|
Name |
Accession |
Description |
Interval |
E-value |
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
38-364 |
2.33e-89 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 270.41 E-value: 2.33e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 38 GNYWVRVIDFALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASPhllevfpilnvwfpdgLHTSYLLIIPLA 117
Cdd:COG4177 1 SPYYLSLLTLILIYAILALGLNLLLGYTGLLSLGHAAFFGIGAYAAALLTTH----------------LGLPFWLALLLA 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 118 ALVAAVCGILLGAPTLKLRGDYLAIVTLGFGEIIRILMRNLDRpvnITNGAKGITGVDTLNLFGLKFSGVYHWLGFkvpa 197
Cdd:COG4177 65 GLVAALLGLLIGLPALRLRGDYLAIATLAFAEIVRLLALNLES---LTGGADGLSGIPRPTLFGLDLGSPLAFYYL---- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 198 lwlwyylLMLVIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPE 277
Cdd:COG4177 138 -------VLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPE 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 278 SFTLQESIAVLAMVVLGGMGHIPGVILGAILLTALPELLRSQAApvqqalfgtvlidpevLRQLFYGLALVLVMLVRPAG 357
Cdd:COG4177 211 SFSFLLSIEILLMVVLGGLGSLLGPVLGAVLLVLLPELLRSLPE----------------YRLLIFGLLLILVVLFRPRG 274
|
....*..
gi 556427022 358 IWPVRHK 364
Cdd:COG4177 275 LAGLLRR 281
|
|
| livM |
PRK11301 |
leucine/isoleucine/valine transporter permease subunit; Provisional |
21-366 |
1.60e-85 |
|
leucine/isoleucine/valine transporter permease subunit; Provisional
Pssm-ID: 236896 [Multi-domain] Cd Length: 419 Bit Score: 265.29 E-value: 1.60e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 21 LFCLALLVAPVVATQLGGNYWVRVIDFALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALmasphllevfpiLNV 100
Cdd:PRK11301 91 LFLVALLVAAVAWPFFVSRGAVDIATLTLIYVILGLGLNVVVGLAGLLDLGYVGFYAVGAYTYAL------------LNH 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 101 WFpdGLhtSYLLIIPLAALVAAVCGILLGAPTLKLRGDYLAIVTLGFGEIIRILMRNLdrpVNITNGAKGITGVDTLNLF 180
Cdd:PRK11301 159 YY--GL--GFWECLPIAGLMAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLLNN---TEITGGPNGISQIPKPTLF 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 181 GLKFS--------GVYH-WLGFKVPALWLWY---YLLMLVIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNY 248
Cdd:PRK11301 232 GLEFSrtareggwDTFHeFFGLKYDPSDRVIflyLVALLLVVLTLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRI 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 249 KLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAVLAMVVLGGMGHIPGVILGAILLTALPELLRSQAApvqqalf 328
Cdd:PRK11301 312 KLSAFTIGAAFAGFAGTFFAARQGFVSPESFTFIESAFILAIVVLGGMGSQFGVILAAILLVVLPELMRDFNE------- 384
|
330 340 350
....*....|....*....|....*....|....*...
