|
Name |
Accession |
Description |
Interval |
E-value |
| Pgu1 |
COG5434 |
Polygalacturonase [Carbohydrate transport and metabolism]; |
21-397 |
1.55e-100 |
|
Polygalacturonase [Carbohydrate transport and metabolism];
Pssm-ID: 444185 [Multi-domain] Cd Length: 373 Bit Score: 305.59 E-value: 1.55e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 21 TPKTGGTIYNIMDYGAKGDGVTDDAAAIQAAIDQCSKSGGGTVLVPAGrTFMCSPFHLASFVELHLEPNSCLLANPDEAA 100
Cdd:COG5434 2 EPSFPAKTFNITDFGAKGDGKTLNTAAIQKAIDACAAAGGGTVLVPAG-TYLTGPIFLKSNVTLHLEKGATLLGSTDPAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 101 YTLSAFRdNRGEGMMW----IYGQDLKEVSITGTGAIDGNGVSFMG--KELEDSYELKPVTDFDPRPHVLTLINIEKTVI 174
Cdd:COG5434 81 YPLVETR-WEGGELKGysalIYAENAENIAITGEGTIDGNGDAWWPwkKEARQSGWVPVGAYDYLRPRLIQLKNCKNVLL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 175 RDVTIRNSAYWTVHLIGCNDVSIDGISILNNLKIRNGDGIDVDHSKNVRIANCHIESGDDCICLKNRREFEEY--GSCED 252
Cdd:COG5434 160 EGVTLRNSPFWTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIKSGRDADGRrnRPTEN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 253 IVVTNCTMVSRSCAIKIGSENMDKINNVLFNNCIIKNSNRGIGIQNRDE--GTVTNVIFSNMIVDCMffsdvwwgKAEPI 330
Cdd:COG5434 240 IVIRNCTFRSGHGGIVIGSETSGGVRNVTVENCTFDGTDRGLRIKSRRGrgGVVENITIRNITMRNV--------KGTPI 311
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 547798355 331 YVTSYpravgnhkdagwrfPKGATEGRCGEVSRIYFTNIKCT-SENGIFVGGDTQDKVNHIYFEDVDL 397
Cdd:COG5434 312 FINLF--------------YEGDRGGPTPTFRNITISNVTATgAKSAILIAGLPEAPIENITLENVTI 365
|
|
| PLN02188 |
PLN02188 |
polygalacturonase/glycoside hydrolase family protein |
1-397 |
2.74e-22 |
|
polygalacturonase/glycoside hydrolase family protein
Pssm-ID: 215120 [Multi-domain] Cd Length: 404 Bit Score: 98.38 E-value: 2.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 1 MRAKAFLFVLCSILLLGACGTPKTGGTI--------YNIMDYGAKGDGVTDDAAAIQAA-IDQCSKSGGGTVLVPAGrTF 71
Cdd:PLN02188 1 MEFRLLLLLVVVFIVNALVLSSAGGGSVvkgsstflFDVRSFGARANGHTDDSKAFMAAwKAACASTGAVTLLIPPG-TY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 72 MCSPFHLASFVElhlepNSCLLANPDEAAYTLSAFRDNRGegmmWIYGQDLKEVSITGTGAIDGNGVsfmgkeLEDSYEL 151
Cdd:PLN02188 80 YIGPVQFHGPCT-----NVSSLTFTLKAATDLSRYGSGND----WIEFGWVNGLTLTGGGTFDGQGA------AAWPFNK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 152 KPV-TDFDPRPHVLTLINIEKTVIRDVTIRNSAYWTVHLIGCNDVSIDGISILNNLKIRNGDGIDVDHSKNVRIANCHIE 230
Cdd:PLN02188 145 CPIrKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIG 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 231 SGDDCICLknrrefeeyGSCEDivvtNCTMVSRSC----AIKIGS----ENMDKINNVLFNNCIIKNSNRGIGIQ----N 298
Cdd:PLN02188 225 TGDDCISI---------GQGNS----QVTITRIRCgpghGISVGSlgryPNEGDVTGLVVRDCTFTGTTNGIRIKtwanS 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 299 RDEGTVTNVIFSNMIVDcmffsDVwwgkAEPIYV-TSY-PRAVGNHKdagwrFPKGATegrcgeVSRIYFTNIKCTSENG 376
Cdd:PLN02188 292 PGKSAATNMTFENIVMN-----NV----TNPIIIdQKYcPFYSCESK-----YPSGVT------LSDIYFKNIRGTSSSQ 351
|
410 420
....*....|....*....|...
