|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10459 |
PRK10459 |
MOP flippase family protein; |
1-492 |
0e+00 |
|
MOP flippase family protein;
Pssm-ID: 236697 [Multi-domain] Cd Length: 492 Bit Score: 702.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 1 MSLREKTISGAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTL 80
Cdd:PRK10459 1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 81 YWLNVGLGIFVFVLVFLLSDVIAGVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV 160
Cdd:PRK10459 81 YWLNVGLGIVVFVLVFLLSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 161 VSAHFWPLAMTAILGYLVNSAVRTLLFGFFGRKIYRPGLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGA 240
Cdd:PRK10459 161 VSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 241 SVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFGEKW 320
Cdd:PRK10459 241 EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 321 NSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMAGAIGVTLGFLLVQIVNTVLSYF 400
Cdd:PRK10459 321 NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYF 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 401 VMIKPVLGSSYRQYILSLWLPFYLSLPTLAVSYGLGVVLNGHLPLAALLAVQVAAGALAFGVMIVLSRNALVVEIKRQFC 480
Cdd:PRK10459 401 LMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGHLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVKRQFC 480
|
490
....*....|..
gi 550733428 481 RNEKMKTLLRAG 492
Cdd:PRK10459 481 RSEKMKKLLRVG 492
|
|
| MATE_tuaB_like |
cd13127 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
7-415 |
5.10e-114 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240532 [Multi-domain] Cd Length: 406 Bit Score: 342.16 E-value: 5.10e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 7 TISGAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVG 86
Cdd:cd13127 1 AVSGAFWSAISQVVVQLLQFVVTIILARLLTPEDFGLVAMATVFIAFAQLFSDLGLSSALIQRKDLTEEDLSTVFWLNLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 87 LGIFVFVLVFLLSDVIAGVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFW 166
Cdd:cd13127 81 LGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLSLSFLLSGLGSVPRALLQRELRFKKLAIIELISTLVSGVVAIVLALLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 167 PLAMTAILGYLVNSAVRTLLFGFFGRkiYRPGLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGASVAGGY 246
Cdd:cd13127 161 FGVWALVAQQLVGALVSTVLLWILSR--WRPRLSFSLASLKELLSFGSKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 247 NLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFGEKWNSIIPI 326
Cdd:cd13127 239 SRAYRLALLPVQNITGPITRVLFPALSRLQDDPERLRRAYLKALRLLALITFPLMVGLALLAEPLVLLLLGEKWLPAVPI 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 327 LQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMaGAIGVTLGFLLVQIVNTVLSYFVMIKPV 406
Cdd:cd13127 319 LQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY-GIIGVAIAYVIASLLSFPLNLYLAGRLI 397
|
....*....
gi 550733428 407 LGSSYRQYI 415
Cdd:cd13127 398 GISLLELLR 406
|
|
| Polysacc_synt_3 |
pfam13440 |
Polysaccharide biosynthesis protein; |
31-325 |
2.36e-62 |
|
Polysaccharide biosynthesis protein;
Pssm-ID: 404342 [Multi-domain] Cd Length: 293 Bit Score: 205.13 E-value: 2.36e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 31 VLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIFVFVLVFLLSDVIAGVLHNPD 110
Cdd:pfam13440 1 VLARLLSPEDFGVVAIATVVISFANIFVDMGFSSALIQKKDITETDYSTVFTFNLIFGALIYLILFALAPLIASFYNQPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 111 LAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWPLAMTAILGYLVNSAVRTLLFGFF 190
Cdd:pfam13440 81 LVPVLRVLALVLILNGLSSVQTALLRRDLRFKKLFKITLTSSVIGGIVGIVLAYLGFGVWALVIGTLAQQLLSLVLLWLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 191 GRkiYRPGLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGASVAGGYNLAYNVAVVPPMKLNPIITRVLFP 270
Cdd:pfam13440 161 SD--WRPRLTFSLKVIKELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLALLPTANITSVITKVLFP 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 550733428 271 AFAKIQDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFGEKWNSIIP 325
Cdd:pfam13440 239 ALSRIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWLESVP 293
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
4-399 |
1.34e-35 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 135.85 E-value: 1.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 4 REKTISGAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQ-----RKEISHLELT 78
Cdd:COG2244 1 LKKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRfiaeyREEELRRLLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 79 TLYWLNVGLGIFVFVLVFLLSDVIAGVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTF 158
Cdd:COG2244 81 TALLLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 159 TVVSAHFWPLAMTAILgylvnsavrtllfgffgrkiyrpglhfslasvssnlRFGAWLTADSIINYVNTNLSTLVLARIL 238
Cdd:COG2244 161 ALLLALLGLGLWGLVL------------------------------------KYSLPLLLSGLLGLLLTNLDRLLLGALL 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 239 GASVAGGYNLAYNVAVVPpMKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVF 316
Cdd:COG2244 205 GPAAVGIYSAAYRLASLL-LLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLLF 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 317 GEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMAGAIGVTLGFLLVQIVNTV 396
Cdd:COG2244 284 GPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLVLLL 363
|
...
