NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|555238352|ref|WP_023223451|]
View 

head completion/stabilization protein [Salmonella enterica]

Protein Classification

head completion/stabilization protein( domain architecture ID 10531829)

head completion/stabilization protein carries out the completion of filled heads by rendering the newly packaged DNA in filled heads resistant to DNase

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_GPL pfam05926
Phage head completion protein (GPL); This family consists of several phage head completion ...
 16-154 1.47e-58

Phage head completion protein (GPL); This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.


:

Pssm-ID: 428676  Cd Length: 139  Bit Score: 178.56  E-value: 1.47e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555238352   16 IKNTPFWPDVDLSEFRSVMRTDGTVTQPRLKQVVLTAISEVNAELYDFRKRQQTLGWQTLADVPAEMLDGKSERIRHYHN 95
Cdd:pfam05926   1 ITNDGFFPDISLADFREAMRLDGTVTPARLRAALVEAIAEVNDELAAWRARQQAAGFATLAAVPAPQIDGESVLVARYRR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 555238352   96 AVFCWARAVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCMVELI 154
Cdd:pfam05926  81 AVYARAKADLIERYRDIDTTASGENKAEELETTIDDLRRDARWAIRDILGRPRGTVELI 139
 
Name Accession Description Interval E-value
Phage_GPL pfam05926
Phage head completion protein (GPL); This family consists of several phage head completion ...
 16-154 1.47e-58

Phage head completion protein (GPL); This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.


Pssm-ID: 428676  Cd Length: 139  Bit Score: 178.56  E-value: 1.47e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555238352   16 IKNTPFWPDVDLSEFRSVMRTDGTVTQPRLKQVVLTAISEVNAELYDFRKRQQTLGWQTLADVPAEMLDGKSERIRHYHN 95
Cdd:pfam05926   1 ITNDGFFPDISLADFREAMRLDGTVTPARLRAALVEAIAEVNDELAAWRARQQAAGFATLAAVPAPQIDGESVLVARYRR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 555238352   96 AVFCWARAVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCMVELI 154
Cdd:pfam05926  81 AVYARAKADLIERYRDIDTTASGENKAEELETTIDDLRRDARWAIRDILGRPRGTVELI 139
 
Name Accession Description Interval E-value
Phage_GPL pfam05926
Phage head completion protein (GPL); This family consists of several phage head completion ...
 16-154 1.47e-58

Phage head completion protein (GPL); This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.


Pssm-ID: 428676  Cd Length: 139  Bit Score: 178.56  E-value: 1.47e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555238352   16 IKNTPFWPDVDLSEFRSVMRTDGTVTQPRLKQVVLTAISEVNAELYDFRKRQQTLGWQTLADVPAEMLDGKSERIRHYHN 95
Cdd:pfam05926   1 ITNDGFFPDISLADFREAMRLDGTVTPARLRAALVEAIAEVNDELAAWRARQQAAGFATLAAVPAPQIDGESVLVARYRR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 555238352   96 AVFCWARAVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDAPHCMVELI 154
Cdd:pfam05926  81 AVYARAKADLIERYRDIDTTASGENKAEELETTIDDLRRDARWAIRDILGRPRGTVELI 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH