|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
1-530 |
0e+00 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 1010.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 1 MTAKAAQKISLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVITLIPFLGAPVLQAIFIWMSKVGSFAFSFLPVM 80
Cdd:PRK10110 1 MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAVLKANNIQSVIGIQSIDTGILGAVIAGVIIWM 160
Cdd:PRK10110 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 161 LHERFHNIRLPDALAFFGGTRFVPIVTLVVMGLFGLIIPLIWPVFAMGINGIGRIINGAGDFGPMIFGTGERLLLPFGLQ 240
Cdd:PRK10110 161 LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 241 HILVALIRFTEAGGTMEVCGHDVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
Cdd:PRK10110 241 HILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 321 IKGLLISGVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIGNTDGNVIDFVVFGILHGLSTKWYLV 400
Cdd:PRK10110 321 IKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 401 PVVAAIWFAVYYGIFRFAITRFNLKTPGRDIDTATSVEQAVAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVA 480
Cdd:PRK10110 401 PVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVK 480
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 556496297 481 DMSKVDTNALKANRAIGVVQLNQHNLQVVIGPQVQSVKDELATLMRTVEA 530
Cdd:PRK10110 481 DMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA 530
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
8-525 |
0e+00 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 725.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 8 KISLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVITLIPFLGAPVLQAIFIWMSKVGSFAFSFLPVMFCIAIPL 87
Cdd:TIGR02004 1 KATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 88 GLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAVlkANNIQSVIGIQSIDTGILGAVIAGVIIWMLHERFHN 167
Cdd:TIGR02004 81 GLAREEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLR--EAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 168 IRLPDALAFFGGTRFVPIVTLVVMGLFGLIIPLIWPVFAMGINGIGRIINGAGDFGPMIFGTGERLLLPFGLQHILVALI 247
Cdd:TIGR02004 159 VQMPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 248 RFTEAGGTMEVCGHDVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLIS 327
Cdd:TIGR02004 239 RFTEAGGSAVVCGKEVSGALNIFYAELQCNLPISAVPSATAFLSQGKMPTFLGGLPGAALAMYHCARPANRHKIKALLLS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 328 GVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIGNTDGNVIDFVVFGILHGLSTKWYLVPVVAAIW 407
Cdd:TIGR02004 319 GVVACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNTDGNLIDFLVFGVLQGTYTKWYLVPIVAAIW 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 408 FAVYYGIFRFAITRFNLKTPGRD-IDTATSVEQAVAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVADMSKVD 486
Cdd:TIGR02004 399 FVVYYFVFKTAITTFDLKTPGREkVLDAEEYTEQEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVD 478
|
490 500 510
....*....|....*....|....*....|....*....
gi 556496297 487 TNALKANRAIGVVQLNQHNLQVVIGPQVQSVKDELATLM 525
Cdd:TIGR02004 479 DAKLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
11-525 |
2.01e-77 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 251.01 E-value: 2.01e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 11 LWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVITLIPFLgapvlQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLA 90
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGSFL-----SGTYQILNAAGDAVFYFLPLLFAIGAAKGFG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 91 renkGVAAFAGFVGYAVMNlavnfwltakgilPTTDAAVLKANNIQSVIGIQSI---DTGILGAVIAGVIIWMLhERFHN 167
Cdd:COG1263 83 ----GNPALAAVIGYLLVH-------------PTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 168 IRLPDALAFFggtrFVPIVTLVVMGLFGL-IIPLIWPVFAMGIN-GIGRIINGAGDFGPMIFGTGERLLLPFGLQHILVA 245
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAaGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 246 LIRFtEAGGTmevcghdvsGALTIFQAqlscptthgfsesatrflsqgkMPAFLGGLPGAALAMYHCARPenRHKIKGLL 325
Cdd:COG1263 221 IFWF-LLGGT---------GDDGLFPI----------------------LAAAMFGQPGAALAVYLKAKP--NKKVKGLA 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 326 ISGVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTI-GNTDGNVIDFVVFgiLHGLSTKWyLVPVVA 404
Cdd:COG1263 267 ISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAfSFGVGGLIDFPSI--LNPGATNL-LLYLIG 343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 405 AIWFAVYYGIFRFAItrfnlktpGRDIDTATSVEQAVAGTVGKsgyNTPAILAALGGADNITSLDNCITRLRLSVADMSK 484
Cdd:COG1263 344 LVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKE---EAEAAAAALGGGGGLLLLEADITVLLLTLVDVVI 412