gi 550733428 397 LSY 399
Cdd:COG2244 364 LLL 366
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10459 |
PRK10459 |
MOP flippase family protein; |
1-492 |
0e+00 |
|
MOP flippase family protein;
Pssm-ID: 236697 [Multi-domain] Cd Length: 492 Bit Score: 702.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 1 MSLREKTISGAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTL 80
Cdd:PRK10459 1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 81 YWLNVGLGIFVFVLVFLLSDVIAGVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV 160
Cdd:PRK10459 81 YWLNVGLGIVVFVLVFLLSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 161 VSAHFWPLAMTAILGYLVNSAVRTLLFGFFGRKIYRPGLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGA 240
Cdd:PRK10459 161 VSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 241 SVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFGEKW 320
Cdd:PRK10459 241 EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 321 NSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMAGAIGVTLGFLLVQIVNTVLSYF 400
Cdd:PRK10459 321 NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYF 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 401 VMIKPVLGSSYRQYILSLWLPFYLSLPTLAVSYGLGVVLNGHLPLAALLAVQVAAGALAFGVMIVLSRNALVVEIKRQFC 480
Cdd:PRK10459 401 LMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGHLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVKRQFC 480
|
490
....*....|..
gi 550733428 481 RNEKMKTLLRAG 492
Cdd:PRK10459 481 RSEKMKKLLRVG 492
|
|
| MATE_tuaB_like |
cd13127 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
7-415 |
5.10e-114 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240532 [Multi-domain] Cd Length: 406 Bit Score: 342.16 E-value: 5.10e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 7 TISGAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVG 86
Cdd:cd13127 1 AVSGAFWSAISQVVVQLLQFVVTIILARLLTPEDFGLVAMATVFIAFAQLFSDLGLSSALIQRKDLTEEDLSTVFWLNLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 87 LGIFVFVLVFLLSDVIAGVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFW 166
Cdd:cd13127 81 LGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLSLSFLLSGLGSVPRALLQRELRFKKLAIIELISTLVSGVVAIVLALLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 167 PLAMTAILGYLVNSAVRTLLFGFFGRkiYRPGLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGASVAGGY 246
Cdd:cd13127 161 FGVWALVAQQLVGALVSTVLLWILSR--WRPRLSFSLASLKELLSFGSKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 247 NLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFGEKWNSIIPI 326
Cdd:cd13127 239 SRAYRLALLPVQNITGPITRVLFPALSRLQDDPERLRRAYLKALRLLALITFPLMVGLALLAEPLVLLLLGEKWLPAVPI 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 327 LQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMaGAIGVTLGFLLVQIVNTVLSYFVMIKPV 406
Cdd:cd13127 319 LQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY-GIIGVAIAYVIASLLSFPLNLYLAGRLI 397
|
....*....
