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Conserved domains on  [gi|550714298|ref|WP_022647187|]
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MULTISPECIES: molybdopterin-dependent oxidoreductase [Enterobacter]

Protein Classification

COG3915 family protein( domain architecture ID 10008133)

COG3915 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3915 COG3915
Uncharacterized conserved protein [Function unknown];
2-164 4.76e-86

Uncharacterized conserved protein [Function unknown];


:

Pssm-ID: 443120  Cd Length: 167  Bit Score: 249.42  E-value: 4.76e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298   2 RLILMLCCFLVQSVTLAGELPKPAGKPILTIYGNIENTNESGKAVFDIASLEKLGMVSFQTSSPWYNGRTKFEGVPMSKL 81
Cdd:COG3915    5 RLLALLLALLLLPAAAAAALPAPAGPVILTVSGKIGNTNAGGAATFDLAMLEALPQTEITTTTPWTDGVQTFRGVLLRDL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298  82 MDYIGAKGNVVNVIALNDYATAIPLSDFKKYNAILALKVNGEYMRIRDKGPAFIVYPYDSLPELNNQIYYSRSAWQVSKM 161
Cdd:COG3915   85 LAAVGAKGTTLRAVALNDYAVEIPISDLEEYGVILAYRMDGKPMSVRDKGPLWLIYPYDDYPELQTEVYYSRSVWQLKRI 164


                 ...
gi 550714298 162 KIE 164
Cdd:COG3915  165 EVE 167
 
Name Accession Description Interval E-value
COG3915 COG3915
Uncharacterized conserved protein [Function unknown];
2-164 4.76e-86

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443120  Cd Length: 167  Bit Score: 249.42  E-value: 4.76e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298   2 RLILMLCCFLVQSVTLAGELPKPAGKPILTIYGNIENTNESGKAVFDIASLEKLGMVSFQTSSPWYNGRTKFEGVPMSKL 81
Cdd:COG3915    5 RLLALLLALLLLPAAAAAALPAPAGPVILTVSGKIGNTNAGGAATFDLAMLEALPQTEITTTTPWTDGVQTFRGVLLRDL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298  82 MDYIGAKGNVVNVIALNDYATAIPLSDFKKYNAILALKVNGEYMRIRDKGPAFIVYPYDSLPELNNQIYYSRSAWQVSKM 161
Cdd:COG3915   85 LAAVGAKGTTLRAVALNDYAVEIPISDLEEYGVILAYRMDGKPMSVRDKGPLWLIYPYDDYPELQTEVYYSRSVWQLKRI 164


                 ...
gi 550714298 162 KIE 164
Cdd:COG3915  165 EVE 167
SO_family_Moco cd00321
Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) ...
 30-123 1.02e-07

Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.


Pssm-ID: 238198 [Multi-domain]  Cd Length: 156  Bit Score: 48.72  E-value: 1.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298  30 LTIYGNIENtnesgKAVFDIASLEKLGMVSFQT-----SSPWYNGRT---KFEGVPMSKLMDYIGAKGNVVNVIA----- 96
Cdd:cd00321   19 LEVDGLVEK-----PLSLTLDDLKALPQVEVIAtlhcvGNRWGGGAVsnaEWTGVPLRDLLEEAGPKPGARYVVFegadd 93

                         90       100
                 ....*....|....*....|....*....
gi 550714298  97 --LNDYATAIPLSDFKKYNAILALKVNGE 123
Cdd:cd00321   94 pgGDGYTTSLPLEKALDPDVLLAYEMNGE 122
Oxidored_molyb pfam00174
Oxidoreductase molybdopterin binding domain; This domain is found in a variety of ...
 65-123 8.27e-06

Oxidoreductase molybdopterin binding domain; This domain is found in a variety of oxidoreductases. This domain binds to a molybdopterin cofactor. Xanthine dehydrogenases, that also bind molybdopterin, have essentially no similarity.