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 556496297 485 VDTNALKANRAIGVVQLNQHNLQVVIGPQVQSVKDELATLM 525
Cdd:COG1263 413 VVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIII 453
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
19-361 |
4.44e-60 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 201.04 E-value: 4.44e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 19 GKTFMLPVALLSFCGIMLGIGSSLSSkdvITLIPFLGAPVLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLArENKGVAA 98
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPND---TTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 99 FAGFVGYAVMNL--AVNFWLTAKGIlpttdaavlkaNNIQSVIGIQSIDTGILGAVIAGVIIWMLHERFHN---IRLPDA 173
Cdd:pfam02378 77 AAGLIGLLSFNLaaAISVALTAAGL-----------SGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 174 LAFFGGTRFVPIVT-LVVMGLFGLIIPLIWPVFAMGINGIGRIINGAG-DFGPMIFGTGERLLLPFGLQHILVALIRFTE 251
Cdd:pfam02378 146 LPFFVGKRFVPIITgFVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFLP 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 252 AGGTMEVCGHDVSGAltifqaqlscptthgfsesATRFLSQGKMPAFLGGlPGAALAMYHCARPENRHKIKGLLISGVIA 331
Cdd:pfam02378 226 IGGSNPIANQQAYGA-------------------GAAHILTGGFDVMFGG-PGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 556496297 332 CVVGGTTEPIEFLFLFVAPVLYLIHAVLTG 361
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
454-525 |
9.42e-27 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 103.00 E-value: 9.42e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556496297 454 AILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKANRAIGVVQLNQHNLQVVIGPQV-QSVKDELATLM 525
Cdd:cd00212 6 DILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
1-530 |
0e+00 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 1010.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 1 MTAKAAQKISLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVITLIPFLGAPVLQAIFIWMSKVGSFAFSFLPVM 80
Cdd:PRK10110 1 MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAVLKANNIQSVIGIQSIDTGILGAVIAGVIIWM 160
Cdd:PRK10110 81 FCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 161 LHERFHNIRLPDALAFFGGTRFVPIVTLVVMGLFGLIIPLIWPVFAMGINGIGRIINGAGDFGPMIFGTGERLLLPFGLQ 240
Cdd:PRK10110 161 LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 241 HILVALIRFTEAGGTMEVCGHDVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
Cdd:PRK10110 241 HILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 321 IKGLLISGVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIGNTDGNVIDFVVFGILHGLSTKWYLV 400
Cdd:PRK10110 321 IKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHGLSTKWYMV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 401 PVVAAIWFAVYYGIFRFAITRFNLKTPGRDIDTATSVEQAVAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVA 480
Cdd:PRK10110 401 PVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDNCITRLRLSVK 480
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 556496297 481 DMSKVDTNALKANRAIGVVQLNQHNLQVVIGPQVQSVKDELATLMRTVEA 530
Cdd:PRK10110 481 DMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMHTVQA 530
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
8-525 |
0e+00 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 725.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 8 KISLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVITLIPFLGAPVLQAIFIWMSKVGSFAFSFLPVMFCIAIPL 87
Cdd:TIGR02004 1 KATFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 88 GLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAVlkANNIQSVIGIQSIDTGILGAVIAGVIIWMLHERFHN 167
Cdd:TIGR02004 81 GLAREEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPEQLR--EAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 168 IRLPDALAFFGGTRFVPIVTLVVMGLFGLIIPLIWPVFAMGINGIGRIINGAGDFGPMIFGTGERLLLPFGLQHILVALI 247
Cdd:TIGR02004 159 VQMPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 248 RFTEAGGTMEVCGHDVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLIS 327
Cdd:TIGR02004 239 RFTEAGGSAVVCGKEVSGALNIFYAELQCNLPISAVPSATAFLSQGKMPTFLGGLPGAALAMYHCARPANRHKIKALLLS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 328 GVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIGNTDGNVIDFVVFGILHGLSTKWYLVPVVAAIW 407
Cdd:TIGR02004 319 GVVACAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNTDGNLIDFLVFGVLQGTYTKWYLVPIVAAIW 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 408 FAVYYGIFRFAITRFNLKTPGRD-IDTATSVEQAVAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVADMSKVD 486
Cdd:TIGR02004 399 FVVYYFVFKTAITTFDLKTPGREkVLDAEEYTEQEVAYKKTGGYDAAAILAALGGQENIQSLDNCITRLRLVVADANKVD 478
|
490 500 510
....*....|....*....|....*....|....*....