gi 556427022 329 gtvlidpevLRQLFYGLALVLVMLVRPAGIWPVRHKEV 366
Cdd:PRK11301 385 ---------YRMLMFGLLMVLMMIWRPQGLLPMTRPHL 413
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
48-360 |
1.27e-74 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 231.95 E-value: 1.27e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 48 ALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASphllevfpilnvwfpdGLHTSYLLIIPLAALVAAVCGIL 127
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALLAT----------------RLGLPFWLALLAAGLVAALVGLL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 128 LGAPTLKLRGDYLAIVTLGFGEIIRILMRNLDRpvnITNGAKGITGVDTLNLFGLKFSGVYHWLGFkvpalwlwyylLML 207
Cdd:cd06581 65 LGLPALRLRGVYFAIATLAFAEIVRLLALNWSS---LTGGSNGLSGIPPPLLGGLLLSSPLAFYYL-----------VLA 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 208 VIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAV 287
Cdd:cd06581 131 VLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIEL 210
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556427022 288 LAMVVLGGMGHIPGVILGAILLTALPELLRSQAapvqqalfgtvlidpEVLRQLFYGLALVLVMLVRPAGIWP 360
Cdd:cd06581 211 LLMVVLGGLGSLLGPVLGAALLVLLPELLRSLG---------------PGLRLLVFGLLLILVVLFLPRGLVG 268
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
42-351 |
2.27e-35 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 130.07 E-value: 2.27e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 42 VRVIDFALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASPHLLEVFpilnvwfpdglhtsylLIIPLAALVA 121
Cdd:pfam02653 3 LNILTLASIYAIAALGLTLIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLW----------------LALPVGILVG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 122 AVCGILLGAPTLKLRGDYLAIVTLGFGEIIRILMRNLDRPVNITNGAKGITGVDTLNLFGLKFSGVYHWLgfkvpalwlw 201
Cdd:pfam02653 67 AAVGLLIGILTLRLKINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFL---------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 202 yyllmLVIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTL 281
Cdd:pfam02653 137 -----LALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGV 211
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 282 QESIAVLAMVVLGGMGHIPGVILGAILLTALpellrsqaapvqQALFGTVLIDPEVLRQLFYGLALVLVM 351
Cdd:pfam02653 212 GLGLDAIAAVVLGGAGSPIGVVIGSLIIGLV------------QSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
38-364 |
2.33e-89 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 270.41 E-value: 2.33e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 38 GNYWVRVIDFALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASPhllevfpilnvwfpdgLHTSYLLIIPLA 117
Cdd:COG4177 1 SPYYLSLLTLILIYAILALGLNLLLGYTGLLSLGHAAFFGIGAYAAALLTTH----------------LGLPFWLALLLA 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 118 ALVAAVCGILLGAPTLKLRGDYLAIVTLGFGEIIRILMRNLDRpvnITNGAKGITGVDTLNLFGLKFSGVYHWLGFkvpa 197
Cdd:COG4177 65 GLVAALLGLLIGLPALRLRGDYLAIATLAFAEIVRLLALNLES---LTGGADGLSGIPRPTLFGLDLGSPLAFYYL---- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 198 lwlwyylLMLVIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPE 277
Cdd:COG4177 138 -------VLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPE 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 278 SFTLQESIAVLAMVVLGGMGHIPGVILGAILLTALPELLRSQAApvqqalfgtvlidpevLRQLFYGLALVLVMLVRPAG 357
Cdd:COG4177 211 SFSFLLSIEILLMVVLGGLGSLLGPVLGAVLLVLLPELLRSLPE----------------YRLLIFGLLLILVVLFRPRG 274
|
....*..
gi 556427022 358 IWPVRHK 364
Cdd:COG4177 275 LAGLLRR 281
|
|
| livM |
PRK11301 |
leucine/isoleucine/valine transporter permease subunit; Provisional |
21-366 |
1.60e-85 |
|
leucine/isoleucine/valine transporter permease subunit; Provisional
Pssm-ID: 236896 [Multi-domain] Cd Length: 419 Bit Score: 265.29 E-value: 1.60e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 21 LFCLALLVAPVVATQLGGNYWVRVIDFALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALmasphllevfpiLNV 100
Cdd:PRK11301 91 LFLVALLVAAVAWPFFVSRGAVDIATLTLIYVILGLGLNVVVGLAGLLDLGYVGFYAVGAYTYAL------------LNH 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 101 WFpdGLhtSYLLIIPLAALVAAVCGILLGAPTLKLRGDYLAIVTLGFGEIIRILMRNLdrpVNITNGAKGITGVDTLNLF 180
Cdd:PRK11301 159 YY--GL--GFWECLPIAGLMAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLLNN---TEITGGPNGISQIPKPTLF 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 181 GLKFS--------GVYH-WLGFKVPALWLWY---YLLMLVIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNY 248
Cdd:PRK11301 232 GLEFSrtareggwDTFHeFFGLKYDPSDRVIflyLVALLLVVLTLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRI 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 249 KLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAVLAMVVLGGMGHIPGVILGAILLTALPELLRSQAApvqqalf 328
Cdd:PRK11301 312 KLSAFTIGAAFAGFAGTFFAARQGFVSPESFTFIESAFILAIVVLGGMGSQFGVILAAILLVVLPELMRDFNE------- 384
|
330 340 350
....*....|....*....|....*....|....*...