gi 550733428 407 LGSSYRQYI 415
Cdd:cd13127 398 GISLLELLR 406
|
|
| Polysacc_synt_3 |
pfam13440 |
Polysaccharide biosynthesis protein; |
31-325 |
2.36e-62 |
|
Polysaccharide biosynthesis protein;
Pssm-ID: 404342 [Multi-domain] Cd Length: 293 Bit Score: 205.13 E-value: 2.36e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 31 VLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIFVFVLVFLLSDVIAGVLHNPD 110
Cdd:pfam13440 1 VLARLLSPEDFGVVAIATVVISFANIFVDMGFSSALIQKKDITETDYSTVFTFNLIFGALIYLILFALAPLIASFYNQPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 111 LAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWPLAMTAILGYLVNSAVRTLLFGFF 190
Cdd:pfam13440 81 LVPVLRVLALVLILNGLSSVQTALLRRDLRFKKLFKITLTSSVIGGIVGIVLAYLGFGVWALVIGTLAQQLLSLVLLWLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 191 GRkiYRPGLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGASVAGGYNLAYNVAVVPPMKLNPIITRVLFP 270
Cdd:pfam13440 161 SD--WRPRLTFSLKVIKELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLALLPTANITSVITKVLFP 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 550733428 271 AFAKIQDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFGEKWNSIIP 325
Cdd:pfam13440 239 ALSRIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWLESVP 293
|
|
| Polysacc_synt |
pfam01943 |
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ... |
10-276 |
9.17e-52 |
|
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Pssm-ID: 426523 [Multi-domain] Cd Length: 274 Bit Score: 176.72 E-value: 9.17e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 10 GAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHL--ELTTLYWLNVGL 87
Cdd:pfam01943 4 NVIVLLLSQLITYLLAFVTLPYLARILGPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYREkyELVSLYWLNALL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 88 GIFVFVLVFLLSDVIAGVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWP 167
Cdd:pfam01943 84 VKLVLVLLFLLLPLIAAFLGLPELAVLYRILALMFLLLPGVVQFRRGLFQGLERMKYALISQIVESLSRVILVFIAVFLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 168 LAMTAILGYLVNSAVRTLLFGF-FGRKIYRPGLHF-SLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGASVAGG 245
Cdd:pfam01943 164 GDIVAALLYQVLAALVGGIIALaVLRKIFRPRFVFpSLKLVRKLLSFGAPLFISSLAISLYTYIDSILLGLLLGAGAVGI 243
|
250 260 270
....*....|....*....|....*....|.
gi 550733428 246 YNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ 276
Cdd:pfam01943 244 YNAAYQLLVAIQGLLNPIVTAVLFPVFSKLQ 274
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
4-399 |
1.34e-35 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 135.85 E-value: 1.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 4 REKTISGAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQ-----RKEISHLELT 78
Cdd:COG2244 1 LKKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRfiaeyREEELRRLLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 79 TLYWLNVGLGIFVFVLVFLLSDVIAGVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTF 158
Cdd:COG2244 81 TALLLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 159 TVVSAHFWPLAMTAILgylvnsavrtllfgffgrkiyrpglhfslasvssnlRFGAWLTADSIINYVNTNLSTLVLARIL 238
Cdd:COG2244 161 ALLLALLGLGLWGLVL------------------------------------KYSLPLLLSGLLGLLLTNLDRLLLGALL 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 239 GASVAGGYNLAYNVAVVPpMKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVF 316
Cdd:COG2244 205 GPAAVGIYSAAYRLASLL-LLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLLF 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 317 GEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMAGAIGVTLGFLLVQIVNTV 396
Cdd:COG2244 284 GPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLVLLL 363
|
...
gi 550733428 397 LSY 399
Cdd:COG2244 364 LLL 366
|
|
| MATE_Wzx_like |
cd13128 |
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
13-403 |
5.78e-29 |
|
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240533 [Multi-domain] Cd Length: 402 Bit Score: 118.03 E-value: 5.78e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 13 WSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQ-----RKEISHLELTTLYWLNVGL 87
Cdd:cd13128 7 WLFVGNIISKLLGFLVRVYLARYLGPEGFGILSLALAFVGLFSIFADLGLPTALVReiaryRKEKIREIISTSLVLKLIL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 88 GIFVFVLVFLLSDVIAGvlHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWP 167
Cdd:cd13128 87 GILALLLLFLFAFLIAF--YDPELVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLGG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 168 LAMTAILGYLVNSAVRTLLFGFFGRKIYRP--GLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGASVAGG 245
Cdd:cd13128 165 GLIGFALAYLIASVLSAILLLYIYRKKILLpkFFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIMLGYFLGDAAVGI 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 246 YNLAYNVAVVPPMKLNPIiTRVLFPAFAK-IQDDTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFGEKWNSII 324
Cdd:cd13128 245 YNAAYRIAELLLFIPSAI-STALFPRISElYKNDKDELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLPAA 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 325 PILQLLCVVGLLRSVGNPIGSLLMAKARVDISFK-------FNVFKTFLFIPAIivgghmaGAIGVTLGFLLVQIVNTVL 397
Cdd:cd13128 324 LVLQILAWGFLFIFLNGIFGSILQAIGKQKLTLKilligalLNVILNLLLIPKY-------GIIGAAIATLISEFIIFIL 396
|
....*.