gi 556496297 487 TNALKANRAIGVVQLNQHNLQVVIGPQVQSVKDELATLM 525
Cdd:TIGR02004 479 DAKLKQLGALGVVKLDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
16-526 |
2.87e-126 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 378.36 E-value: 2.87e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 16 QQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVITLIPFLGAPVLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLAReNKG 95
Cdd:TIGR02002 9 QKIGKALMLPVAVLPVAGILLGFGNANQNNQVFSFLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALGLAG-NDG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 96 VAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAvlkanNIQSVIGIQSIDTGILGAVIAGVIIWMLHERFHNIRLPDALA 175
Cdd:TIGR02002 88 VAGLAALVGYLIMNKTMGVVAGLTLLLIASEIA-----SFASVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLPEYLG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 176 FFGGTRFVPIVTLVVMGLFGLIIPLIWPVFAMGINGIGRIINGAGDF-GPMIFGTGERLLLPFGLQHILVALIRFtEAGG 254
Cdd:TIGR02002 163 FFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNPVvAFFIFGFIERSLIPFGLHHIFNAPFWF-EFGS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 255 TMEVCGHDVSGALTIFQAQLSCPTthgfSESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGVIACVV 334
Cdd:TIGR02002 242 YTNEAGNLFRGDQPIFMAQLKDGV----AFTAGGFLS-GGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALTSFL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 335 GGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIGNT-DGNVIDFVVFGILHGlSTKWYLVPVVAAIWFAVYYG 413
Cdd:TIGR02002 317 TGITEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTfSGGAIDFILYGLLSN-RSKAWLFIIVGIGYAIIYYF 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 414 IFRFAITRFNLKTPGRDIDTATsveqavAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKAN 493
Cdd:TIGR02002 396 LFRFLIKKLNLKTPGREDATAE------AKATGEPSELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKL 469
|
490 500 510
....*....|....*....|....*....|...
gi 556496297 494 RAIGVVQLNqHNLQVVIGPQVQSVKDELATLMR 526
Cdd:TIGR02002 470 GAAGVLVVG-NNVQAIFGPKSDTIKSEMHDIIR 501
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
13-521 |
1.60e-118 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 357.54 E-value: 1.60e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 13 EFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVItLIPFLGApvlqaifiwmskVGSFAFSFLPVMFCIAIPLGLARE 92
Cdd:TIGR01998 3 GYFQKLGRALMLPIATLPVAALLLRIGNATHGADLL-VANFFIA------------AGGAIFDNLGLLFAIGVAIGMSKD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 93 NKGVAAFAGFVGY--AVMNLAVNFWLTAKGILPTTDAAVLKANNIqsVIGIqsidtgilgavIAGVIIWMLHERFHNIRL 170
Cdd:TIGR01998 70 NDGAAALAGLVAYfvVTKVLSPPPLAAALGIKSEINMAFSAWKNV--FVGI-----------LAGLIAGALYNRFSEIKL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 171 PDALAFFGGTRFVPIVTLVVMGLFGLIIPLIWPVFAMGINGIGRIINGAGDFGPMIFGTGERLLLPFGLQHILVALIRFT 250
Cdd:TIGR01998 137 PEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFD 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 251 EAGgtmevcghdvsgaLTIFQAQLSCPTTHGFSESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGVI 330
Cdd:TIGR01998 217 VAG-------------INDFGNFTGGGDLNRFKGIAGMFMA-GFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAF 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 331 ACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIG-NTDGNVIDFVVFGILhGLSTKWYLVPVVAAIWFA 409
Cdd:TIGR01998 283 ASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGfSFSAGLIDYVLSFNN-PTANQPLMLLVQGLVFFA 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 410 VYYGIFRFAITRFNLKTPGR-DIDTATSVEQAVAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVADMSKVDTN 488
Cdd:TIGR01998 362 LYYVVFRFAIRRFNLKTPGReDEDPEGATAAAVTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEP 441
|
490 500 510
....*....|....*....|....*....|...