gi 556427022 329 gtvlidpevLRQLFYGLALVLVMLVRPAGIWPVRHKEV 366
Cdd:PRK11301 385 ---------YRMLMFGLLMVLMMIWRPQGLLPMTRPHL 413
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
48-360 |
1.27e-74 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 231.95 E-value: 1.27e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 48 ALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASphllevfpilnvwfpdGLHTSYLLIIPLAALVAAVCGIL 127
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALLAT----------------RLGLPFWLALLAAGLVAALVGLL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 128 LGAPTLKLRGDYLAIVTLGFGEIIRILMRNLDRpvnITNGAKGITGVDTLNLFGLKFSGVYHWLGFkvpalwlwyylLML 207
Cdd:cd06581 65 LGLPALRLRGVYFAIATLAFAEIVRLLALNWSS---LTGGSNGLSGIPPPLLGGLLLSSPLAFYYL-----------VLA 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 208 VIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAV 287
Cdd:cd06581 131 VLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIEL 210
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556427022 288 LAMVVLGGMGHIPGVILGAILLTALPELLRSQAapvqqalfgtvlidpEVLRQLFYGLALVLVMLVRPAGIWP 360
Cdd:cd06581 211 LLMVVLGGLGSLLGPVLGAALLVLLPELLRSLG---------------PGLRLLVFGLLLILVVLFLPRGLVG 268
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
42-351 |
2.27e-35 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 130.07 E-value: 2.27e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 42 VRVIDFALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASPHLLEVFpilnvwfpdglhtsylLIIPLAALVA 121
Cdd:pfam02653 3 LNILTLASIYAIAALGLTLIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLW----------------LALPVGILVG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 122 AVCGILLGAPTLKLRGDYLAIVTLGFGEIIRILMRNLDRPVNITNGAKGITGVDTLNLFGLKFSGVYHWLgfkvpalwlw 201
Cdd:pfam02653 67 AAVGLLIGILTLRLKINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFL---------- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 202 yyllmLVIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTL 281
Cdd:pfam02653 137 -----LALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGV 211
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 282 QESIAVLAMVVLGGMGHIPGVILGAILLTALpellrsqaapvqQALFGTVLIDPEVLRQLFYGLALVLVM 351
Cdd:pfam02653 212 GLGLDAIAAVVLGGAGSPIGVVIGSLIIGLV------------QSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
47-365 |
6.65e-24 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 99.75 E-value: 6.65e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 47 FALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASphllevfpilnvwfpdGLHTSYLLIIPLAALVAAVCGI 126
Cdd:COG0559 14 LGSIYALIALGLTLIFGVMGVINFAHGEFVMLGAYVAYTLAT----------------LLGLPLWLALLLAVLVAALLGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 127 LL---------GAPTLklrgdYLAIVTLGFGEIIRilmrnldrpvnitNGAKGITGVDTLNLFGLkFSGVYHWLGFKVPA 197
Cdd:COG0559 78 LLerlvirplrGAPPL-----ALLLATIGLSLVLQ-------------GLVLLIFGADPRSFPAL-LSGSVELGGVSIPA 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 198 LWLWYYLLMLVIVAIIFVCLRlqHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFvspe 277
Cdd:COG0559 139 YRLFIIVVALVLLAALWLFLR--RTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV---- 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 278 SFTLQESIAVLAM--VVLGGMGHIPGVILGAILLTALpellrsqaapvqQALFGTVLidPEVLRQLFYGLALVLVMLVRP 355
Cdd:COG0559 213 SPTMGFLLGLKAFaaVVLGGLGSIPGAVVGGLLLGLA------------ESLGAAYL--PSGYKDVVAFVLLILVLLVRP 278
|
330
....*....|
