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Conserved domains on  [gi|547279235|ref|WP_022012794|]
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MULTISPECIES: iron ABC transporter permease [Bacteroides]

Protein Classification

iron ABC transporter permease( domain architecture ID 10470548)

iron ABC transporter permease is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and/or iron-containing compounds

Gene Ontology:  GO:0140359|GO:0042626|GO:0006826
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BtuC super family cl42616
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 29-341 7.81e-94

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


The actual alignment was detected with superfamily member COG4139:

Pssm-ID: 443314  Cd Length: 327  Bit Score: 282.51  E-value: 7.81e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  29 VSIPIGSVWniLWGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVL 108
Cdd:COG4139   28 LSLCAGEVW--IPPTQWLSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGLVLVVL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 109 LSGALGGValsklgymgeVALSLAAVIGALSVMALIVYVSQKVKGNVTLLIIGVMIGYVASAIIGVLKYFSVEEDIRAYV 188
Cdd:COG4139  106 LGGGLLPP----------WLLSLAAIAGALLVTLLLLAFARRRLSNARLLLIGVALGIICSAIMTWAVYFSSSLDLRQLM 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 189 IWGLGSFARVSGDQMTLFVCIMVVLIpLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMF 268
Cdd:COG4139  176 YWMMGSFGGVDWRQLWLLLALLPVLL-WLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGF 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 547279235 269 IGLAVPHLCRaIFHTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKRKS 341
Cdd:COG4139  255 VGLVVPHLLR-LLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRRKI 326
 
Name Accession Description Interval E-value
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 29-341 7.81e-94

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 282.51  E-value: 7.81e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  29 VSIPIGSVWniLWGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVL 108
Cdd:COG4139   28 LSLCAGEVW--IPPTQWLSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGLVLVVL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 109 LSGALGGValsklgymgeVALSLAAVIGALSVMALIVYVSQKVKGNVTLLIIGVMIGYVASAIIGVLKYFSVEEDIRAYV 188
Cdd:COG4139  106 LGGGLLPP----------WLLSLAAIAGALLVTLLLLAFARRRLSNARLLLIGVALGIICSAIMTWAVYFSSSLDLRQLM 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 189 IWGLGSFARVSGDQMTLFVCIMVVLIpLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMF 268
Cdd:COG4139  176 YWMMGSFGGVDWRQLWLLLALLPVLL-WLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGF 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 547279235 269 IGLAVPHLCRaIFHTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKRKS 341
Cdd:COG4139  255 VGLVVPHLLR-LLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRRKI 326
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 27-337 2.45e-60

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 195.82  E-value: 2.45e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   27 GSVSIPIGSVWNILWGGTDESIiwQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFV 106
Cdd:pfam01032  13 GAVKISPSDVFSALLGGDDSLA--ALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSGAALGAVLA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  107 VLLSGALGgvalsklgymgEVALSLAAVIGALSVMALIVYVSQKVKG--NVTLLIIGVMIGYVASAIIGVLKYFSVEEDI 184
Cdd:pfam01032  91 ILLGGSLS-----------LFALPLAAFIGALLAALLVYFLSRGRGGasPLRLILAGIAVSALLSALTSLLLLLLNPEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  185 RAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCG 264
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 547279235  265 PIMFIGLAVPHLCRAIFhTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFR 337
Cdd:pfam01032 240 PIGFVGLIVPHIARLLV-GANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 29-341 2.63e-52

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 175.91  E-value: 2.63e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  29 VSIPIGSVWniLWGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVL 108
Cdd:PRK03784  31 LSLCAGEQW--ISPGDWLSPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 109 LSGALggvalsklgyMGEVALSLAAVIGALSVMALIVYVSQKVK-GNVTLLIIGVMIGYVASAIIGVLKYFSVEEDIRAY 187
Cdd:PRK03784 109 LGQGL----------LPPWALSLCAIAGALLITLILLRFARRHRlSTSRLLLAGVALGIICSALMTWAVYFSTSLDLRQL 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 188 VIWGLGSFARVSGDQMTLfvciMVVLIPLSFLLI---KTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCG 264
Cdd:PRK03784 179 MYWMMGGFGGVDWRQSWL----MLALLPVLIWLCcqgRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAG 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 547279235 265 PIMFIGLAVPHLCRAIFHTsDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKRKS 341
Cdd:PRK03784 255 AIGFIGLVIPHILRLCGLT-DHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHRA 330
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-330 2.00e-32