Pssm-ID: 459699 [Multi-domain]  Cd Length: 168  Bit Score: 43.64  E-value: 8.27e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550714298   65 PWYNGR---TKFEGVPMSKLMDYIGAKGNVVNVIA-------LNDYATAIPLSDFKKYNAILALKVNGE 123
Cdd:pfam00174  60 QWGGGAignAEWTGVPLRDLLERAGVKPGAKHVLFegadtlgDGGYTTSLPLEKALDDDVLLAYEMNGE 128
 
Name Accession Description Interval E-value
COG3915 COG3915
Uncharacterized conserved protein [Function unknown];
2-164 4.76e-86

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443120  Cd Length: 167  Bit Score: 249.42  E-value: 4.76e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298   2 RLILMLCCFLVQSVTLAGELPKPAGKPILTIYGNIENTNESGKAVFDIASLEKLGMVSFQTSSPWYNGRTKFEGVPMSKL 81
Cdd:COG3915    5 RLLALLLALLLLPAAAAAALPAPAGPVILTVSGKIGNTNAGGAATFDLAMLEALPQTEITTTTPWTDGVQTFRGVLLRDL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298  82 MDYIGAKGNVVNVIALNDYATAIPLSDFKKYNAILALKVNGEYMRIRDKGPAFIVYPYDSLPELNNQIYYSRSAWQVSKM 161
Cdd:COG3915   85 LAAVGAKGTTLRAVALNDYAVEIPISDLEEYGVILAYRMDGKPMSVRDKGPLWLIYPYDDYPELQTEVYYSRSVWQLKRI 164


                 ...
gi 550714298 162 KIE 164
Cdd:COG3915  165 EVE 167
MsrP COG2041
Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and ...
 30-123 3.26e-09

Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases [Energy production and conversion];


Pssm-ID: 441644 [Multi-domain]  Cd Length: 183  Bit Score: 53.24  E-value: 3.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298  30 LTIYGNIENtnesgKAVFDIASLEKLGMVSFQT----SSPWYNGRTKFEGVPMSKLMDYIGAKGNVVNVIAL---NDYAT 102
Cdd:COG2041   37 LRVDGLVEK-----PLTLTLDDLLALPLEERIYrlhcVENWSGGVAPWTGVPLRDLLERAGPKPGAKYVLFEsadPGYTE 111

                         90       100
                 ....*....|....*....|.
gi 550714298 103 AIPLSDFKKYNAILALKVNGE 123
Cdd:COG2041  112 SLPLDEALDPDTLLAYGMNGE 132
SO_family_Moco cd00321
Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) ...
 30-123 1.02e-07

Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.


Pssm-ID: 238198 [Multi-domain]  Cd Length: 156  Bit Score: 48.72  E-value: 1.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298  30 LTIYGNIENtnesgKAVFDIASLEKLGMVSFQT-----SSPWYNGRT---KFEGVPMSKLMDYIGAKGNVVNVIA----- 96
Cdd:cd00321   19 LEVDGLVEK-----PLSLTLDDLKALPQVEVIAtlhcvGNRWGGGAVsnaEWTGVPLRDLLEEAGPKPGARYVVFegadd 93

                         90       100
                 ....*....|....*....|....*....
gi 550714298  97 --LNDYATAIPLSDFKKYNAILALKVNGE 123
Cdd:cd00321   94 pgGDGYTTSLPLEKALDPDVLLAYEMNGE 122
arch_bact_SO_family_Moco cd02109
bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding ...
 30-138 5.25e-07

bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.


Pssm-ID: 239027 [Multi-domain]  Cd Length: 180  Bit Score: 46.85  E-value: 5.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550714298  30 LTIYGNIENtnesgKAVFDIASLEKLGMVSFQTS----SPWYNGRTKFEGVPMSKLMDYIGAKGNVVNVIA--LNDYATA 103
Cdd:cd02109   29 LRVTGLVEN-----PLSLTYEDLLALPQTEYTADfhcvTGWSKLDVVWEGVSLKDLLEAARPDPEATFVMAhsYDGYTTN 103

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 550714298 104 IPLSDFKKYNAILALKVNGEYMRIRDKGPAFIVYP 138
Cdd:cd02109  104 LPLEDLLREDSLLATKMDGEPLPPEHGGPARLVVP 138
Oxidored_molyb pfam00174
Oxidoreductase molybdopterin binding domain; This domain is found in a variety of ...
 65-123 8.27e-06

Oxidoreductase molybdopterin binding domain; This domain is found in a variety of oxidoreductases. This domain binds to a molybdopterin cofactor. Xanthine dehydrogenases, that also bind molybdopterin, have essentially no similarity.


Pssm-ID: 459699 [Multi-domain]  Cd Length: 168  Bit Score: 43.64  E-value: 8.27e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550714298   65 PWYNGR---TKFEGVPMSKLMDYIGAKGNVVNVIA-------LNDYATAIPLSDFKKYNAILALKVNGE 123
Cdd:pfam00174  60 QWGGGAignAEWTGVPLRDLLERAGVKPGAKHVLFegadtlgDGGYTTSLPLEKALDDDVLLAYEMNGE 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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