|
Name |
Accession |
Description |
Interval |
E-value |
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
92-399 |
2.54e-85 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 262.92 E-value: 2.54e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 92 GLRDLGEGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAQLLVGLTRAQLLINRGDYP 171
Cdd:COG3071 23 GLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLLDQGQAE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 172 QARNTLEELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRKERVLKDSELRDLERRAWVASLQEAGERglnegeta 251
Cdd:COG3071 103 QALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQAARD-------- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 252 LQPLTQRWQNVPSALRADPAIVAGHAAQLLRLGAEEEAEEVLRHALKQGFDATLVQLYGQVRGRDPGKQLQAAEGWLKEH 331
Cdd:COG3071 175 AEALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQGGDPAKQLKRAEKWLKKH 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 553753964 332 PNDPGLLLTLGRLCLINKLWGKAREYLEASLSFQRSAETCAELGRLLAQLGEVERSNQLFQEGLVLLD 399
Cdd:COG3071 255 PNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
21-394 |
4.87e-82 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 256.06 E-value: 4.87e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 21 AISEQAGYVLIAYKSFRYESSLWSFLALLAVVWLLVVLVRLVLRLLGSSGRVVNPWSRYNRRRRVQMAEHSGLRDLGEGN 100
Cdd:TIGR00540 1 ALAGNTGYVLIVYPPYRIELSLNFFVLLLVLLFVVLYILLRLIRRVFRLPRRVRAWRSRRKQRRAQQATREGLIALFEGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 101 WPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAQLLVGLTRAQLLINRGDYPQARNTLEEL 180
Cdd:TIGR00540 81 YSQAEKKATKAAEHSENPLLAYLLAARAAQQMGDEERRDRYLAEAAELAPNSELAVLLTRAELLLDQRDYEAALAALDSL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 181 HGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRKERVLKDSELRDLERRAWVASLQEAGERGlnegetaLQPLTQRWQ 260
Cdd:TIGR00540 161 QAQAPRHTAVLRLALRAYQRSGNWDALLKLLPALRKAKALSPEEAARLEQQAYIGLLDEAREED-------ADALKTWWK 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 261 NVPSALRADPAIVAGHAAQLLRLGAEEEAEEVLRHALKQGFDATLVQLYGQVRGRDPGKQLQAAEGWLKEHPNDPGLLLT 340
Cdd:TIGR00540 234 QLPRAERQEPELAVAAAEALIQLGDHDEAEKLIEEALKKEWDPELLRLYGRLQPGDPSPLIKRAEKWLKKHPDDALLLLA 313
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 553753964 341 LGRLCLINKLWGKAREYLEASLSFQRSAETCAELGRLLAQLGEVERSNQLFQEG 394
Cdd:TIGR00540 314 LGRLCLRQQLWGKAQSYLEASLSLAPTEEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| PRK10747 |
PRK10747 |
putative protoheme IX biogenesis protein; Provisional |
81-403 |
1.10e-28 |
|
putative protoheme IX biogenesis protein; Provisional
Pssm-ID: 182695 [Multi-domain] Cd Length: 398 Bit Score: 115.96 E-value: 1.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 81 RRRRVQMAEHSGLRDLGEGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAQLLVGLTR 160
Cdd:PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 161 AQLLINRGDYPQARNTLEELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRKERVLKDSELRDLERRAWVASLQEA 240
Cdd:PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 241 GERGLNEGetalqpLTQRWQNVPSALRADPAIVAGHAAQLLRLGAEEEAEEVLRHALKQGFDATLVQLYGQVRGRDPGKQ 320
Cdd:PRK10747 240 MADQGSEG------LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 321 LQAAEGWLKEHPNDPGLLLTLGRLCLINKLWGKAREYLEASLSFQRSAETCAELGRLLAQLGEVERSNQLFQEGLVLLDR 400
Cdd:PRK10747 314 EKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393
|
...
gi 553753964 401 RTP 403
Cdd:PRK10747 394 NNP 396
|
|
| HemY_N |
pfam07219 |
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of ... |
30-132 |
1.09e-14 |
|
HemY protein N-terminus; This family represents the N-terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. This is a membrane protein involved in a late step of protoheme IX synthesis.
