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Conserved domains on  [gi|546197836|ref|WP_021828257|]
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histone H1-like DNA-binding protein Hc2 [Chlamydia gallinacea]

Protein Classification

1,4-alpha-glucan-branching protein; Ku protein( domain architecture ID 10538371)

1,4-alpha-glucan-branching protein transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain| Ku protein, together with LigD, forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity; binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA; recruits and stimulates the ligase activity of LigD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 1-187 3.17e-30

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


:

Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 109.10  E-value: 3.17e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836    1 MLGVQKKRSSKKTATK--VVRKPAAKKSTARKATARKT-VRKATSRKSVAKKTATKKPAAKRSTARKATARKTV-RKATS 76
Cdd:pfam07382   1 MLGAQKKRSSKKTAAKkaAVRKPAAKKAAAKKTVVRKVaAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVaKKPVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   77 RKSVAKKTATKKPAAKKSTARKATARKTV-RKATSRKSVAKKTATKKPAAKKVVSKTATrkcatkSVCCKNHKHTAACKQ 155
Cdd:pfam07382  81 KKAVAKKATAKKVAAKKVVAKKTVAKKAAaKKPAAKKAVAKKAVARKPAAKKAVAKKAA------STCHKNHKHTAACKR 154

                         170       180       190
                  ....*....|....*....|....*....|...
gi 546197836  156 VCSSSAKR-RYSSKGRVRTAHGWRQQLMKLVAR 187
Cdd:pfam07382 155 VASSSATRaACGSKSRVNPAHGWRQQLMKLVSR 187
 
Name Accession Description Interval E-value
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 1-187 3.17e-30

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 109.10  E-value: 3.17e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836    1 MLGVQKKRSSKKTATK--VVRKPAAKKSTARKATARKT-VRKATSRKSVAKKTATKKPAAKRSTARKATARKTV-RKATS 76
Cdd:pfam07382   1 MLGAQKKRSSKKTAAKkaAVRKPAAKKAAAKKTVVRKVaAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVaKKPVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   77 RKSVAKKTATKKPAAKKSTARKATARKTV-RKATSRKSVAKKTATKKPAAKKVVSKTATrkcatkSVCCKNHKHTAACKQ 155
Cdd:pfam07382  81 KKAVAKKATAKKVAAKKVVAKKTVAKKAAaKKPAAKKAVAKKAVARKPAAKKAVAKKAA------STCHKNHKHTAACKR 154

                         170       180       190
                  ....*....|....*....|....*....|...
gi 546197836  156 VCSSSAKR-RYSSKGRVRTAHGWRQQLMKLVAR 187
Cdd:pfam07382 155 VASSSATRaACGSKSRVNPAHGWRQQLMKLVSR 187
histone_lik_HC2 NF038052
histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and ...
 1-187 5.08e-29

histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and Arg-rich histone H1-like protein Hc2, as found in the genus Chlamydia.


Pssm-ID: 468327 [Multi-domain]  Cd Length: 201  Bit Score: 106.53  E-value: 5.08e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   1 MLGVQKKRSSKKTATK--VVRKPAAKKSTARKATARKT-VRKATSRKSVAKKT-ATKKPAAKRSTARKATARK-TVRKAT 75
Cdd:NF038052   1 MLGVQKKRSTRKTAARktVVRKPAAKKTAAKKAPVRKVaAKKTVARKTVAKKTvAARKPVAKKATAKKAPVRKvAAKKTV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  76 SRKSVAKKT-ATKKPAAKKSTARKATARK-TVRKATSRKSVAKKTAT-KKPAAKKVVSKTATRKCATKSVCCKNHKHTAA 152
Cdd:NF038052  81 ARKTVAKKTvAARKPVAKKATAKKAPVRKvAAKKTVARKTVAKKTVAaLKPAAKRVASTKKSSVAVKAGVCMKKHKHTAA 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 546197836 153 CK-------QVCSSSAKRRySSKGRVRTAHGWRQQLMKLVAR 187
Cdd:NF038052 161 CGrvaasgvKVCASAAKRK-TNPNRSRTAHSWRQQLMKLVAR 201
valS PRK14900
valyl-tRNA synthetase; Provisional
 20-140 2.35e-14

