEAVETGT 246
Cdd:cd03291 177 DADLYLLDSPFGYLDVFTEKEIFEscVCKLMANK---TRILVTSKMEHL-KKADKILILHEGSSYFYGT 241
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
148-250 |
6.41e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 46.27 E-value: 6.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 148 RIPNAASRFD--EYPHQFSG----GMRQRVMIAMALASRPKLLIADEPTTALDVTIQGQILDLIKMLQEEEGMSVlFI-T 220
Cdd:NF033858 377 RVAEMLERFDlaDVADALPDslplGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTI-FIsT 455
|
90 100 110
....*....|....*....|....*....|
gi 636784243 221 HDMGvVAEIADRTIVMYRGEAVETGTTDDI 250
Cdd:NF033858 456 HFMN-EAERCDRISLMHAGRVLASDTPAAL 484
|
|
| PRK |
cd02026 |
Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or ... |
348-430 |
7.97e-05 |
|
Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Pssm-ID: 238984 [Multi-domain] Cd Length: 273 Bit Score: 44.64 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 348 LSLVGESGCGKSTTGRSITRLVQPNGGSV-SLDGYdvLSLDavslRRMRRSIQMIFQDPFASLNPRMT-------VGAAV 419
Cdd:cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTViCLDDY--HSLD----RKGRKETGITALDPRANNFDLMYeqlkalkEGQAI 75
|
90
....*....|.
gi 636784243 420 AEPITEHGLGS 430
Cdd:cd02026 76 EKPIYNHVTGL 86
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
344-531 |
1.29e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 344 QGETLSLVGESGCGKSTTGRSITRLVQPNGGsvsldgyDVLSLDAVSLRRMrrsiqmifqdpfaslnprmtvgaavaepi 423
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGG-------GVIYIDGEDILEE----------------------------- 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 424 tehglgsgaqardkaadllERVGLKPDMMKRYPHEFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQV-----C 498
Cdd:smart00382 45 -------------------VLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLllleeL 105
|
170 180 190
....*....|....*....|....*....|....*....
gi 636784243 499 NLLMDLQQSLNLAFLFISH------DMAVVERVSHRVAV 531
Cdd:smart00382 106 RLLLLLKSEKNLTVILTTNdekdlgPALLRRRFDRRIVL 144
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
164-234 |
1.59e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.82 E-value: 1.59e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 164 SGGMRQRVMIAMALAS---RPKLLIADEPTTALDVTiqgQILDLIKMLQE--EEGMSVLFITHDMGVVaEIADRTI 234
Cdd:PRK00635 811 SGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTH---DIKALIYVLQSltHQGHTVVIIEHNMHVV-KVADYVL 882
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
25-248 |
1.70e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 44.71 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 25 DGDWKPVVRDVSFDVMPGETVAIVGESGSGKSVTSLSIMRLLAKGSSRIDGAITLNGKDvlalPEKEMRRVRGNdaaMIF 104
Cdd:TIGR00956 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGIT----PEEIKKHYRGD---VVY 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 105 QEPMTSLNPIFTIGRQISEALTCHG-----DIGKAEARAETVRLLekvripnAASRF-----------DEYPHQFSGGMR 168
Cdd:TIGR00956 143 NAETDVHFPHLTVGETLDFAARCKTpqnrpDGVSREEYAKHIADV-------YMATYglshtrntkvgNDFVRGVSGGER 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDVTIQgqiLDLIKMLQEEEGmsvlfITHDMGVVA---------EIADRTIVMYRG 239
Cdd:TIGR00956 216 KRVSIAEASLGGAKIQCWDNATRGLDSATA---LEFIRALKTSAN-----ILDTTPLVAiyqcsqdayELFDKVIVLYEG 287
|
....*....
gi 636784243 240 EAVETGTTD 248
Cdd:TIGR00956 288 YQIYFGPAD 296
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
460-559 |
3.55e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 43.81 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 460 SGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLM--DLQQSLNLAFLFISHDMAVVErvshRVAVMYLGEI 537
Cdd:PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMkdELKGKTRVLVTNQLHFLPLMD----RIILVSEGMI 817
|
90 100
....*....|....*....|..