Pssm-ID: 429353 [Multi-domain] Cd Length: 104 Bit Score: 69.46 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 30 LIAYKSFRYESSLWSFLALLAVVWLLVVLVRLVLRLLGSSGRVVNPWSRYNRRRRVQMAEHSGLRDLGEGNWPQALRHLR 109
Cdd:pfam07219 1 LIVWGGYRIETSLWVAVLLLVLLFVLLYLLLRLLRLLLRLPGRVRRWRRRRRRRKARKALSEGLIALAEGDWAQAEKLAA 80
|
90 100
....*....|....*....|...
gi 553753964 110 RAAEMGERPLMHYLGAARAANEL 132
Cdd:pfam07219 81 KAAKLLDAPLLNYLLAARAAQLQ 103
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
76-389 |
5.36e-11 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 64.14 E-value: 5.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 76 WSRY---NRRRRVQMAEHSGLRDLGEGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDA 152
Cdd:COG3898 72 LSRYfrrRRRRKGYQALSRGLIAVAAGDGRLARRKAAKAERLLDRPPLTLLLEAQAAQLAGDREAARRAFEAMLEDPETR 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 153 QL-LVGLtrAQLLINRGDYPQARNTLEELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRKERVLKDSELRdlERR 231
Cdd:COG3898 152 FLgLRGL--MVEALRRGDTEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALKAGLLDKDVAR--RRR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 232 AwVASLQEAGERGLNEGETALQPLTQrwqnvpsALRADPAIV--AGHAAQLL-RLGAEEEAEEVLRHALKQGFDATLVQL 308
Cdd:COG3898 228 A-VLLTARARELEEGDPDEARELAIE-------ALKLAPDLVpaAVLAARLLiAQGKLRKAAKVLEKAWRAQPHPDLAAA 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 309 YGQVR-GRDPGKQLQAAEGWLKEHPNDPGLLLTLGRLCLINKLWGKAREYLEASLSFQRSAETCaelgRLLAQLGEVERS 387
Cdd:COG3898 300 YAELRpGDSALDRLKRAETLAALNPDHPESRLALAEAALAAGDFGEARRALGPLLEERPTARVC----LLMAEIERGEHG 375
|
..
gi 553753964 388 NQ 389
Cdd:COG3898 376 DD 377
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
99-395 |
1.56e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.18 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDaQLLVGLTRAQLLINRGDYPQARNTLE 178
Cdd:TIGR02917 207 GNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQ 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 179 ELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLpelrkERVLKDSELRDLERRAWVASLQEAGERGlnEGETALQPLTQR 258
Cdd:TIGR02917 286 DALKSAPEYLPALLLAGASEYQLGNLEQAYQYL-----NQILKYAPNSHQARRLLASIQLRLGRVD--EAIATLSPALGL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 259 WQNVPSALRA------------------------DPAIVAGHAAQ-LLRL--GAEEEAEEVLRHALK---QGFDATLVQL 308
Cdd:TIGR02917 359 DPDDPAALSLlgeaylalgdfekaaeylakatelDPENAAARTQLgISKLsqGDPSEAIADLETAAQldpELGRADLLLI 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 309 YGQVRGRDPGKQLQAAEGWLKEHPNDPGLLLTLGRLCLINKLWGKAREYLEASLSFQR-SAETCAELGRLLAQLGEVERS 387
Cdd:TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPdFFPAAANLARIDIQEGNPDDA 518
|
....*...