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 121.51  E-value: 2.00e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  63 LTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVLLSGALGGVALSklgymgevalSLAAVIGALSVMA 142
Cdd:cd06550    2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALG----------AFAFAGALAIALL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 143 LIVYVSQKVKGNVTLLIIGVMIGYVASAIIGVLKYFSvEEDIRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIK 222
Cdd:cd06550   72 VLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLS-DDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSR 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 223 TMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAVPHLCRAIFhTSDHRILMPATLLAGASLAL 302
Cdd:cd06550  151 KLNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLF-GRSHRYLLPLSALLGAILLL 229

                        250       260
                 ....*....|....*....|....*...
gi 547279235 303 VCNLVARMPgFEGALPVNSVTALVGAPV 330
Cdd:cd06550  230 LGDLLSRTL-LPSELPVGPVTALLGAPY 256
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 27-341 2.70e-32

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 123.04  E-value: 2.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   27 GSVSIPIGSVWNIL---------WGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISS 97
Cdd:TIGR03869  13 GPADISVGEVWRSVaahlgrgegFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSS 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   98 GASLGVAFVVLLSGAlggvalsklgymgeVALSLAAVIGALSVMALIVYVSqKVKGNVT---LLIIGVMIGYVASAIIGV 174
Cdd:TIGR03869  93 GASLGAVAVLVLGVA--------------VLLPVAAFAGALLALAATLGLA-RTLGTLTptrTILAGLAVSQLCAAVTSF 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  175 LKYFSVEED-IRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSG 253
Cdd:TIGR03869 158 VIFWSATGDsYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVA 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  254 VLVAIVTAYCGPIMFIGLAVPHLCRaIFHTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVAS 333
Cdd:TIGR03869 238 LLTGALVSVSGAIGFVGLILPHAVR-LLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAV 316


                  ....*...
gi 547279235  334 VLFRKRKS 341
Cdd:TIGR03869 317 LLYRSRSG 324
 
Name Accession Description Interval E-value
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 29-341 7.81e-94

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 282.51  E-value: 7.81e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  29 VSIPIGSVWniLWGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVL 108
Cdd:COG4139   28 LSLCAGEVW--IPPTQWLSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGISNGAGVGLVLVVL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 109 LSGALGGValsklgymgeVALSLAAVIGALSVMALIVYVSQKVKGNVTLLIIGVMIGYVASAIIGVLKYFSVEEDIRAYV 188
Cdd:COG4139  106 LGGGLLPP----------WLLSLAAIAGALLVTLLLLAFARRRLSNARLLLIGVALGIICSAIMTWAVYFSSSLDLRQLM 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 189 IWGLGSFARVSGDQMTLFVCIMVVLIpLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMF 268
Cdd:COG4139  176 YWMMGSFGGVDWRQLWLLLALLPVLL-WLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPIGF 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 547279235 269 IGLAVPHLCRaIFHTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKRKS 341
Cdd:COG4139  255 VGLVVPHLLR-LLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRRKI 326
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 27-339 2.68e-87

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 265.01  E-value: 2.68e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  27 GSVSIPIGSVWNILWGGtDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFV 106
Cdd:COG0609    5 GAVPISLSDVLRALLGP-DGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGAVLA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 107 VLLSGALGGVALSklgymgevalsLAAVIGALSVMALIVYVSQKVKGN--VTLLIIGVMIGYVASAIIGVLKYFSVEEDI 184
Cdd:COG0609   84 IVLGGGLSALGLP-----------LAAFLGALLAALLVYLLARRGGGLspLRLVLAGVAVSALFSALTSLLLLLADPEQL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 185 RAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCG 264
Cdd:COG0609  153 RSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAG 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 547279235 265 PIMFIGLAVPHLCRAIFHtSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKR 339
Cdd:COG0609  233 PIGFVGLVVPHIARLLVG-PDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 27-337 2.45e-60

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 195.82  E-value: 2.45e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   27 GSVSIPIGSVWNILWGGTDESIiwQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFV 106
Cdd:pfam01032  13 GAVKISPSDVFSALLGGDDSLA--ALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSGAALGAVLA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  107 VLLSGALGgvalsklgymgEVALSLAAVIGALSVMALIVYVSQKVKG--NVTLLIIGVMIGYVASAIIGVLKYFSVEEDI 184
Cdd:pfam01032  91 ILLGGSLS-----------LFALPLAAFIGALLAALLVYFLSRGRGGasPLRLILAGIAVSALLSALTSLLLLLLNPEAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  185 RAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCG 264
Cdd:pfam01032 160 QSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVG 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 547279235  265 PIMFIGLAVPHLCRAIFhTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFR 337
Cdd:pfam01032 240 PIGFVGLIVPHIARLLV-GANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 29-341 2.63e-52