gi 547798355 377 IFVGGDTQDKV--NHIYFEDVDL 397
Cdd:PLN02188 352 VAVLLKCSRGVpcQGVYLQDVHL 374
|
|
| PLN02218 |
PLN02218 |
polygalacturonase ADPG |
27-315 |
2.68e-19 |
|
polygalacturonase ADPG
Pssm-ID: 177865 [Multi-domain] Cd Length: 431 Bit Score: 89.70 E-value: 2.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 27 TIYNIMDYGAKGDGVTDDAAAIQAA-IDQCSKSGGGTVLVPAGRTFMCSPFHLASfvelhlePNSCLLANPDEAAYTLSA 105
Cdd:PLN02218 66 TTVSVSDFGAKGDGKTDDTQAFVNAwKKACSSNGAVNLLVPKGNTYLLKSIQLTG-------PCKSIRTVQIFGTLSASQ 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 106 FRDNRGEGMMWIYGQDLKEVSITG--TGAIDGNGVSFMGKELEDSyELKPVTDfdpRPHVLTLINIEKTVIRDVTIRNSA 183
Cdd:PLN02218 139 KRSDYKDISKWIMFDGVNNLSVDGgsTGVVDGNGETWWQNSCKRN-KAKPCTK---APTALTFYNSKSLIVKNLRVRNAQ 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 184 YWTVHLIGCNDVSIDGISILNNLKIRNGDGIDVDHSKNVRIANCHIESGDDCICLknrrefeEYGScedivvTNCTMVSR 263
Cdd:PLN02218 215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISI-------ESGS------QNVQINDI 281
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 547798355 264 SC----AIKIGSENMDK----INNVLFNNCIIKNSNRGIGIQNRD--EGTVTNVIFSNMIVD 315
Cdd:PLN02218 282 TCgpghGISIGSLGDDNskafVSGVTVDGAKLSGTDNGVRIKTYQggSGTASNIIFQNIQME 343
|
|
| Glyco_hydro_28 |
pfam00295 |
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ... |
98-313 |
7.14e-18 |
|
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.
Pssm-ID: 425588 [Multi-domain] Cd Length: 319 Bit Score: 84.36 E-value: 7.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 98 EAAYTLSAFRDNrgegmmWIYGQDLKEVSITGtGAIDGNGVSFMGKELEDSYELKPvtdfdpRPHVLTLINIEKTVIRDV 177
Cdd:pfam00295 33 TFGYKEWNGKLI------WISGSSITVTGASG-GTIDGQGQRWWDGKGTKKNGGKK------KPKFIYIHKVKNSKITGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 178 TIRNSAYWTVHLIGCNDVSIDGISILN---NLKIRNGDGIDVDHSKNVRIANCHIESGDDCICLknrrefeeyGSCEDIV 254
Cdd:pfam00295 100 NIKNSPVFHFSVQSGTDLTISDITIDNsagDSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAI---------NSGSNIS 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 547798355 255 VTNCTmVSRSCAIKIGSENMDK---INNVLFNNCIIKNSNRGIGIQNRD--EGTVTNVIFSNMI 313
Cdd:pfam00295 171 ITNVT-CGGGHGISIGSVGGRSdntVKNVTVKDSTVVNSDNGVRIKTISgaTGTVSNITYENIV 233
|
|
| PLN03010 |
PLN03010 |
polygalacturonase |
26-376 |
1.11e-17 |
|
polygalacturonase
Pssm-ID: 215540 [Multi-domain] Cd Length: 409 Bit Score: 84.66 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 26 GTIYNIMDYGAKGDGVTDDAAAIQAA-IDQCSKSGG-GTVLVPAGRTFMCSPFHL-----ASFVELHLEpnSCLLANPDE 98
Cdd:PLN03010 44 GQNYNVLKFGAKGDGQTDDSNAFLQAwNATCGGEGNiNTLLIPSGKTYLLQPIEFkgpckSTSIKVQLD--GIIVAPSNI 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 99 AAYTLSAFRdnrgegmMWIYGQDLKEVSITGTGAIDGNGVSFMgkeledsyelkpvtdfdprpHVLTLINIEKTVIRDVT 178