gi 553753964 388 NQLFQEGL 395
Cdd:TIGR02917 519 IQRFEKVL 526
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
98-207 |
1.62e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.20 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 98 EGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAqLLVGLTRAQLLINRGDYPQARNTL 177
Cdd:COG2956 123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC-ARALLLLAELYLEQGDYEEAIAAL 201
|
90 100 110
....*....|....*....|....*....|
gi 553753964 178 EELHGLQPQHRTVLRLMQQLYVTQHDWQAL 207
Cdd:COG2956 202 ERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
70-216 |
6.25e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.61 E-value: 6.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 70 GRVVNPWSRYNRRRRVQMAEHSGLRDLGE-----GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNR 144
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNlllalGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 553753964 145 AREREPD-AQLLVGLtrAQLLINRGDYPQARNTLEELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRK 216
Cdd:COG3914 172 ALELDPDnAEALNNL--GNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAA 242
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
99-299 |
6.68e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 6.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPD-AQLLVGLtrAQLLINRGDYPQARNTL 177
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnAHAYCEL--AELYLEQGDYDEAIEAL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 178 EELHGLQPQHRTVLRLMQQLYVTQHDWQALcvllpelrkERVLKDSELRDLERRAWVASLQEAGERgLNEGETALQPLTQ 257
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEA---------IAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRK 237
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 553753964 258 RWQNVPSalradPAIVAGHAAQLLRLGAEEEAEEVLRHALKQ 299
Cdd:COG2956 238 ALELDPS-----DDLLLALADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
92-362 |
4.53e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.88 E-value: 4.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 92 GLRDLGEGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPD-AQLLVGLtrAQLLINRGDY 170
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLEL--AQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 171 PQARNTLEELHGLQPQHRTVLRLMQQLYVTQHDWQAlcvLLPELRKERVLKDSELRDLERRAWVASLQeagerglNEGET 250
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK---AIEVLERLLKLGPENAHAYCELAELYLEQ-------GDYDE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 251 ALQPLTQrwqnvpsALRADPAIVAGHAAQ---LLRLGAEEEAEEVLRHALKQGFDAT-----LVQLYGQVrgRDPGKQLQ 322
Cdd:COG2956 163 AIEALEK-------ALKLDPDCARALLLLaelYLEQGDYEEAIAALERALEQDPDYLpalprLAELYEKL--GDPEEALE 233
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 553753964 323 AAEGWLKEHPNDPGLLLTLGRLCLINKlWGKAREYLEASL 362
Cdd:COG2956 234 LLRKALELDPSDDLLLALADLLERKEG-LEAALALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
98-206 |
4.95e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 98 EGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAQLLVgLTRAQLLINRGDYPQARNTL 177
Cdd:COG4783 17 AGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR-LNLGLALLKAGDYDEALALL 95
|
90 100
....*....|....*....|....*....
gi 553753964 178 EELHGLQPQHRTVLRLMQQLYVTQHDWQA 206
Cdd:COG4783 96 EKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
103-206 |
5.34e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 103 QALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPD-AQLLVGLtrAQLLINRGDYPQARNTLEELH 181
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDL--AEALLAAGDTEEAEELLERAL 78
|
90 100
....*....|....*....|....*
gi 553753964 182 GLQPQHRTVLRLMQQLYVTQHDWQA 206
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAE 103
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
99-291 |
1.86e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.77 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREP-DAQLLVGLtrAQLLINRGDYPQARNTL 177
Cdd:COG0457 56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPdDAEALYNL--GLALLELGRYDEAIEAY 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 178 EELHGLQPQHRTVLRLMQQLYVTQHDWQAlcvLLPELRKERVLKDSELRDLERRAWVASLQEAGERGLNEGETALQPLTQ 257
Cdd:COG0457 134 ERALELDPDDADALYNLGIALEKLGRYEE---ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
|
170 180 190
....*....|....*....|....*....|....
gi 553753964 258 RWQNVPSALRADPAIVAGHAAQLLRLGAEEEAEE 291
Cdd:COG0457 211 LAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
96-217 |
5.15e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 44.72 E-value: 5.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 96 LGEGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAqLLVGLTRAQLLINRGDYPQARN 175
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY-LPALPRLAELYEKLGDPEEALE 233
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 553753964 176 TLEELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRKE 217
Cdd:COG2956 234 LLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
99-328 |
8.30e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.84 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREP-DAQLLVGLtrAQLLINRGDYPQARNTL 177
Cdd:COG0457 22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPdDAEALNNL--GLALQALGRYEEALEDY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 178 EELHGLQPQHRTVLRLMQQLYVTQHDWQAlcvLLPELRKERVLKDSELRDLERRAWVAslqeageRGLNEGETALQPLTQ 257
Cdd:COG0457 100 DKALELDPDDAEALYNLGLALLELGRYDE---AIEAYERALELDPDDADALYNLGIAL-------EKLGRYEEALELLEK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 553753964 258 RWQNVPSALRADPAIVAGHAAQLLRLGAEEEAEEVLRHALKQGFDATLVQLYGQVRGRDPGKQLQAAEGWL 328
Cdd:COG0457 170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
99-197 |
1.99e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAQLLVGLtRAQLLINRGDYPQARNTLE 178
Cdd:COG4235 31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL-LGLAAFQQGDYAEAIAAWQ 109
|
90
....*....|....*....