gi 556496297 489 ALKANRAIGVVQLNQHNLQVVIGPQVQSVKDEL 521
Cdd:TIGR01998 442 ALKALGARGVVKLGKHNLQVILGPLAEIVAGEM 474
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
16-526 |
2.60e-99 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 308.18 E-value: 2.60e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 16 QQLGKTFMLPVALLSFCGIMLGIGSSLSSkdvitlipFLGAPVLQAifiwMSKVGSFAFSFLPVMFCIAIPLGLAReNKG 95
Cdd:PRK11089 10 QKVGKSLMLPVSVLPIAGILLGVGSANFS--------WLPAVVSHV----MAEAGGSVFANMPLIFAIGVALGFTN-NDG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 96 VAAFAGFVGYAVM--NLAVNfwltakgilpttdAAVLKANNIQSVIGIQSIDTGILGAVIAGVIIWMLHERFHNIRLPDA 173
Cdd:PRK11089 77 VSALAAVVAYGIMvkTMAVV-------------APLVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKLPEY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 174 LAFFGGTRFVPIVTLVVMGLFGLIIPLIWPVFAmgiNGIGRIINGAGDFGPM----IFGTGERLLLPFGLQHILVALIRF 249
Cdd:PRK11089 144 LGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIG---SAIQTFSQWAAYQNPVvafgIYGFVERSLVPFGLHHIWNVPFQM 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 250 tEAGGTMEVCGHDVSGALTIFQAqlscptthgfSESATRFLSQGKMPAFLGgLPGAALAMYHCARPENRHKIKGLLISGV 329
Cdd:PRK11089 221 -QIGEYTNAAGQVFHGDIPRYMA----------GDPTAGKLSGGFLFKMYG-LPAAAIAIWHSAKPENRAKVGGIMISAA 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 330 IACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIGNTDGN-VIDFVVfgiLHGLSTKWYLVPVVAAIWF 408
Cdd:PRK11089 289 LTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHgLIDFIV---LSGNSSKLWLFPIVGIGYA 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 409 AVYYGIFRFAITRFNLKTPGRDidtATSVEQAVAGTVGKSGYntpaILAALGGADNITSLDNCITRLRLSVADMSKVDTN 488
Cdd:PRK11089 366 IVYYTIFRVLIKALDLKTPGRE---DETEDAKATGTSEMAPA----LVAAFGGKENITNLDACITRLRVSVADVSKVDQA 438
|
490 500 510
....*....|....*....|....*....|....*...
gi 556496297 489 ALKANRAIGVVqLNQHNLQVVIGPQVQSVKDELATLMR 526
Cdd:PRK11089 439 GLKKLGAAGVV-VAGSGVQAIFGTKSDNLKTEMDEYIR 475
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
70-372 |
6.88e-84 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 261.87 E-value: 6.88e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 70 GSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFVGYAVMNLAVNFWLTAKGILPTTDAAVLKanniqsvigiqsiDTGIL 149
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVGNFFGFEIAKVG-------------YTGVV 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 150 GAVIAGVIIWMLHERFHNIRLPDALAFFGGTRFVPIVTLVVMGLFGLIIPLIWPVFamGINGIGRIINGAG-DFGPMIFG 228
Cdd:TIGR00852 68 GPIIVGAIALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGgALGGAIFG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 229 TGERLLLPFGLQHILVALIRFTEAGGTMEVCGHDVSGALTIFQAQLSCPTTHGFSESATRFLSQGKMPAFLGGLPGAALA 308
Cdd:TIGR00852 146 FLYRLLVPTGLHHIFYAIFIQLIAGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPA 225
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556496297 309 MYHCARPENRHKIKGLLISGVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGV 372
Cdd:TIGR00852 226 MYGVALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
11-525 |
2.01e-77 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 251.01 E-value: 2.01e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 11 LWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSKDVITLIPFLgapvlQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLA 90
Cdd:COG1263 8 LFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGEGSFL-----SGTYQILNAAGDAVFYFLPLLFAIGAAKGFG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 91 renkGVAAFAGFVGYAVMNlavnfwltakgilPTTDAAVLKANNIQSVIGIQSI---DTGILGAVIAGVIIWMLhERFHN 167
Cdd:COG1263 83 ----GNPALAAVIGYLLVH-------------PTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 168 IRLPDALAFFggtrFVPIVTLVVMGLFGL-IIPLIWPVFAMGIN-GIGRIINGAGDFGPMIFGTGERLLLPFGLQHILVA 245
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAaGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 246 LIRFtEAGGTmevcghdvsGALTIFQAqlscptthgfsesatrflsqgkMPAFLGGLPGAALAMYHCARPenRHKIKGLL 325