Cdd:PLN03010 122 VAWSNPKSQ-------MWISFSTVSGLMIDGSGTIDGRGSSFW--------------------EALHISKCDNLTINGIT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 179 IRNSAYWTVHLIGCNDVSIDGISILNNLKIRNGDGIDVDHSKNVRIANCHIESGDDCICLKNrrefeeyGSCE-DIVVTN 257
Cdd:PLN03010 175 SIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINS-------GSSNiNITQIN 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 258 CtmvSRSCAIKIGSENMD----KINNVLFNNCIIKNSNRGIGIQN--RDEGTVTNVIFSN---------MIVDCMFFSDV 322
Cdd:PLN03010 248 C---GPGHGISVGSLGADganaKVSDVHVTHCTFNQTTNGARIKTwqGGQGYARNISFENitlintknpIIIDQQYIDKG 324
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 323 WWGKAEPIYVtsyprAVGNHKDAGWR---FPKGATEGRCGEVSR---IYFTNIKCTSENG 376
Cdd:PLN03010 325 KLDATKDSAV-----AISNVKYVGFRgttSNENAITLKCSAITHckdVVMDDIDVTMENG 379
|
|
| PLN02793 |
PLN02793 |
Probable polygalacturonase |
28-398 |
3.79e-16 |
|
Probable polygalacturonase
Pssm-ID: 215426 [Multi-domain] Cd Length: 443 Bit Score: 80.31 E-value: 3.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 28 IYNIMDYGAKGDGVTDDAAAIQAA-IDQCSKSGGGTVLVPAGRTFMCSPFHLAS--FVELHLEPNSCLLANPDEAAYTLS 104
Cdd:PLN02793 52 VLHVGDFGAKGDGVTDDTQAFKEAwKMACSSKVKTRIVIPAGYTFLVRPIDLGGpcKAKLTLQISGTIIAPKDPDVWKGL 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 105 AFRDnrgegmmWIYGQDLKEVSITGTGAIDGNGvsfmGKELEDSYELKPVTDFDPRPHVLTLINIEKTVIRDVTIRNSAY 184
Cdd:PLN02793 132 NPRK-------WLYFHGVNHLTVEGGGTVNGMG----HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQ 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 185 WTVHLIGCNDVSIDGISILNNLKIRNGDGIDVDHSKNVRIANCHIESGDDCIClknrrefeeygscediVVTNCTMVSRS 264
Cdd:PLN02793 201 MHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCIS----------------IVGNSSRIKIR 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 265 ---C----AIKIGSENM----DKINNVLFNNCIIKNSNRGIGIQNRD--EGTVTNVIFSNmivdcMFFSDVwwgkAEPIY 331
Cdd:PLN02793 265 niaCgpghGISIGSLGKsnswSEVRDITVDGAFLSNTDNGVRIKTWQggSGNASKITFQN-----IFMENV----SNPII 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 547798355 332 VTSYpravgnHKDAgwRFPkGATEGRCGEVSRIYFTNIKCTS--ENGIFVGGDTQDKVNHIYFEDVDLL 398
Cdd:PLN02793 336 IDQY------YCDS--RKP-CANQTSAVKVENISFVHIKGTSatEEAIKFACSDSSPCEGLYLEDVQLL 395
|
|
| PLN03003 |
PLN03003 |
Probable polygalacturonase At3g15720 |
24-303 |
6.89e-14 |
|
Probable polygalacturonase At3g15720
Pssm-ID: 178580 [Multi-domain] Cd Length: 456 Bit Score: 73.56 E-value: 6.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 24 TGGTIYNIMDYGAKGDGVTDDAAAIQAA-IDQCSKSGGGTVLVPAGRTFMCSPFHLAS-------FVELHLEpnsclLAN 95
Cdd:PLN03003 19 TSSNALDVTQFGAVGDGVTDDSQAFLKAwEAVCSGTGDGQFVVPAGMTFMLQPLKFQGsckstpvFVQMLGK-----LVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 96 PDEAAYtlsafrdnRGEGMMWIYGQDLKEVSITGTGAIDGNGVSFmgkeledsYELKpvtdfDPRPHVLTLINIEKTVIR 175