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 175.91  E-value: 2.63e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  29 VSIPIGSVWniLWGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVL 108
Cdd:PRK03784  31 LSLCAGEQW--ISPGDWLSPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 109 LSGALggvalsklgyMGEVALSLAAVIGALSVMALIVYVSQKVK-GNVTLLIIGVMIGYVASAIIGVLKYFSVEEDIRAY 187
Cdd:PRK03784 109 LGQGL----------LPPWALSLCAIAGALLITLILLRFARRHRlSTSRLLLAGVALGIICSALMTWAVYFSTSLDLRQL 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 188 VIWGLGSFARVSGDQMTLfvciMVVLIPLSFLLI---KTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCG 264
Cdd:PRK03784 179 MYWMMGGFGGVDWRQSWL----MLALLPVLIWLCcqgRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAG 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 547279235 265 PIMFIGLAVPHLCRAIFHTsDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKRKS 341
Cdd:PRK03784 255 AIGFIGLVIPHILRLCGLT-DHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHRA 330
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
37-341 3.39e-42

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 155.38  E-value: 3.39e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  37 WNILWGGTDESIiwqniiWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVLLSGALGGV 116
Cdd:PRK10577 382 WNWLSGQLLDAL------LPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFG 455

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 117 ALSklgymgevalsLAAVIGALSVMALIVYVSQKVKGNVT-LLIIGVMIGYVASAIIGVLKyfsVEEDIRAYVI--WGLG 193
Cdd:PRK10577 456 WLL-----------AAALLGALAALALILLLARRGGFAPErLLLTGIALSALFTALIQLLL---ASGDPRAAQLltWLSG 521

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 194 SFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAV 273
Cdd:PRK10577 522 STYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMA 601

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 547279235 274 PHLCRAIfHTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKRKS 341
Cdd:PRK10577 602 PHLARML-GGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRRR 668
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-341 5.74e-42

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 154.61  E-value: 5.74e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   1 MKRPTVPLMLLIAASIFIFFLLNLLLGSVSIPIGSVWNILWGGtDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQ 80
Cdd:PRK10577   6 SRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGP-DADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  81 TVFRNPLAGPSVLGISSGASLGVAFVVLLSGALGGvalsklgymgeVALSLAAVIGALSVMALIVYVSQKVKGN-VTLLI 159
Cdd:PRK10577  85 QVLRNPLASPTTLGVAAGAQLALVLATLFAPALLA-----------LASQLAAFAGGLLAAALVFALAGGKRLSpLRLVL 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 160 IGVMIGYVASAIIGVLKYFSvEEDIRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGL 239
Cdd:PRK10577 154 AGMVVSLYLGALTTLLLLFN-EQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGL 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 240 NIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAVPHLCRAIfHTSDHRILMPATLLAGASLALVCNLVARM--PGFEGAL 317
Cdd:PRK10577 233 AVSLTRLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLL-GARRLRARLPLSPLIGALLLLLTDQLVRLlaGVGGELL 311

                        330       340
                 ....*....|....*....|....
gi 547279235 318 PVNSVTALVGAPVVASVLFRKRKS 341
Cdd:PRK10577 312 PTGAVTALIGAPLLLWLLPRLRSA 335
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
58-339 1.50e-34

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 128.63  E-value: 1.50e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  58 RVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVLLSGALGGVALSKLGYMGEVAlslaavigA 137
Cdd:PRK09777  51 RLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMA--------G 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 138 LSVMALIVYVSQKVKgnvtLLIIGVMIGYVASAIIGVLkYFSVEEDIRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLS 217
Cdd:PRK09777 123 LILLKMLAGTHQPMK----LALTGVALSALWASLTDYL-MLSRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLS 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 218 FLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAVPHLCRAIFhTSDHRILMPATLLAG 297
Cdd:PRK09777 198 LSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLV-GGRHRRLLPVSALTG 276

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 547279235 298 ASLALVCNLVARMPGFEGALPVNSVTALVGAPVVASVLFRKR 339
Cdd:PRK09777 277 ALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-330 2.00e-32

