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Conserved domains on  [gi|585361522|ref|WP_024243115|]
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recombination protein NinG, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NinG super family cl24180
Bacteriophage Lambda NinG protein; NinG or Rap is involved in recombination. Rap ...
 1-74 9.21e-33

Bacteriophage Lambda NinG protein; NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.


The actual alignment was detected with superfamily member pfam05766:

Pssm-ID: 428621  Cd Length: 195  Bit Score: 111.50  E-value: 9.21e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 585361522    1 PQLRFDERNIHKQCVVCNQHKSGNLVPYRVELISRIGQEAVEEIESNHNRYRWTVEECRAIKAEYQQKLKKLRN 74
Cdd:pfam05766 121 PELRFNEDNIHKQCVVCNVHLSGNIEAYRVNLVEKIGVERVEFLEGPHTPHKWTIEELKAIIAEYKAKLKALKK 194
 
Name Accession Description Interval E-value
NinG pfam05766
Bacteriophage Lambda NinG protein; NinG or Rap is involved in recombination. Rap ...
 1-74 9.21e-33

Bacteriophage Lambda NinG protein; NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.


Pssm-ID: 428621  Cd Length: 195  Bit Score: 111.50  E-value: 9.21e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 585361522    1 PQLRFDERNIHKQCVVCNQHKSGNLVPYRVELISRIGQEAVEEIESNHNRYRWTVEECRAIKAEYQQKLKKLRN 74
Cdd:pfam05766 121 PELRFNEDNIHKQCVVCNVHLSGNIEAYRVNLVEKIGVERVEFLEGPHTPHKWTIEELKAIIAEYKAKLKALKK 194
 
Name Accession Description Interval E-value
NinG pfam05766
Bacteriophage Lambda NinG protein; NinG or Rap is involved in recombination. Rap ...
 1-74 9.21e-33

Bacteriophage Lambda NinG protein; NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.


Pssm-ID: 428621  Cd Length: 195  Bit Score: 111.50  E-value: 9.21e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 585361522    1 PQLRFDERNIHKQCVVCNQHKSGNLVPYRVELISRIGQEAVEEIESNHNRYRWTVEECRAIKAEYQQKLKKLRN 74
Cdd:pfam05766 121 PELRFNEDNIHKQCVVCNVHLSGNIEAYRVNLVEKIGVERVEFLEGPHTPHKWTIEELKAIIAEYKAKLKALKK 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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