Cdd:PLN03003 94 PSKGNW--------KGDKDQWILFTDIEGLVIEGDGEINGQGSSW--------WEHK-----GSRPTALKFRSCNNLRLS 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 176 DVTIRNSAYWTVHLIGCNDVSIDGISILNNLKIRNGDGIDVDHSKNVRIANCHIESGDDCICLKNRrefeeygscedivV 255
Cdd:PLN03003 153 GLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-------------T 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 547798355 256 TNCTMVSRSC----AIKIGSENMD----KINNVLFNNCIIKNSNRGIGIQNRDEGT 303
Cdd:PLN03003 220 SNIHISGIDCgpghGISIGSLGKDgetaTVENVCVQNCNFRGTMNGARIKTWQGGS 275
|
|
| NosD |
COG3420 |
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ... |
173-316 |
3.71e-09 |
|
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];
Pssm-ID: 442646 [Multi-domain] Cd Length: 343 Bit Score: 58.00 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 173 VIRDVTIRNSAYwTVHLIGCNDVSIDGISILNNLKIRN--GDGIDVDHSKNVRIANCHIESGDDCICL---------KNR 241
Cdd:COG3420 110 VIENNRIENNLF-GIYLEGSDNNVIRNNTISGNRDLRAdrGNGIHLWNSPGNVIEGNTISGGRDGIYLefsdnnvirNNT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 242 REFEEYG----SCEDIVVTNCT----------MVSRSCAIK----IGSEN----MDKINNVLFNNCIIKNSNRGIGIQNr 299
Cdd:COG3420 189 IRNLRYGihymYSNDNLVEGNTfrdngagialMYSKGNTVRgntiLGNSGygilLKESSDSVIEGNTISGNGKGIFIYN- 267
|
170
....*....|....*..
gi 547798355 300 degTVTNVIFSNMIVDC 316
Cdd:COG3420 268 ---SNRNTIRGNLFAGN 281
|
|
| PLN02155 |
PLN02155 |
polygalacturonase |
24-314 |
6.12e-08 |
|
polygalacturonase
Pssm-ID: 165802 [Multi-domain] Cd Length: 394 Bit Score: 54.69 E-value: 6.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 24 TGGTIYNIMDYGAKGDGVTDDAAAIQAA-IDQCSKSGGGTVLVPAGrTFMCSPFHLASfvelhlepnSCLLANPDEAAYT 102
Cdd:PLN02155 23 SASNVFNVVSFGAKPDGVTDSTAAFLKAwQGACGSASSATVVVPTG-TFLLKVITFGG---------PCKSKITFQVAGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 103 LSAFRDNR--GEGMMWIYGQDLKEVSITGtGAIDGNGVSFMGKEledsyelKPVTDFDPRPHVLTLINIEKTVIRDVTIR 180
Cdd:PLN02155 93 VVAPEDYRtfGNSGYWILFNKVNRFSLVG-GTFDARANGFWSCR-------KSGQNCPPGVRSISFNSAKDVIISGVKSM 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 181 NSAYWTVHLIGCNDVSIDGISILNNLKIRNGDGIDVDHSKNVRIANCHIESGDDCICLKNRrefeeygscedivVTNCTM 260
Cdd:PLN02155 165 NSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-------------TRNFLI 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 547798355 261 VSRSC----AIKIGS----ENMDKINNVLFNNCIIKNSNRGIGIQN---RDEGTVTNVIFSNMIV 314
Cdd:PLN02155 232 TKLACgpghGVSIGSlakeLNEDGVENVTVSSSVFTGSQNGVRIKSwarPSTGFVRNVFFQDLVM 296
|
|
| NosD |
pfam05048 |
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ... |
171-316 |
1.23e-06 |
|
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.