gi 556427022 356 AGIWPVRHKE 365
Cdd:COG0559 279 QGLFGRKERE 288
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
45-358 |
4.14e-23 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 97.12 E-value: 4.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 45 IDFALLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMASphllevfpilnvwfpdGLHTSYLLIIPLAALVAAVC 124
Cdd:cd06582 2 LALGAIYALIALGLTLIFGVTGVINFAHGEFYMLGAYVAYTLLV----------------ALGLPFWLALLLALLVAALL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 125 GILLGAPTLK-LRGDYLA--IVTLGFGEIIRilmrnldrpvnitNGAKGITGVDTLNLFGLKFSGVYHWLGFKVPALWLW 201
Cdd:cd06582 66 GVLLERLVLRpLRGAPLLtlLITFGGLLILL-------------QGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLF 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 202 YYLLMLVIVAIIFvcLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGfVSPeSFTL 281
Cdd:cd06582 133 IIAVALVLLAALY--LFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITG-VSP-TMGL 208
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556427022 282 QESIAVLAMVVLGGMGHIPGVILGAILLTALpellrsqaapvqQALFGTVLidPEVLRQLFYGLALVLVMLVRPAGI 358
Cdd:cd06582 209 LLLLKAFAAVVLGGLGSIPGAVVGGLLLGLA------------ESLAAAYL--SSGYKDAVAFVLLILVLLVRPQGL 271
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-318 |
1.23e-19 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 87.33 E-value: 1.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 49 LLYIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAALMasphllevfpilnVWFPDGLHTSYLLIIPLAALVAAVCGILL 128
Cdd:cd06574 2 LIYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAIL-------------IVAGYNPWLALIAAILAGAAAGLVTGFLH 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 129 gaptLKLRGDYLaivtlgfgeIIRILMRNLDRPVNItngakGITGVDTLNLFGlKFSGVYHWLGFKVPALWLWYYLLMLV 208
Cdd:cd06574 69 ----TRLKINGL---------LAGILIMIGLYSINL-----RIMGGPNIPLGT-RDTLLGLLLLFGISGTLSIPVVLLLI 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 209 IVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVsPESFTLQESIAVL 288
Cdd:cd06574 130 VLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFA-DVNMGIGTGVIGL 208
|
250 260 270
....*....|....*....|....*....|....*...
gi 556427022 289 AMVVLGGMG--------HIPGVILGAILLTALPELLRS 318
Cdd:cd06574 209 AAVIIGGAIvgrrtikaSILGVIIGAILYRIALALALG 246
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
1-333 |
2.66e-16 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 78.61 E-value: 2.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 1 MTTLQLQTPAATRKFWSGMVLFCLALLVAPVVATQ----LGGNYWVRVIDFALLYIMLALGLNIVVgYTGLLDMGFIAFY 76
Cdd:COG1172 1 MSATTTTARSLLRRLLPELGLLLALVLLLVVFSILspgfLSPGNLSNILRQAAILGILALGMTLVI-ITGGIDLSVGSVV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 77 AVGAYLAALMASphllevfpilnvwfpdGLHTSYLLIIPLAALVAAVCGILLGAPTLKLRGDYLaIVTLGFGEIIRILMR 156
Cdd:COG1172 80 ALSGVVAALLLV----------------ALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPF-IVTLGTMFIARGLAL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 157 NLDRPVNITNGAKGITGVDTLNLFGLKFSGVYhwlgfkvpalwlwyyllmLVIVAIIFVCLrLQHSRIGRAWHAIREDED 236
Cdd:COG1172 143 LLTGGRPISGLPDAFRALGQGSLLGIPVPVLI------------------ALVVALVAWFL-LRRTRFGRYIYAVGGNEE 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 237 VARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAVLAMVV-----LGGMGHIPGVILGAILLTA 311
Cdd:COG1172 204 AARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIggtslTGGRGSVLGTLLGALILGV 283
|
330 340
....*....|....*....|....