gi 636784243 538 VEIGPRAELFSNPQhaYTKKLM 559
Cdd:PLN03232 818 KEEGTFAELSKSGS--LFKKLM 837
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
164-234 |
3.95e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 42.60 E-value: 3.95e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 636784243 164 SGGMRQRVMIAMALASR---PKLLIADEPTTALDVtiqGQILDLIKMLQE--EEGMSVLFITHDMGVVAeIADRTI 234
Cdd:cd03271 171 SGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHF---HDVKKLLEVLQRlvDKGNTVVVIEHNLDVIK-CADWII 242
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
338-484 |
4.15e-04 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 43.25 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 338 VSFNLFQGETLSLVGESGCGKSTTGRSITRLVQPNGGSVSLDGYDVlslDAVSLRRMRRSIQMIFQDPFaslnprmtvga 417
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPV---TADNREAYRQLFSAVFSDFH----------- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 418 avaepITEHGLGS-GAQARDKAADLLERVGLKpdmmkrypH------------EFSGGQRQRICIARALALDPKVIVADE 484
Cdd:COG4615 417 -----LFDRLLGLdGEADPARARELLERLELD--------HkvsvedgrfsttDLSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
10-222 |
7.11e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.46 E-value: 7.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 10 SPVLSVRNLTTAFlvdGDwKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITL-NGKDVLALP 88
Cdd:PRK10636 310 NPLLKMEKVSAGY---GD-RIILDSIKLNLVPGSRIGLLGRNGAGKS----TLIKLLAGELAPVSGEIGLaKGIKLGYFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 89 EKEMRRVRGNDAAMifqEPMTSLNPIFTiGRQISEALTCHGDIGkaearaetvrllEKVRIPNAasrfdeyphQFSGGMR 168
Cdd:PRK10636 382 QHQLEFLRADESPL---QHLARLAPQEL-EQKLRDYLGGFGFQG------------DKVTEETR---------RFSGGEK 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 636784243 169 QRVMIAMALASRPKLLIADEPTTALDvtiqgqiLDLIKMLQEE----EGMSVLfITHD 222
Cdd:PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLD-------LDMRQALTEAlidfEGALVV-VSHD 486
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
444-533 |
7.66e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 40.63 E-value: 7.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 444 RVGLKPDMMKrypheFSGGQRQRICIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQQSLNLAFLFISHDMAVVE 523
Cdd:cd03222 62 TPVYKPQYID-----LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136
|
90
....*....|
gi 636784243 524 RVSHRVAVMY 533
Cdd:cd03222 137 YLSDRIHVFE 146
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
460-497 |
9.33e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 42.42 E-value: 9.33e-04
10 20 30
....*....|....*....|....*....|....*...
gi 636784243 460 SGGQRQRICIARALALDPKVIVADESVSALDVSIKAQV 497
Cdd:PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
164-234 |
9.92e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 42.31 E-value: 9.92e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 636784243 164 SGGMRQRVMIAMALASR---PKLLIADEPTTAL---DVTiqgQILDLIKMLQeEEGMSVLFITHDMGVVaEIADRTI 234
Cdd:TIGR00630 831 SGGEAQRIKLAKELSKRstgRTLYILDEPTTGLhfdDIK---KLLEVLQRLV-DKGNTVVVIEHNLDVI-KTADYII 902
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
2-239 |
1.56e-03 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 41.63 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 2 SDVSSASASPVLSVRNLTTAFLVDGDWKPVVRDVSFDVMPGETVAIVGESGSGKsvTSLsiMRLLAKgssRIDGAITLNG 81
Cdd:TIGR00956 749 KDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGK--TTL--LNVLAE---RVTTGVITGG 821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 82 kDVL----ALPEKEMRR---VRGNDaamIFQEPMT---SLnpiftigrQISEALTCHGDIGKAEARA---ETVRLLEkvr 148
Cdd:TIGR00956 822 -DRLvngrPLDSSFQRSigyVQQQD---LHLPTSTvreSL--------RFSAYLRQPKSVSKSEKMEyveEVIKLLE--- 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 149 ipnaasrFDEYPHQFSG----GM----RQRVMIAMALASRPKLLI-ADEPTTALDVTIQGQILDLIKMLQeEEGMSVLFI 219
Cdd:TIGR00956 887 -------MESYADAVVGvpgeGLnveqRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKLA-DHGQAILCT 958
|
250 260
....*....|....*....|.