Pssm-ID: 428281 [Multi-domain] Cd Length: 215 Bit Score: 49.34 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 171 KTVIRDVTIRNSAYwtVHLIGCNDVSIDGISIlnnlkIRNGDGIDVDHSKNVRIANCHIESGDDCIClknrrefeeYGSC 250
Cdd:pfam05048 8 DTIGIYNGLSRGNG--IQLWNTEGNVISNNDI-----INSRDGIYLDASNNNTITGNRISNLRYGIH---------LMNS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 251 EDIVVTNCTMVSRSCAIKIGSENMDKI-------------------NNVLFNNCIIKNSNRGIGIQNRDEgtvtNVIFSN 311
Cdd:pfam05048 72 NDNTISDNVFSGNTAGIALMSSSNNTLenntisgntnygillsdssNNTISNNTISNNNGKGIFLYNSDY----NTITGN 147
|
....*
gi 547798355 312 MIVDC 316
Cdd:pfam05048 148 RITSN 152
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
166-311 |
1.41e-06 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 48.17 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 166 LINIEKTVIRDVTIRNSAYWTVHLIGCNDVSIDGISILNNlkirNGDGIDVDHSKNVRIANCHIESGDDC-ICLKNrref 244
Cdd:pfam13229 28 LRGSSNATIENNTITNNGGDGIEISGSSNNTISNNTISNN----GGGGIALRGSSNNLIENNTISNNGGAgIYLSD---- 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 547798355 245 eeygsCEDIVVTNCTMVS-RSCAIKIGSENMdkiNNVLFNNCIIKNSNRGIGIQNRDegtvTNVIFSN 311
Cdd:pfam13229 100 -----SSNNTIENNIIHNnGGSGIVIEDSSN---NVTISNNTVTNNKGAGILIVGGS----SNNTVEN 155
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
172-318 |
4.08e-06 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 46.63 E-value: 4.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 172 TVIRDVTIRNSAYWTVHLIGCNDVSIDGISILNNlkirNGDGIDVDHSKNVRIANCHIE-SGDDCICLKNrrefeeygsC 250
Cdd:pfam13229 11 ATIKNNTISNNGGYGIYLRGSSNATIENNTITNN----GGDGIEISGSSNNTISNNTISnNGGGGIALRG---------S 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 547798355 251 EDIVVTNCTMVSRScaiKIGSENMDKINNVLFNNCIIKNSNRGIGIQNrdeGTVTNVIFSNMIVDCMF 318
Cdd:pfam13229 78 SNNLIENNTISNNG---GAGIYLSDSSNNTIENNIIHNNGGSGIVIED---SSNNVTISNNTVTNNKG 139
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
187-321 |
6.32e-06 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 46.25 E-value: 6.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 187 VHLIGCNDVSIDGISILNNlkirNGDGIDVDHSKNVRIANCHIE-SGDDCICLKNrrefeeygsCEDIVVTNCTMV-SRS 264
Cdd:pfam13229 3 ILLNGSSNATIKNNTISNN----GGYGIYLRGSSNATIENNTITnNGGDGIEISG---------SSNNTISNNTISnNGG 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 547798355 265 CAIKIGSENmdkiNNVLFNNCIIKNSNRGIGIQNRDEGTVTNVIFSNMIVDCMFFSD 321
Cdd:pfam13229 70 GGIALRGSS----NNLIENNTISNNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIED 122
|
|
| NosD |
pfam05048 |
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ... |
193-311 |
1.24e-04 |
|
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.
