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Conserved domains on  [gi|551316408|ref|WP_022936214|]
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helix-turn-helix domain-containing protein, partial [Metamycoplasma orale]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10608550)

helix-turn-helix domain-containing protein binds DNA

CATH:  1.10.10.10
Gene Ontology:  GO:0003677

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
27-79 1.04e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


:

Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 34.10  E-value: 1.04e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 551316408  27 QKIKIVELYLQDFSILEISKIMKNSYSACYSVIEKYKKFGYNsfAMEKKKGRK 79
Cdd:pfam13518  1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRRYREGGLE--GLLPRRRRP 51
 
Name Accession Description Interval E-value
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
27-79 1.04e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 34.10  E-value: 1.04e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 551316408  27 QKIKIVELYLQDFSILEISKIMKNSYSACYSVIEKYKKFGYNsfAMEKKKGRK 79
Cdd:pfam13518  1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRRYREGGLE--GLLPRRRRP 51
 
Name Accession Description Interval E-value
HTH_28 pfam13518
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ...
27-79 1.04e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.


Pssm-ID: 463908 [Multi-domain]  Cd Length: 52  Bit Score: 34.10  E-value: 1.04e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 551316408  27 QKIKIVELYLQDFSILEISKIMKNSYSACYSVIEKYKKFGYNsfAMEKKKGRK 79
Cdd:pfam13518  1 ERLKIVLLALEGESIKEAARLFGISRSTVYRWIRRYREGGLE--GLLPRRRRP 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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