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Conserved domains on  [gi|558474997|ref|WP_023484205|]
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spore germination protein GerPE [Paenibacillus larvae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GerPE super family cl46707
Spore germination protein GerPE; GerPE is required for the formation of functionally normal ...
 4-124 5.60e-28

Spore germination protein GerPE; GerPE is required for the formation of functionally normal spores. It could be involved in the establishment of a normal spore coat structure and (or) permeability, which allows the access of germinants to their receptor.


The actual alignment was detected with superfamily member pfam10970:

Pssm-ID: 481047  Cd Length: 123  Bit Score: 99.84  E-value: 5.60e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558474997    4 ISCVTNILINNIDNSSTFICGDTGRIGAKSNVFALHREVPVFIEDEGNFSDYKVFSKKIPTIPLDENLEQEVLNLSPRIK 83
Cdd:pfam10970   1 TSVVQFVKVNSLGISSVLQVGDTEEIELKSRALAVQRQLSLFYGNEGRLDDFEIFTEPIPLPLPETPVQSAFVHEKPFIK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 558474997   84 VGQIKVNSISTSASFQVGSNHRMDLESRIVNIRQFVDAPPS 124
Cdd:pfam10970  81 VRSIKIRGVSSSSVFHIGSTSYVNAESRVKHIRQLISDEPL 121
 
Name Accession Description Interval E-value
GerPE pfam10970
Spore germination protein GerPE; GerPE is required for the formation of functionally normal ...
 4-124 5.60e-28

Spore germination protein GerPE; GerPE is required for the formation of functionally normal spores. It could be involved in the establishment of a normal spore coat structure and (or) permeability, which allows the access of germinants to their receptor.


Pssm-ID: 287884  Cd Length: 123  Bit Score: 99.84  E-value: 5.60e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558474997    4 ISCVTNILINNIDNSSTFICGDTGRIGAKSNVFALHREVPVFIEDEGNFSDYKVFSKKIPTIPLDENLEQEVLNLSPRIK 83
Cdd:pfam10970   1 TSVVQFVKVNSLGISSVLQVGDTEEIELKSRALAVQRQLSLFYGNEGRLDDFEIFTEPIPLPLPETPVQSAFVHEKPFIK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 558474997   84 VGQIKVNSISTSASFQVGSNHRMDLESRIVNIRQFVDAPPS 124
Cdd:pfam10970  81 VRSIKIRGVSSSSVFHIGSTSYVNAESRVKHIRQLISDEPL 121
 
Name Accession Description Interval E-value
GerPE pfam10970
Spore germination protein GerPE; GerPE is required for the formation of functionally normal ...
 4-124 5.60e-28

Spore germination protein GerPE; GerPE is required for the formation of functionally normal spores. It could be involved in the establishment of a normal spore coat structure and (or) permeability, which allows the access of germinants to their receptor.


Pssm-ID: 287884  Cd Length: 123  Bit Score: 99.84  E-value: 5.60e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558474997    4 ISCVTNILINNIDNSSTFICGDTGRIGAKSNVFALHREVPVFIEDEGNFSDYKVFSKKIPTIPLDENLEQEVLNLSPRIK 83
Cdd:pfam10970   1 TSVVQFVKVNSLGISSVLQVGDTEEIELKSRALAVQRQLSLFYGNEGRLDDFEIFTEPIPLPLPETPVQSAFVHEKPFIK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 558474997   84 VGQIKVNSISTSASFQVGSNHRMDLESRIVNIRQFVDAPPS 124
Cdd:pfam10970  81 VRSIKIRGVSSSSVFHIGSTSYVNAESRVKHIRQLISDEPL 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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