gi 556427022 312 LPELLRSQAAP--VQQALFGTVLI 333
Cdd:COG1172 284 LNNGLNLLGVSsyWQQIVKGAIIL 307
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
51-333 |
4.95e-15 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 73.98 E-value: 4.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 51 YIMLALGLNIVVgYTGLLDMGFIAFYAVGAYLAALMASphllevfpilnvwfpdGLHTSYLLIIPLAALVAAVCGILLGA 130
Cdd:cd06579 4 LGILALGMTLVI-ITGGIDLSVGSVAALSAVVAALLLV----------------NAGLPIPLAILAALAVGALIGLLNGL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 131 PTLKLRGDYLaIVTLGFGEIIRILMrnldrpVNITNGakgiTGVDTLNLFGLKFSGVYHWLGFKVPALWlwyyllmlVIV 210
Cdd:cd06579 67 LVAYLRIPPF-IVTLGTMFILRGLA------LLITGG----RPISGLPPLFSFFLGGGLILGIPVPVLI--------ALA 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 211 AIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQEsIAVLAM 290
Cdd:cd06579 128 VALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYE-LDAIAA 206
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 556427022 291 VVLGGM------GHIPGVILGAILLTALPELLRSQAAP--VQQALFGTVLI 333
Cdd:cd06579 207 VVLGGTsltggrGSVLGTLLGALLLGVLNNGLNLLGVSsfWQQIVKGAILL 257
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
51-309 |
3.45e-10 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 60.32 E-value: 3.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 51 YIMLALGLNIVVGYTGLLDMGFIAFYAVGAYLAalmasphllevFPILNVWFPDGLHTSYLLI---IPLAALVAAVCGIL 127
Cdd:PRK10740 22 YALIAIGYTMVYGIIGMINFAHGEVYMIGSYVS-----------FMIIAALMMMGIDTSWLLVaagFVGAIVIASAYGWS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 128 LGAPTLKLRGDYLAIVTLGFGEIIRILMRNLdrpVNITNGAKGITGVDTLNlfGLKFSGVYHwlGFKVPALWLWYYLLML 207
Cdd:PRK10740 91 IERVAYRPVRNSKRLIALISAIGMSIFLQNY---VSLTEGSRDVALPSLFN--GQWVVGHSE--NFSASITTMQAVIWIV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 208 VIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPeSFTLQESIAV 287
Cdd:PRK10740 164 TFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINP-YIGFMAGMKA 242
|
250 260
....*....|....*....|..
gi 556427022 288 LAMVVLGGMGHIPGVILGAILL 309
Cdd:PRK10740 243 FTAAVLGGIGSIPGAMIGGLIL 264
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
208-312 |
1.04e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 46.28 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 208 VIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAV 287
Cdd:cd06580 101 ALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEGMSAGYGFIA 180
|
90 100
....*....|....*....|....*
gi 556427022 288 LAMVVLGGmGHIPGVILGAILLTAL 312
Cdd:cd06580 181 IAVALLGR-WNPLGILLAALLFGAL 204
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
208-316 |
2.23e-05 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 45.88 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 208 VIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAV 287
Cdd:PRK15432 166 TLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAI 245
|
90 100 110
....*....|....*....|....*....|....