Cdd:COG1263 221 IFWF-LLGGT---------GDDGLFPI----------------------LAAAMFGQPGAALAVYLKAKP--NKKVKGLA 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 326 ISGVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTI-GNTDGNVIDFVVFgiLHGLSTKWyLVPVVA 404
Cdd:COG1263 267 ISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAfSFGVGGLIDFPSI--LNPGATNL-LLYLIG 343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 405 AIWFAVYYGIFRFAItrfnlktpGRDIDTATSVEQAVAGTVGKsgyNTPAILAALGGADNITSLDNCITRLRLSVADMSK 484
Cdd:COG1263 344 LVIAFVYYFVFTFLI--------GREDEEEEEKLATKADAKKE---EAEAAAAALGGGGGLLLLEADITVLLLTLVDVVI 412
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 556496297 485 VDTNALKANRAIGVVQLNQHNLQVVIGPQVQSVKDELATLM 525
Cdd:COG1263 413 VVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIII 453
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
14-521 |
1.04e-76 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 254.02 E-value: 1.04e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 14 FFQQLGKTFMLPVALLSFCGIMLGIGSSlsskDVITlIPFLgapvlqaifiwmSKVGSFAFSFLPVMFCIAIPLGLAREN 93
Cdd:PRK10255 6 FFQRLGRALQLPIAVLPVAALLLRFGQP----DLLN-VAFI------------AQAGGAIFDNLALIFAIGVASSWSKDS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 94 KGVAAFAGFVGYAVMNLAVnfwltaKGILPTtdaavlkanniqsvigiqsIDTGILGAVIAGVIIWMLHERFHNIRLPDA 173
Cdd:PRK10255 69 AGAAALAGAVGYFVLTKAM------VTINPE-------------------INMGVLAGIITGLVGGAAYNRWSDIKLPDF 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 174 LAFFGGTRFVPIVT----LVVMGLFGLIipliWPVFAMGINGIGRIINGAGDFGPMIFGTGERLLLPFGLQHILVALI-- 247
Cdd:PRK10255 124 LSFFGGKRFVPIATgffcLVLAAIFGYV----WPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAwf 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 248 ---RFTEAGGTMevcghdVSGALTIFQAQlscptthgfSESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGL 324
Cdd:PRK10255 200 qigEFTNAAGTV------FHGDINRFYAG---------DGTAGMFMS-GFFPIMMFGLPGAALAMYFAAPKERRPMVGGM 263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 325 LISGVIACVVGGTTEPIEFLFLFVAPVLYLIHAVLTGLGFTVMAVLGVTIG-NTDGNVIDFVVFGILHGLSTKWYLVPVV 403
Cdd:PRK10255 264 LLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGfSFSAGAIDYALMYNLPAASQNVWMLLVM 343
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 404 AAIWFAVYYGIFRFAITRFNLKTPGRDiDTATSVEQAVAGTVGKSGYNTPA--ILAALGGADNITSLDNCITRLRLSVAD 481
Cdd:PRK10255 344 GVVFFAIYFVLFSAVIRMFNLKTPGRE-DKEDEIVTEEANSNTEEGLTQLAtnYIAAVGGTDNLKAIDACITRLRLTVAD 422
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 556496297 482 MSKVDTNALKANRAIGVVQLNQHNLQVVIGPQVQSVKDEL 521
Cdd:PRK10255 423 SARVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAM 462
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
19-361 |
4.44e-60 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 201.04 E-value: 4.44e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 19 GKTFMLPVALLSFCGIMLGIGSSLSSkdvITLIPFLGAPVLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLArENKGVAA 98
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLPND---TTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 99 FAGFVGYAVMNL--AVNFWLTAKGIlpttdaavlkaNNIQSVIGIQSIDTGILGAVIAGVIIWMLHERFHN---IRLPDA 173
Cdd:pfam02378 77 AAGLIGLLSFNLaaAISVALTAAGL-----------SGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKnitIKLPDS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 174 LAFFGGTRFVPIVT-LVVMGLFGLIIPLIWPVFAMGINGIGRIINGAG-DFGPMIFGTGERLLLPFGLQHILVALIRFTE 251
Cdd:pfam02378 146 LPFFVGKRFVPIITgFVTLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFLP 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 252 AGGTMEVCGHDVSGAltifqaqlscptthgfsesATRFLSQGKMPAFLGGlPGAALAMYHCARPENRHKIKGLLISGVIA 331
Cdd:pfam02378 226 IGGSNPIANQQAYGA-------------------GAAHILTGGFDVMFGG-PGATLALYAAAFLFKKSKVKKLLGSAALT 285
|
330 340 350
....*....|....*....|....*....|
gi 556496297 332 CVVGGTTEPIEFLFLFVAPVLYLIHAVLTG 361
