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Conserved domains on  [gi|635626335|ref|WP_024273305|]
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phage replisome organizer N-terminal domain-containing protein [Staphylococcus aureus]

Protein Classification

phage replisome organizer N-terminal domain-containing protein( domain architecture ID 10560445)

phage replisome organizer N-terminal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_rep_org_N pfam09681
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ...
 6-125 1.16e-59

N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region.


:

Pssm-ID: 430749  Cd Length: 121  Bit Score: 185.28  E-value: 1.16e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635626335    6 WIKLKVGMFDDSKIKYIEALPERDTIITIWVKLLTLSGKYNEQGYIMLSENLPYNEEMLANEFSRPINSIRLAIQTFETL 85
Cdd:pfam09681   1 WIKLKVNMFDDEKIKLIEKMPEGDTYIVIWLKLLLLSGKTNNNGYIMLSENIPYTAEMLATIFNRPLNTVRLALQTFKQF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 635626335   86 GMIEKV-NGVIKVTNWEKHQNIEGLEKIREQNRLRKQKQRE 125
Cdd:pfam09681  81 GMIEISdNGAIKITNWSKHQNLESLEKHRERTRRRKQKHRE 121
 
Name Accession Description Interval E-value
Phage_rep_org_N pfam09681
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ...
 6-125 1.16e-59

N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region.


Pssm-ID: 430749  Cd Length: 121  Bit Score: 185.28  E-value: 1.16e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635626335    6 WIKLKVGMFDDSKIKYIEALPERDTIITIWVKLLTLSGKYNEQGYIMLSENLPYNEEMLANEFSRPINSIRLAIQTFETL 85
Cdd:pfam09681   1 WIKLKVNMFDDEKIKLIEKMPEGDTYIVIWLKLLLLSGKTNNNGYIMLSENIPYTAEMLATIFNRPLNTVRLALQTFKQF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 635626335   86 GMIEKV-NGVIKVTNWEKHQNIEGLEKIREQNRLRKQKQRE 125
Cdd:pfam09681  81 GMIEISdNGAIKITNWSKHQNLESLEKHRERTRRRKQKHRE 121
phage_rep_org_N TIGR01714
phage replisome organizer, putative, N-terminal region; This model represents the N-terminal ...
 6-125 3.74e-49

phage replisome organizer, putative, N-terminal region; This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130775  Cd Length: 119  Bit Score: 158.42  E-value: 3.74e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635626335    6 WIKLKVGMFDDSKIKYIEALPERDTIITIWVKLLTLSgkYNEQGYIMLSENLPYNEEMLANEFSRPINSIRLAIQTFETL 85
Cdd:TIGR01714   1 WIKLKVNFFDSKEIKLLEKMPEGDTHTIIWLKLLLLS--LNDGGCIYLNELAPYNAEMLATMFNRNVGDIRITLQTLESL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 635626335   86 GMIEKVN-GVIKVTNWEKHQNIEGLEKIREQNRLRKQKQRE 125
Cdd:TIGR01714  79 GLIEKKNnGDIFLENWEKHVGSDSASARRERKFRRNQKALE 119
 
Name Accession Description Interval E-value
Phage_rep_org_N pfam09681
N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal ...
 6-125 1.16e-59

N-terminal phage replisome organizer (Phage_rep_org_N); This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region.


Pssm-ID: 430749  Cd Length: 121  Bit Score: 185.28  E-value: 1.16e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635626335    6 WIKLKVGMFDDSKIKYIEALPERDTIITIWVKLLTLSGKYNEQGYIMLSENLPYNEEMLANEFSRPINSIRLAIQTFETL 85
Cdd:pfam09681   1 WIKLKVNMFDDEKIKLIEKMPEGDTYIVIWLKLLLLSGKTNNNGYIMLSENIPYTAEMLATIFNRPLNTVRLALQTFKQF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 635626335   86 GMIEKV-NGVIKVTNWEKHQNIEGLEKIREQNRLRKQKQRE 125
Cdd:pfam09681  81 GMIEISdNGAIKITNWSKHQNLESLEKHRERTRRRKQKHRE 121
phage_rep_org_N TIGR01714
phage replisome organizer, putative, N-terminal region; This model represents the N-terminal ...
 6-125 3.74e-49

phage replisome organizer, putative, N-terminal region; This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130775  Cd Length: 119  Bit Score: 158.42  E-value: 3.74e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635626335    6 WIKLKVGMFDDSKIKYIEALPERDTIITIWVKLLTLSgkYNEQGYIMLSENLPYNEEMLANEFSRPINSIRLAIQTFETL 85
Cdd:TIGR01714   1 WIKLKVNFFDSKEIKLLEKMPEGDTHTIIWLKLLLLS--LNDGGCIYLNELAPYNAEMLATMFNRNVGDIRITLQTLESL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 635626335   86 GMIEKVN-GVIKVTNWEKHQNIEGLEKIREQNRLRKQKQRE 125
Cdd:TIGR01714  79 GLIEKKNnGDIFLENWEKHVGSDSASARRERKFRRNQKALE 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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