gi 550733428 398 SYFVMI 403
Cdd:cd13128 397 LLYLLK 402
|
|
| MATE_epsE_like |
cd13129 |
Multidrug and toxic compound extrusion family and similar proteins; This model represents a ... |
9-403 |
6.11e-13 |
|
Multidrug and toxic compound extrusion family and similar proteins; This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins, including Ralstonia solanaceraum GMI1000 epsE, which may be involved in exporting exopolysaccharide EPS I, a virulence factor. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240534 [Multi-domain] Cd Length: 411 Bit Score: 70.21 E-value: 6.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 9 SGAKWSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIanSIIQRKEISHLE----------LT 78
Cdd:cd13129 4 SGSFWSLGGLVASRGAVFLTNIMVARSLGKHVFGEFGVIQVTIGLLGTFAGFGL--GLAATKVIAETKdvdperagriIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 79 TLYWLNVGLGIFVFVLVFLLSDVIA-GVLHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFT 157
Cdd:cd13129 82 LSILLAVVTGALAATVLFLSATWIAiATLNAPHLAELLRIAAIILILTAFTGAQTGFLSGFEAFRAIARVNIWAGLLLLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 158 FTVVSAHFWPLaMTAILGYLVNSAVRTLLFGFFGRKIY----------------RPGLHFSLASVSSNlrfgawltadSI 221
Cdd:cd13129 162 LMWIGVYIRGL-VGAVVILLASAAGNVASNSLILRRECqnqrgpvrtgltwqelRVLFKFSLPSVLSG----------SM 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 222 INYVNTNLSTLVLARILGASVAGGYNLAYNVAVVpPMKLNPIITRVLFPAFAKIQDDTE-KLRVNFYKLLSVVGIINFPV 300
Cdd:cd13129 231 GSPVHWIALAILVNQPNGYAELGLFNAANQWRQF-ITFLPATLGNVALPFLAENFGNNEgMFRQTFRSALLFGLGLSLPL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 301 LLgLMVVASNFVPLVFGEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMAGA 380
Cdd:cd13129 310 GC-VFILASQIFAWLYGKEYGSAAASMRSLAVAAILVGLSVLLGQIIASSGKIWRGFALNMVWSVIYVAAAYLLLRLYGA 388
|
410 420
....*....|....*....|...
gi 550733428 381 IGVTLGFLLVQIVNTVLSYFVMI 403
Cdd:cd13129 389 PGLALAMSAAYCVLIIFQTLTLQ 411
|
|
| MATE_like_10 |
cd13125 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
13-404 |
2.47e-08 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240530 [Multi-domain] Cd Length: 409 Bit Score: 56.01 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 13 WSAMATIVIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQ-----RKEISHLE--LTTLYWLNV 85
Cdd:cd13125 5 LSGISTLIKILAGLIINKVVAVYLGPSGVALLGQLQNFVTILQTIAGGGINNGVVKytaeyKDDEEKLArvWSTAFRITL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 86 GLGIFVFVLVFLLSDVIAGV-LHNPDLAPLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAH 164
Cdd:cd13125 85 ILSILGGLLLLLFSKPLSSLlFGDIDYSWVFILLGLALPLFALNNLLLAILNGLKEIKRYALINIISSLIGLLVSVLLVY 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 165 FWPLAmTAILGYLVNSAVRTLLFGFFGRKIYRPGLHFSLasVSSNLRFGAWLTADSIINYVNTNLSTLV-------LARI 237
Cdd:cd13125 165 FYGLK-GALLALVLNQSLIFLVTLIYSRKQPWFKLKYLW--GRLDKDIIKKLLKFSLMALVSALSLPLSqiivrniLIRQ 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 238 LGASVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDdTEKLRVNFYKLLSVVGIINFPVLLGLMVVASNFVPLVFG 317
Cdd:cd13125 242 LGWEAAGYWQAVWKISDVYLGFITTALSTYYLPRLSAIKD-NKELKREVNKQLKVILPLVAIGALLIYLLRDLIIQILFS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 318 EKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIIVGGHMAGAIGVTLGFLLVQIVNTVL 397
Cdd:cd13125 321 EEFLPARELFLWQLIGDFFKIASWLLGYILLAKGMTKLFIITEILFALLFVLLSLLFIPLFGLEGAGIAYAINYILYLIL 400
|
....*..