gi 553753964 179 ELHGLQPQHRTVLRLMQQL 197
Cdd:COG4235 110 KLLALLPADAPARLLEASI 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
99-334 |
2.58e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDA-QLLVGLTRAQLLinRGDYPQARNTL 177
Cdd:TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSpEAWLMLGRAQLA--AGDLNKAVSSF 624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 178 EELHGLQPQHRTVLRLMQQLYVTQHDWQALcvlLPELRKERVLKdSELRDLERRAWVASLQEagerglNEGETALQPLTQ 257
Cdd:TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKA---ITSLKRALELK-PDNTEAQIGLAQLLLAA------KRTESAKKIAKS 694
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 553753964 258 RWQNVPSAlradPAIVAGHAAQLLRLGAEEEAEEVLRHALK-QGFDATLVQLYG-QVRGRDPGKQLQAAEGWLKEHPND 334
Cdd:TIGR02917 695 LQKQHPKA----ALGFELEGDLYLRQKDYPAAIQAYRKALKrAPSSQNAIKLHRaLLASGNTAEAVKTLEAWLKTHPND 769
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
99-187 |
4.27e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDaQLLVGLTRAQLLINRGDYPQARNTLE 178
Cdd:COG4783 52 GDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE-HPEAYLRLARAYRALGRPDEAIAALE 130
|
....*....
gi 553753964 179 ELHGLQPQH 187
Cdd:COG4783 131 KALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
99-185 |
6.92e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 6.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 99 GNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDlLNRAREREPDaQLLVGLTRAQLLINRGDYPQARNTLE 178
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN-NAEALLNLAELLLELGDYDEALAYLE 83
|
....*..
gi 553753964 179 ELHGLQP 185
Cdd:COG3063 84 RALELDP 90
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
133-197 |
1.48e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 1.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 553753964 133 ERYDEADDLLNRAREREPD-AQLLVGLtrAQLLINRGDYPQARNTLEELHGLQPQHRTVLRLMQQL 197
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDnAEARLGL--AEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
122-206 |
2.80e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.86 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 122 YLGAARAANELERYDEADDLLNRAREREPDaQLLVGLTRAQLLINRGDYPQARNTLEELHGLQPQHRTVLRLMQQLYVTQ 201
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
....*
gi 553753964 202 HDWQA 206
Cdd:COG4783 86 GDYDE 90
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
193-397 |
4.30e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 39.21 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 193 LMQQLYVTQHDWQALCVLLPELRKERVLKDSELRDLERRAWVASLQEAgerglnEGETALQPLTQRWQNVPSALRADPAI 272
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEA------AAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 273 VAGHAAQLLRLGAEEEAEEVLRHALKQGFDATLVQLY-GQV--RGRDPGKQLQAAEGWLKEHPNDPGLLLTLGRLCLINK 349
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNlGNLllALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 553753964 350 LWGKAREYLEASLSFQ-RSAETCAELGRLLAQLGEVERSNQLFQEGLVL 397
Cdd:COG3914 161 RLEEAIAALRRALELDpDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
96-217 |
5.02e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 38.32 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 553753964 96 LGEGNWPQALRHLRRAAE--MGERP-LMhyLGAARAANELERYDEADDLLNRAREREP-----DAQLLVGLTRAQLlinr 167
Cdd:COG4700 100 LELGRYDEAIELYEEALTgiFADDPhIL--LGLAQALFELGRYAEALETLEKLIAKNPdfkssDAHLLYARALEAL---- 173
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 553753964 168 GDYPQARNTLEELHGLQPQHRTVLRLmQQLYVTQHDWQALCVLLPELRKE 217
Cdd:COG4700 174 GDLEAAEAELEALARRYSGPEARYRY-AKFLARQGRTAEAKELLEEILDE 222
|
|
|