gi 636784243 220 THD-MGVVAEIADRTIVMYRG 239
Cdd:TIGR00956 959 IHQpSAILFEEFDRLLLLQKG 979
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
29-221 |
1.71e-03 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 39.93 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 29 KPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAKGSSRIDGAITLNGKDV---LALPEKEMrrvrgndaamIFQ 105
Cdd:PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKT----TLLKLIAGLLNPEKGEILFERQSIkkdLCTYQKQL----------CFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 106 EPMTSLNPIFTIgRQisealTCHGDIGKAEARAETVRLlekVRIPNAASRFDeYP-HQFSGGMRQRVMIAMALASRPKLL 184
Cdd:PRK13540 80 GHRSGINPYLTL-RE-----NCLYDIHFSPGAVGITEL---CRLFSLEHLID-YPcGLLSSGQKRQVALLRLWMSKAKLW 149
|
170 180 190
....*....|....*....|....*....|....*....
gi 636784243 185 IADEPTTALDvtiQGQILDLIKMLQE--EEGMSVLFITH 221
Cdd:PRK13540 150 LLDEPLVALD---ELSLLTIITKIQEhrAKGGAVLLTSH 185
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
162-195 |
1.92e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.38 E-value: 1.92e-03
10 20 30
....*....|....*....|....*....|....
gi 636784243 162 QFSGGMRQRVMIAMALASRPKLLIADEPTTALDV 195
Cdd:PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
13-249 |
2.53e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 40.65 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 13 LSVRNLTTAFlvdgDWKPVVRDVSFDVMPGETVAIVGESGSGKSvtslSIMRLLAkgssridGAITLNGKDVlALPEKEM 92
Cdd:PRK15064 320 LEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKT----TLLRTLV-------GELEPDSGTV-KWSENAN 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 93 RRVRGNDAAMIFQEPMTSLNPIFTIGRQISEALTCHGDIGkaearaetvRLL-------EKVRIpnaasrfdeyphqFSG 165
Cdd:PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG---------RLLfsqddikKSVKV-------------LSG 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 166 GMRQRVMIAMALASRPKLLIADEPTTALDVTiqgQILDLIKMLQEEEGmSVLFITHDMGVVAEIADRTIVMYRGEAVE-T 244
Cdd:PRK15064 442 GEKGRMLFGKLMMQKPNVLVMDEPTNHMDME---SIESLNMALEKYEG-TLIFVSHDREFVSSLATRIIEITPDGVVDfS 517
|
....*
gi 636784243 245 GTTDD 249
Cdd:PRK15064 518 GTYEE 522
|
|
| PRK07429 |
PRK07429 |
phosphoribulokinase; Provisional |
348-430 |
2.89e-03 |
|
phosphoribulokinase; Provisional
Pssm-ID: 180975 Cd Length: 327 Bit Score: 39.99 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 348 LSLVGESGCGKSTTGRSITRLVQP-NGGSVSLDGYDvlSLDavslRRMRRSIqmifqdPFASLNPR-------------M 413
Cdd:PRK07429 11 LGVAGDSGCGKTTFLRGLADLLGEeLVTVICTDDYH--SYD----RKQRKEL------GITALDPRannldimyehlkaL 78
|
90
....*....|....*..
gi 636784243 414 TVGAAVAEPITEHGLGS 430
Cdd:PRK07429 79 KTGQPILKPIYNHETGT 95
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
134-222 |
7.07e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 39.49 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 636784243 134 AEARAEtvRLLEKVRIPNaasrfdeypHQFSGGMRQ-------RVMIAMALASRPKLLIADEPTTALDVtiqgqilDLIK 206
Cdd:PRK15064 131 AEARAG--ELLLGVGIPE---------EQHYGLMSEvapgwklRVLLAQALFSNPDILLLDEPTNNLDI-------NTIR 192
|
90
....*....|....*....
gi 636784243 207 MLQE---EEGMSVLFITHD 222
Cdd:PRK15064 193 WLEDvlnERNSTMIIISHD 211
|
|
| |