gi 556427022 288 LAMV-----VLGGMGHIPGVILGAILLTALPELL 316
Cdd:PRK15432 246 AACVlggisLLGGSGTIIGAVLGAYFLTQIDSVL 279
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
105-309 |
3.09e-04 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 42.40 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 105 GLHTSYLLIIPLAALVAAVCGILLGAPTLKlrGDYLA-IVTLgfgeiiriLMRNLDRPVNI--TNGAKGITGV-DTLNLF 180
Cdd:PRK09512 91 GIEVNALVAVPAALALGAAIGAVTGVIVAK--GKVQAfIATL--------VMMLLLRGVTMvyTDGSPINTGFtDNADLF 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 181 GlkFSGVYHWLGFKVPALwlwyyllmlvIVAIIFVC--LRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGAS 258
Cdd:PRK09512 161 G--WFGIGRPLGIPTPVW----------IMAIVFLAawYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGL 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 556427022 259 FGGVAGALFGAFQGFVSPESFTLQESIAVLAMVV-----LGGMGHIPGVILGAILL 309
Cdd:PRK09512 229 LAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLggtslAGGKGRIVGTLIGALIL 284
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
105-342 |
6.26e-04 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 41.30 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 105 GLHTSYLLIIPLAALVAAVCG-ILLGAPTLKLRGDYLA-------IVTLGFGEIirilMRNLDRPVNITNGAKGITgVDT 176
Cdd:PRK09699 77 GMVTAKLMLAGVDPFLAALIGgVLVGGALGAINGCLVNwtglhpfIITLGTNAI----FRGITLVISDANSVYGFS-FDF 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 177 LNLFGLKFSGVyhwlgfKVPALWLwyyllmlVIVAIIFVCLRlQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMG 256
Cdd:PRK09699 152 VNFFAASVIGI------PVPVIFS-------LIVALILWFLT-TRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIIS 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 257 ASFGGVAGALFGAFQGFVSPESFTLQESIAVLAMVV-----LGGMGHIPGVILGAILLTALPELLRSQAAPV--QQALFG 329
Cdd:PRK09699 218 GVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIggtsfFGGKGRIFSVVIGGLIIGTINNGLNILQVQTyyQLVVMG 297
|
250
....*....|...
gi 556427022 330 TVLIDPEVLRQLF 342
Cdd:PRK09699 298 GLIIAAVALDRLI 310
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
208-273 |
7.01e-04 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 40.87 E-value: 7.01e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556427022 208 VIVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGF 273
Cdd:COG4120 141 IVLVIKLLLDWFLKTELGLALRATGDNPQMARALGINTDRMKILGLALSNGLVALSGALVAQYQGF 206
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
209-312 |
1.14e-03 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 40.49 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 209 IVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGA------FQGFVSPESFTlq 282
Cdd:COG4603 204 LLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgvqgrlTPGFSPGYGFT-- 281
|
90 100 110
....*....|....*....|....*....|
gi 556427022 283 eSIAVlAMVvlgGMGHIPGVILGAILLTAL 312
Cdd:COG4603 282 -GIAV-ALL---GRNNPLGIILAALLFGAL 306
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
209-308 |
4.76e-03 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 38.51 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 209 IVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALF-----GAF-------QGFvsp 276
Cdd:COG1079 155 LLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAYLslgyvGSFtegmtagRGF--- 231
|
90 100 110
....*....|....*....|....*....|..
gi 556427022 277 esftlqesIAVLAMVVlgGMGHIPGVILGAIL 308
Cdd:COG1079 232 --------IALAAVIF--GRWRPLGALLAALL 253
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
209-312 |
7.76e-03 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 37.74 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556427022 209 IVAIIFVCLRLQHSRIGRAWHAIREDEDVARAMGINVRNYKLLAFAMGASFGGVAGALFGAFQGFVSPESFTLQESIAVL 288
Cdd:PRK09478 191 LIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIA 270
|
90 100
....*....|....*....|....*....
gi 556427022 289 AMVV-----LGGMGHIPGVILGAILLTAL 312
Cdd:PRK09478 271 ACVVggvsfSGGVGTVIGVVTGVIIFTVI 299
|
|
| |
