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Conserved domains on  [gi|556488412|ref|WP_023336145|]
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MULTISPECIES: YecR family lipoprotein [Enterobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YecR super family cl10256
YecR-like lipoprotein; The YecR-like family of lipoproteins includes the YecR protein from E. ...
 32-98 8.75e-22

YecR-like lipoprotein; The YecR-like family of lipoproteins includes the YecR protein from E. coli. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 110 amino acids in length.


The actual alignment was detected with superfamily member pfam13992:

Pssm-ID: 415845  Cd Length: 73  Bit Score: 81.32  E-value: 8.75e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556488412   32 GIVRLDYGQAALQNAYSDEYVNNGTAAKACQSMGYATASAYGQPIKTCTLTSGSLCLNESVTIQYKC 98
Cdd:pfam13992   7 GIVRLSYDYSLNETPQADDYQALGTASRRCQQWGYTGAIPFGQPVRTCSITAGSLCLNTTVTLSYQC 73
 
Name Accession Description Interval E-value
YecR pfam13992
YecR-like lipoprotein; The YecR-like family of lipoproteins includes the YecR protein from E. ...
 32-98 8.75e-22

YecR-like lipoprotein; The YecR-like family of lipoproteins includes the YecR protein from E. coli. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 110 amino acids in length.


Pssm-ID: 404813  Cd Length: 73  Bit Score: 81.32  E-value: 8.75e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556488412   32 GIVRLDYGQAALQNAYSDEYVNNGTAAKACQSMGYATASAYGQPIKTCTLTSGSLCLNESVTIQYKC 98
Cdd:pfam13992   7 GIVRLSYDYSLNETPQADDYQALGTASRRCQQWGYTGAIPFGQPVRTCSITAGSLCLNTTVTLSYQC 73
 
Name Accession Description Interval E-value
YecR pfam13992
YecR-like lipoprotein; The YecR-like family of lipoproteins includes the YecR protein from E. ...
 32-98 8.75e-22

YecR-like lipoprotein; The YecR-like family of lipoproteins includes the YecR protein from E. coli. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 110 amino acids in length.


Pssm-ID: 404813  Cd Length: 73  Bit Score: 81.32  E-value: 8.75e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556488412   32 GIVRLDYGQAALQNAYSDEYVNNGTAAKACQSMGYATASAYGQPIKTCTLTSGSLCLNESVTIQYKC 98
Cdd:pfam13992   7 GIVRLSYDYSLNETPQADDYQALGTASRRCQQWGYTGAIPFGQPVRTCSITAGSLCLNTTVTLSYQC 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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