Cdd:pfam02378 286 PFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
454-525 |
6.43e-29 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 109.05 E-value: 6.43e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556496297 454 AILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKANRAIGVVQlNQHNLQVVIGPQVQSVKDELATLM 525
Cdd:COG1264 6 DILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVK-NGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
420-511 |
3.35e-27 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 104.75 E-value: 3.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 420 TRFNLKTPGRDIDTAtsvEQAVAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKANRAIGVV 499
Cdd:TIGR00826 1 TRLRLKTPGREKADE---EAIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVN 77
|
90
....*....|..
gi 556496297 500 QLnQHNLQVVIG 511
Cdd:TIGR00826 78 PL-QRAVQVISG 88
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
454-525 |
9.42e-27 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 103.00 E-value: 9.42e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556496297 454 AILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKANRAIGVVQLNQHNLQVVIGPQV-QSVKDELATLM 525
Cdd:cd00212 6 DILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
410-527 |
8.36e-14 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 69.36 E-value: 8.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556496297 410 VYYGIFRFAITRFNLKTPGRD---------IDTATSVEQAVAGTVGKSGYNTPAILAALGGADNITSLDNCITRLRLSVA 480
Cdd:PRK09702 22 LYFVVFRTLILQFNMCTPGREdaevklyskAEYKASRGQTTAAEPKKELDQAAGILQALGGVGNISSINNCATRLRIALH 101
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 556496297 481 DMSK-VDTNALKANRAIGVVQlNQHNLQVVIGPQVQSVKDELATLMRT 527
Cdd:PRK09702 102 DMSQtLDDEVFKKLGAHGVFR-SGDAIQVIIGLHVSQLREQLDSLINS 148
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
454-484 |
1.61e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 64.31 E-value: 1.61e-13
10 20 30
....*....|....*....|....*....|.
gi 556496297 454 AILAALGGADNITSLDNCITRLRLSVADMSK 484
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
452-525 |
2.10e-08 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 56.73 E-value: 2.10e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556496297 452 TPAILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKA-NRAIGVVQlNQHNLQVVIGPQVQSVKDELATLM 525
Cdd:PRK09796 9 ARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTiPGVLGVVR-SDNQCQVIIGNTVSQAFQEVVSLL 82
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
455-512 |
1.35e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 53.91 E-value: 1.35e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 556496297 455 ILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKANRAIGVVQLNQHNLQVVIGP 512
Cdd:PRK09586 12 ILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGP 69
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
455-517 |
1.72e-07 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 53.95 E-value: 1.72e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556496297 455 ILAALGGADNITSLDNCITRLRLSVADMSKVDTNALKANRAIGVVQLNQHNLQVVIGPQVQSV 517
Cdd:PRK09824 10 IVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADV 72
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
459-527 |
1.72e-04 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 43.87 E-value: 1.72e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556496297 459 LGGADNITSLDNCITRLRLSVADMSKVDTNAL-KANRAIGVVQL-NQHnlQVVIGPQ-VQSVKDELATLMRT 527
Cdd:PRK14905 285 LGGKDNISALTHCASRIRVMLRNDGHIDKSAIeKIDCVKGLFSIaNQY--QIILGAGiVEKIHEEMKALLAR 354
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
459-514 |
1.87e-04 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 43.91 E-value: 1.87e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 556496297 459 LGGADNITSLDNCITRLRLSVADMSKVDTNALKANRAIGVVQLNQHNLQVVIGPQV 514
Cdd:PRK11007 17 VGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEV 72
|
|
| |