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 121.51  E-value: 2.00e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  63 LTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAFVVLLSGALGGVALSklgymgevalSLAAVIGALSVMA 142
Cdd:cd06550    2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALG----------AFAFAGALAIALL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 143 LIVYVSQKVKGNVTLLIIGVMIGYVASAIIGVLKYFSvEEDIRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIK 222
Cdd:cd06550   72 VLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLS-DDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSR 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 223 TMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAVPHLCRAIFhTSDHRILMPATLLAGASLAL 302
Cdd:cd06550  151 KLNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLF-GRSHRYLLPLSALLGAILLL 229

                        250       260
                 ....*....|....*....|....*...
gi 547279235 303 VCNLVARMPgFEGALPVNSVTALVGAPV 330
Cdd:cd06550  230 LGDLLSRTL-LPSELPVGPVTALLGAPY 256
btuC PRK09535
cobalamin ABC transporter permease BtuC;
27-329 2.15e-32

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 124.09  E-value: 2.15e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  27 GSVSIPIGSVWNILWGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLG-VAF 105
Cdd:PRK09535  64 VGLSLPAPDLEYASPFSFAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGaVAA 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 106 VVLLSGALGGvalsklgymgevaLSLAAVIGALsVMALIVYVSQKVKGNV---TLLIIGVMIGYVASAIIGVLKYFSvEE 182
Cdd:PRK09535 144 IVLPLAVPFG-------------LQAAAFAGAL-VAAFGVYAIATENGRTpvaTLLLAGVAVQTFLGAVISYLLLHS-GE 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 183 DIRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAY 262
Cdd:PRK09535 209 SLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAV 288

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 547279235 263 CGPIMFIGLAVPHLCRAIFhTSDHRILMPATLLAGASLALVCNLVARMPGFEgaLPVNSVTALVGAP 329
Cdd:PRK09535 289 AGVIGFVGLIVPHVMRLLV-GPDHRILLPTSALAGASFLVATDTVARSGPAE--VPVGIVTAALGAP 352
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 27-341 2.70e-32

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 123.04  E-value: 2.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   27 GSVSIPIGSVWNIL---------WGGTDESIIWQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISS 97
Cdd:TIGR03869  13 GPADISVGEVWRSVaahlgrgegFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSS 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   98 GASLGVAFVVLLSGAlggvalsklgymgeVALSLAAVIGALSVMALIVYVSqKVKGNVT---LLIIGVMIGYVASAIIGV 174
Cdd:TIGR03869  93 GASLGAVAVLVLGVA--------------VLLPVAAFAGALLALAATLGLA-RTLGTLTptrTILAGLAVSQLCAAVTSF 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  175 LKYFSVEED-IRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSG 253
Cdd:TIGR03869 158 VIFWSATGDsYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVA 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  254 VLVAIVTAYCGPIMFIGLAVPHLCRaIFHTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVAS 333
Cdd:TIGR03869 238 LLTGALVSVSGAIGFVGLILPHAVR-LLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAV 316


                  ....*...
gi 547279235  334 VLFRKRKS 341
Cdd:TIGR03869 317 LLYRSRSG 324
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
28-340 1.81e-31

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 120.57  E-value: 1.81e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  28 SVSIPIGSVWNILWGGTDESIIwQNIIWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSGASLGVAfvv 107
Cdd:PRK11228  22 AIPISAADALNALLPGHTPTLP-EALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMA--- 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 108 lLSGALGGVALSklGYMGEVALSLAAVIGALSVMALIVYVSQKVKGNvTLLIIGVMIGYVASAIIGvLKYFSVEEDIRAY 187
Cdd:PRK11228  98 -LTSALSPTPFA--GYSLAFIAACGGGLSWLLVMTAGGGWRHTHDRN-RLILAGIALSALCMALTR-ITLLLAEDHAYGI 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 188 VIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIM 267
Cdd:PRK11228 173 FYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVA 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 547279235 268 FIGLAVPHLCRAiFHTSDHRILMPATLLAGASLALVCNLVARMPGFEGALPVNSVTALVGAPVVasVLFRKRK 340
Cdd:PRK11228 253 FIGLLVPHLARF-WIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCF--VWLARRR 322
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
4-339 4.87e-25