Pssm-ID: 428281 [Multi-domain] Cd Length: 215 Bit Score: 43.18 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 193 NDVSIDGISILNNLkiRNGDGIDVDHSKNVRIANCHIESGDDCICL---------KNRREFEEYG----SCEDIVVTNCT 259
Cdd:pfam05048 3 NAISGDTIGIYNGL--SRGNGIQLWNTEGNVISNNDIINSRDGIYLdasnnntitGNRISNLRYGihlmNSNDNTISDNV 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 547798355 260 MVSRSCAIKIGSENmdkiNNVLFNNCIIKNSNRGIGIQNRDEGTVT-NVIFSN 311
Cdd:pfam05048 81 FSGNTAGIALMSSS----NNTLENNTISGNTNYGILLSDSSNNTISnNTISNN 129
|
|
| NosD |
COG3420 |
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ... |
164-312 |
1.47e-04 |
|
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];
Pssm-ID: 442646 [Multi-domain] Cd Length: 343 Bit Score: 43.75 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 164 LTLINIEKTVIRDvtirNSAYwTVHLIGCNDVSIDGISILNNLKIRNGD--GIDVDHSKNVRIANCHIESGDDCICLKNr 241
Cdd:COG3420 54 LTLIGEGGAVIDG----GGKG-TVITITADNVTVRGLTITGSGDSLTDDdaGIYVRGADNAVIENNRIENNLFGIYLEG- 127
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 547798355 242 refeeygsCEDIVVTNCTMVSRScaiKIGSENMDKI-----NNVLFNNCIIKNSNRGIGIQNRDEGTVTNVIFSNM 312
Cdd:COG3420 128 --------SDNNVIRNNTISGNR---DLRADRGNGIhlwnsPGNVIEGNTISGGRDGIYLEFSDNNVIRNNTIRNL 192
|
|
| Pectate_lyase_3 |
pfam12708 |
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ... |
30-294 |
3.75e-03 |
|
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
Pssm-ID: 403800 [Multi-domain] Cd Length: 213 Bit Score: 38.84 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 30 NIMDYGAKGDGVTDDAAAIQAA-IDQCSKSGGGTVLVPAGRTFMCSPFHLASFVELhlepnscllanpdeaaytlsafrd 108
Cdd:pfam12708 3 NVKDYGAKGDGVTDDTAAIQKAiDDGGATTTPAVVYFPPGTYLVSSPIILYSGTVL------------------------ 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 109 nRGEGMMWiygqdlkeVSITGTGAIDGNGVSFMgkeleDSYelkpVTDFDPRPHVLTLINIEKTVIRDVTIRNSAYWTVH 188
Cdd:pfam12708 59 -VGDGNNP--------PVLKAAPNFVGAGLIDG-----DPY----TGGGPGIINTNNFYRQIRNLVIDITGVAPGATGIH 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 189 LIGCNDVSIDGISI-LNNLKIRNGDGIDVDHSKNVRIANCHIESGDDCICLKNrrefeeygscEDIVVTNCTMVSRSCAI 267
Cdd:pfam12708 121 WQVAQATSLQNVVFeMSFGSGNKHQGIFMENGSGGFLNDLVFNGGDIGIAVGN----------QQFTTRNITFHNCGTGI 190
|
250 260
....*....|....*....|....*..
gi 547798355 268 KIGSEnmdkiNNVLFNNCIIKNSNRGI 294
Cdd:pfam12708 191 DVLWG-----WGWTYSNNNINNCGVGI 212
|
|
| Beta_helix |
pfam13229 |
Right handed beta helix region; This region contains a parallel beta helix region that shares ... |
166-287 |
4.58e-03 |
|
Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
Pssm-ID: 463811 [Multi-domain] Cd Length: 158 Bit Score: 37.77 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547798355 166 LINIEKTVIRDVTIRNSAYWTVHLIGCNDVSIDGISILNNlkirNGDGIDVDHSKNVRIANCHIES-GDDCICLknrref 244
Cdd:pfam13229 51 ISGSSNNTISNNTISNNGGGGIALRGSSNNLIENNTISNN----GGAGIYLSDSSNNTIENNIIHNnGGSGIVI------ 120
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 547798355 245 eeYGSCEDIVVTNCTMVS-RSCAIKIgsenMDKINNVLFNNCII 287
Cdd:pfam13229 121 --EDSSNNVTISNNTVTNnKGAGILI----VGGSSNNTVENNTF 158
|
|
| |
