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Conserved domains on  [gi|556198130|ref|WP_023281578|]
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MULTISPECIES: DUF5405 family protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5405 super family cl38679
Domain of unknown function (DUF5405); This domain family is found in Enterobacteriaceae. This ...
 5-89 3.59e-11

Domain of unknown function (DUF5405); This domain family is found in Enterobacteriaceae. This protein may have a phage origin being found in bacteriophage P2 Swiss:Q06425. The majority of proteins have a conserved cysteine residue close to their C-terminus which may have functional significance.


The actual alignment was detected with superfamily member pfam17399:

Pssm-ID: 435895  Cd Length: 88  Bit Score: 54.14  E-value: 3.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556198130   5 IEIGERYVVTSDSFQFILHEKKrAESGKNAGQEWlAVVGYYPK----LSQLVSGLMHHDILTGSAKSFADLNVQVEQLSK 80
Cdd:pfam17399  1 INPAYNIVITNGRYDFALIQVQ-LDKRSGAQPEL-STIAVYQSpitlLNDLVHRLVCREIRRKTVTSIDELLTEAERISK 78


                 ....*....
gi 556198130  81 RCSEAFGSH 89
Cdd:pfam17399 79 LCQNAFSKL 87
 
Name Accession Description Interval E-value
DUF5405 pfam17399
Domain of unknown function (DUF5405); This domain family is found in Enterobacteriaceae. This ...
 5-89 3.59e-11

Domain of unknown function (DUF5405); This domain family is found in Enterobacteriaceae. This protein may have a phage origin being found in bacteriophage P2 Swiss:Q06425. The majority of proteins have a conserved cysteine residue close to their C-terminus which may have functional significance.


Pssm-ID: 435895  Cd Length: 88  Bit Score: 54.14  E-value: 3.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556198130   5 IEIGERYVVTSDSFQFILHEKKrAESGKNAGQEWlAVVGYYPK----LSQLVSGLMHHDILTGSAKSFADLNVQVEQLSK 80
Cdd:pfam17399  1 INPAYNIVITNGRYDFALIQVQ-LDKRSGAQPEL-STIAVYQSpitlLNDLVHRLVCREIRRKTVTSIDELLTEAERISK 78


                 ....*....
gi 556198130  81 RCSEAFGSH 89
Cdd:pfam17399 79 LCQNAFSKL 87
 
Name Accession Description Interval E-value
DUF5405 pfam17399
Domain of unknown function (DUF5405); This domain family is found in Enterobacteriaceae. This ...
 5-89 3.59e-11

Domain of unknown function (DUF5405); This domain family is found in Enterobacteriaceae. This protein may have a phage origin being found in bacteriophage P2 Swiss:Q06425. The majority of proteins have a conserved cysteine residue close to their C-terminus which may have functional significance.


Pssm-ID: 435895  Cd Length: 88  Bit Score: 54.14  E-value: 3.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556198130   5 IEIGERYVVTSDSFQFILHEKKrAESGKNAGQEWlAVVGYYPK----LSQLVSGLMHHDILTGSAKSFADLNVQVEQLSK 80
Cdd:pfam17399  1 INPAYNIVITNGRYDFALIQVQ-LDKRSGAQPEL-STIAVYQSpitlLNDLVHRLVCREIRRKTVTSIDELLTEAERISK 78


                 ....*....
gi 556198130  81 RCSEAFGSH 89
Cdd:pfam17399 79 LCQNAFSKL 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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