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 103.25  E-value: 4.87e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   4 PTVPLMLLIAASIFIFFllnlllGSVSIPIGSVWNILWGGTDESIIwqNIIWKSRVPQALTALVAGAGLSISGLQMQTVF 83
Cdd:PRK10441  14 PGLLLLLIIATALSLLI------GAKSLPASVVLEALSGTCQSADC--TIVLDARLPRTLAGLLAGGALGLAGALMQTLT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  84 RNPLAGPSVLGISSGASlgvaFVVLLSGALGGVAlSKLGYMgevalsLAAVIGALsVMALIVYVSQKVKGN----VTLLI 159
Cdd:PRK10441  86 RNPLADPGLLGVNAGAS----FAIVLGAALFGYS-SAQEQL------AMAFAGAL-VASLIVAFTGSQGGGqlspVRLTL 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 160 IGVMIGYVASAIIG--VLKYFSVEEDIRayvIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNL 237
Cdd:PRK10441 154 AGVALAAVLEGLTSgiALLNPDVYDQLR---FWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATAL 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 238 GLNIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAVPHLCRAIFhTSDHRILMPATLLAGASLALVCNLVARMPgFEGAL 317
Cdd:PRK10441 231 GSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLV-GADHRWSLPVTLLATPALLLFADIIGRLL-VPGEL 308

                        330       340
                 ....*....|....*....|..
gi 547279235 318 PVNSVTALVGAPVVASVLFRKR 339
Cdd:PRK10441 309 RVSVVSAFIGAPVLIFLVRRKT 330
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
2-337 1.52e-23

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 99.01  E-value: 1.52e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235   2 KRPTVPLMLLIAASIFIFFLLNLLlGSVSIPIGSVWNILWGGTDESIiwQNIIWKSRVPQALTALVAGAGLSISGLQMQT 81
Cdd:PRK10440   6 RRLLITCLLLLAACVAAGLWGLRS-GAVTLETSQVFAALMGDAPRSM--TMVVTEWRLPRVLMALLIGAALGVSGAIFQS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  82 VFRNPLAGPSVLGISSGASLGVAFVVLLSGAlggvalsklgymGEVALSLAAVIGALsVMALIVYVSQKVKGNVT--LLI 159
Cdd:PRK10440  83 LMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQ------------DLTAIALAAMAGGI-VTSLLVWLLAWRNGIDTfrLII 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 160 IGVMIGYVASAIIGVLKYFSVEEDIRAYVIWGLGSFARVSGDQMTLFVCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGL 239
Cdd:PRK10440 150 IGIGVRAMLVAFNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGV 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 240 NIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAVPHLCRAIFHTSDHRILMPAtlLAGASLALVCNLVARMPGFEGALPV 319
Cdd:PRK10440 230 SVERSRLLLMLVAVVLTAAATALAGPISFIALVAPHIARRLSGTARWGLTQAA--LCGALLLLAADLCAQQLFMPYQLPV 307

                        330
                 ....*....|....*...
gi 547279235 320 NSVTALVGAPVVASVLFR 337
Cdd:PRK10440 308 GVVTVSLGGIYLIVLLIQ 325
CeuC COG4605
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 54-341 2.04e-20

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443655  Cd Length: 317  Bit Score: 90.17  E-value: 2.04e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235  54 IWKSRVPQALTALVAGAGLSISGLQMQTVFRNPLAGPSVLGISSgasLGVAFVVLLSGALGGVALSKLGYMGEVALSLAA 133
Cdd:COG4605   35 ILPRRGTKLAAMLLVAIAIAVSTVLFQTITNNRILTPSIMGFDS---LYVLIQTLLVFFLGSAGLAALNPLLNFLLEVAL 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 134 VIGAlsVMALIVYVSQKVKGNVTLLI-IGVMIGYVASAIIGVLKY------FSVEEDIrayviwGLGSFARVSGDQMTLF 206
Cdd:COG4605  112 MVGF--SLLLYRWLFRGGRRNLHLLLlVGVVLGTLFRSLSSFLQRlidpneFDVLQDR------LFASFNNVNTDLLLIA 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 547279235 207 VCIMVVLIPLSFLLIKTMNLMLLGDGYARNLGLNIKRARLLVISCSGVLVAIVTAYCGPIMFIGLAVPHLCRAIFHTSDH 286
Cdd:COG4605  184 AVIVLLALLLLWRLRRRLDVLALGRDQAINLGVDYRRVVRRLLILVAVLVAVSTALVGPITFLGLLVANLAYQLFGTYRH 263

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 547279235 287 RILMPATLLAGAsLALVCN--LVARMPGFEGALPVnsVTALVGAPVVASVLFRKRKS 341
Cdd:COG4605  264 RYLLPAAALIGV-IALVGGqfVVEHVFNFSTTLSV--IIEFVGGIYFLYLLLRKRRL 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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