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Conserved domains on  [gi|556356738|ref|WP_023300148|]
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MULTISPECIES: VF530 family DNA-binding protein [Enterobacter]

Protein Classification

COG4628 family protein( domain architecture ID 10008643)

COG4628 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4628 COG4628
Uncharacterized conserved protein, DUF2132 family [Function unknown];
6-77 3.55e-47

Uncharacterized conserved protein, DUF2132 family [Function unknown];


:

Pssm-ID: 443667  Cd Length: 74  Bit Score: 144.92  E-value: 3.55e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556356738  6 SNDPLHGVTLEMQVNALVARYGWNELGNRIKINCFRKDPSVKSSLKFLRRTPWARAEVEALYLDSLHDDGNE 77
Cdd:COG4628   3 PNNPLHGVTLEQILTELVDHYGWEELGERININCFKNNPSIKSSLKFLRKTPWAREKVEALYLYTLKRKPRA 74
 
Name Accession Description Interval E-value
COG4628 COG4628
Uncharacterized conserved protein, DUF2132 family [Function unknown];
6-77 3.55e-47

Uncharacterized conserved protein, DUF2132 family [Function unknown];


Pssm-ID: 443667  Cd Length: 74  Bit Score: 144.92  E-value: 3.55e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556356738  6 SNDPLHGVTLEMQVNALVARYGWNELGNRIKINCFRKDPSVKSSLKFLRRTPWARAEVEALYLDSLHDDGNE 77
Cdd:COG4628   3 PNNPLHGVTLEQILTELVDHYGWEELGERININCFKNNPSIKSSLKFLRKTPWAREKVEALYLYTLKRKPRA 74
VF530 pfam09905
DNA-binding protein VF530; VF530 contains a unique four-helix motif that shows some similarity ...
 6-68 6.15e-41

DNA-binding protein VF530; VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.


Pssm-ID: 430916  Cd Length: 63  Bit Score: 128.75  E-value: 6.15e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556356738   6 SNDPLHGVTLEMQVNALVARYGWNELGNRIKINCFRKDPSVKSSLKFLRRTPWARAEVEALYL 68
Cdd:pfam09905  1 PNNPLHGVTLETILTELVDHYGWEELGERINIRCFKNNPSIKSSLKFLRKTPWAREKVENLYL 63
 
Name Accession Description Interval E-value
COG4628 COG4628
Uncharacterized conserved protein, DUF2132 family [Function unknown];
6-77 3.55e-47

Uncharacterized conserved protein, DUF2132 family [Function unknown];


Pssm-ID: 443667  Cd Length: 74  Bit Score: 144.92  E-value: 3.55e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556356738  6 SNDPLHGVTLEMQVNALVARYGWNELGNRIKINCFRKDPSVKSSLKFLRRTPWARAEVEALYLDSLHDDGNE 77
Cdd:COG4628   3 PNNPLHGVTLEQILTELVDHYGWEELGERININCFKNNPSIKSSLKFLRKTPWAREKVEALYLYTLKRKPRA 74
VF530 pfam09905
DNA-binding protein VF530; VF530 contains a unique four-helix motif that shows some similarity ...
 6-68 6.15e-41

DNA-binding protein VF530; VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.


Pssm-ID: 430916  Cd Length: 63  Bit Score: 128.75  E-value: 6.15e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556356738   6 SNDPLHGVTLEMQVNALVARYGWNELGNRIKINCFRKDPSVKSSLKFLRRTPWARAEVEALYL 68
Cdd:pfam09905  1 PNNPLHGVTLETILTELVDHYGWEELGERINIRCFKNNPSIKSSLKFLRKTPWAREKVENLYL 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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