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Conserved domains on  [gi|553851173|ref|WP_023137646|]
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MULTISPECIES: hypothetical protein [Salmonella]

Protein Classification

winged helix-turn-helix domain-containing protein( domain architecture ID 10007860)

winged helix-turn-helix (wHTH) domain-containing protein binds DNA and may function as a transcriptional regulator

CATH:  1.10.10.10
Gene Ontology:  GO:0003677
PubMed:  10473770|8831795|15808743
SCOP:  3000034

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CadC1 COG3710
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
11-107 1.99e-15

DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];


:

Pssm-ID: 442924 [Multi-domain]  Cd Length: 106  Bit Score: 69.93  E-value: 1.99e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553851173  11 RVVFDSTKMTLSHGNEIIRVSEAETHLLLAFWHG---LYKKEDIIHFVWENRggCVSESSYYKLINQMRNDFSSIGLQSS 87
Cdd:COG3710    7 DFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHpgrVVSRDELLAAVWPGR--VVSDNSLTQAISRLRKALGDDGLEPR 84

                         90       100
                 ....*....|....*....|
gi 553851173  88 DIVTRPRVGVSLSVTIEPIK 107
Cdd:COG3710   85 LIRTVPRRGYRLVAPVEVEA 104
 
Name Accession Description Interval E-value
CadC1 COG3710
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
11-107 1.99e-15

DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];


Pssm-ID: 442924 [Multi-domain]  Cd Length: 106  Bit Score: 69.93  E-value: 1.99e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553851173  11 RVVFDSTKMTLSHGNEIIRVSEAETHLLLAFWHG---LYKKEDIIHFVWENRggCVSESSYYKLINQMRNDFSSIGLQSS 87
Cdd:COG3710    7 DFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHpgrVVSRDELLAAVWPGR--VVSDNSLTQAISRLRKALGDDGLEPR 84

                         90       100
                 ....*....|....*....|
gi 553851173  88 DIVTRPRVGVSLSVTIEPIK 107
Cdd:COG3710   85 LIRTVPRRGYRLVAPVEVEA 104
 
Name Accession Description Interval E-value
CadC1 COG3710
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
11-107 1.99e-15

DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];


Pssm-ID: 442924 [Multi-domain]  Cd Length: 106  Bit Score: 69.93  E-value: 1.99e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553851173  11 RVVFDSTKMTLSHGNEIIRVSEAETHLLLAFWHG---LYKKEDIIHFVWENRggCVSESSYYKLINQMRNDFSSIGLQSS 87
Cdd:COG3710    7 DFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHpgrVVSRDELLAAVWPGR--VVSDNSLTQAISRLRKALGDDGLEPR 84

                         90       100
                 ....*....|....*....|
gi 553851173  88 DIVTRPRVGVSLSVTIEPIK 107
Cdd:COG3710   85 LIRTVPRRGYRLVAPVEVEA 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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