gi 550733428 398 SYFVMIK 404
Cdd:cd13125 401 MYFIFRK 407
|
|
| MATE_like_11 |
cd13126 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
196-393 |
1.27e-06 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240531 [Multi-domain] Cd Length: 396 Bit Score: 50.76 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 196 RPGLHFSLASVSSNLRFGAWLTADSIINYVNTNLSTLVLARILGASVAGGYNLAyNVAVVPPMKLNPIITRVLFPAFAKI 275
Cdd:cd13126 184 WPRPRGALAWLREHRDLTGYLLAEFVLGQGAAQNSDLLLGALGSLAAVGALRGA-QTLLGPLTILAAGLVTAAVPELARR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 276 QDDTEKLRVNFYKLLS-VVGIINFPVLLGLMVVASNFVPLVFGEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVD 354
Cdd:cd13126 263 KDMSPRRRRRAALVLSgVVAAAALVWGLALLLLPDLIGEALLGDVWAGAQALLLPLILAQAGAALAVGPAAYLLALGRAK 342
|
170 180 190
....*....|....*....|....*....|....*....
gi 550733428 355 ISFKFNVFKTFLFIPAIIVGGHMAGAIGVTLGFLLVQIV 393
Cdd:cd13126 343 GTLRVNLVGAPQLLGLGLTGALLGGAVGAAWGLALALLL 381
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
11-398 |
1.35e-05 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 47.32 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 11 AKWSAMATIVIIGLGLVQMTVLARIIDN--HQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLE-----LTTLYWL 83
Cdd:cd12082 1 AAPLLLSMLLQTLYNLVDTFFLGRLLGDalAAVGLAFPLIALLIALGVGLSVGTSALISQAIGAGDEEkarrvLVQSIVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 84 NVGLGIFVFVLVFLLSDVIAGVLHNPDL-----APLMRTLSFAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTF 158
Cdd:cd12082 81 AILLGLLLAALLLFFSPLILSLLGAEEEvielaATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 159 TVVSAHFW--------PLAMTAILGYLVNS--AVRTLLFGFFGRKIYRPGLHFSLASVSSNLRFGAWLTADSIINYVNTN 228
Cdd:cd12082 161 DPLLIFGLgppelgiaGAALATVISYVIGAllLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 229 LSTLVLARILGASVAGGYNLAYNVAVVPPMKLNPIITRVL-FPAFAKIQDDTEKLRVNFYKLLSVVGIINFpVLLGLMVV 307
Cdd:cd12082 241 IIVAIVAAFGGAAALAAYTVAFRIASLAFMPALGLAQAALpVVGQNLGAGNFDRARRITWVALLIGLLIGA-VLGLLILL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 308 ASNFVPLVF--GEKWNSI-IPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTF-LFIPAIIVGGHMA-GAIG 382
Cdd:cd12082 320 FPEPILSLFtnDPEFLELaVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWvVRLPLAYVLAYLGlGLYG 399
|
410
....*....|....*.
gi 550733428 383 VTLGFLLVQIVNTVLS 398
Cdd:cd12082 400 IWLALVISLILAALVL 415
|
|
| MATE_SpoVB_like |
cd13124 |
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related ... |
24-126 |
3.26e-05 |
|
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins; The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240529 [Multi-domain] Cd Length: 434 Bit Score: 46.31 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550733428 24 LGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGI----------ANSIIQRKEISHLELTTLYWLnVGLGIFVFV 93
Cdd:cd13124 13 LGAIYRIPLQNIIGDEGMGLYQMAYPIYGIFLTLATAGIpvaisklvaeYNALGDYKGARRIFRVSLILL-LILGLVFFL 91
|
90 100 110
....*....|....*....|....*....|....
gi 550733428 94 LVFLLSDVIAG-VLHNPDLAPLMRTLSFAFVVIP 126
Cdd:cd13124 92 LLFFGAPFLAQlLLGDPRLAPVIRALAPAILIVP 125
|
|
| |