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 70.41  E-value: 2.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   20 KPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAA--------KRSTARKATARKTVRKATSRKSVAKKTATKKPAA 91
Cdd:PRK14900  923 KPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAAtavasgieKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPA 1002

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 546197836   92 KKSTARKATARKTVRKATSRKSVAKKTATKKPAAKKVVSKTATRKCATK 140
Cdd:PRK14900 1003 KKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRK 1051
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
56-108 2.13e-08

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 52.90  E-value: 2.13e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 546197836  56 AAKRSTArKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKATARKTVRKA 108
Cdd:COG1754  841 AEKRAKG-PAKKKKAAKKAAAKKAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
 
Name Accession Description Interval E-value
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 1-187 3.17e-30

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 109.10  E-value: 3.17e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836    1 MLGVQKKRSSKKTATK--VVRKPAAKKSTARKATARKT-VRKATSRKSVAKKTATKKPAAKRSTARKATARKTV-RKATS 76
Cdd:pfam07382   1 MLGAQKKRSSKKTAAKkaAVRKPAAKKAAAKKTVVRKVaAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVaKKPVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   77 RKSVAKKTATKKPAAKKSTARKATARKTV-RKATSRKSVAKKTATKKPAAKKVVSKTATrkcatkSVCCKNHKHTAACKQ 155
Cdd:pfam07382  81 KKAVAKKATAKKVAAKKVVAKKTVAKKAAaKKPAAKKAVAKKAVARKPAAKKAVAKKAA------STCHKNHKHTAACKR 154

                         170       180       190
                  ....*....|....*....|....*....|...
gi 546197836  156 VCSSSAKR-RYSSKGRVRTAHGWRQQLMKLVAR 187
Cdd:pfam07382 155 VASSSATRaACGSKSRVNPAHGWRQQLMKLVSR 187
histone_lik_HC2 NF038052
histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and ...
 1-187 5.08e-29

histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and Arg-rich histone H1-like protein Hc2, as found in the genus Chlamydia.


Pssm-ID: 468327 [Multi-domain]  Cd Length: 201  Bit Score: 106.53  E-value: 5.08e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   1 MLGVQKKRSSKKTATK--VVRKPAAKKSTARKATARKT-VRKATSRKSVAKKT-ATKKPAAKRSTARKATARK-TVRKAT 75
Cdd:NF038052   1 MLGVQKKRSTRKTAARktVVRKPAAKKTAAKKAPVRKVaAKKTVARKTVAKKTvAARKPVAKKATAKKAPVRKvAAKKTV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  76 SRKSVAKKT-ATKKPAAKKSTARKATARK-TVRKATSRKSVAKKTAT-KKPAAKKVVSKTATRKCATKSVCCKNHKHTAA 152
Cdd:NF038052  81 ARKTVAKKTvAARKPVAKKATAKKAPVRKvAAKKTVARKTVAKKTVAaLKPAAKRVASTKKSSVAVKAGVCMKKHKHTAA 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 546197836 153 CK-------QVCSSSAKRRySSKGRVRTAHGWRQQLMKLVAR 187
Cdd:NF038052 161 CGrvaasgvKVCASAAKRK-TNPNRSRTAHSWRQQLMKLVAR 201
valS PRK14900
valyl-tRNA synthetase; Provisional
 20-140 2.35e-14

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 70.41  E-value: 2.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   20 KPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAA--------KRSTARKATARKTVRKATSRKSVAKKTATKKPAA 91
Cdd:PRK14900  923 KPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAAtavasgieKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPA 1002

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 546197836   92 KKSTARKATARKTVRKATSRKSVAKKTATKKPAAKKVVSKTATRKCATK 140
Cdd:PRK14900 1003 KKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRK 1051
valS PRK14900
valyl-tRNA synthetase; Provisional
 12-112 1.08e-12

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 65.40  E-value: 1.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   12 KTATKVVRKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAA 91
Cdd:PRK14900  957 QQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAA 1036

                          90       100
                  ....*....|....*....|.
gi 546197836   92 KKStarkatARKTVRKATSRK 112
Cdd:PRK14900 1037 KKA------AKKPARKAAGRK 1051
valS PRK14900
valyl-tRNA synthetase; Provisional
 3-93 4.11e-11

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 60.78  E-value: 4.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836    3 GVQKKRSS-KKTATKVVRKPAAKKStarkATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKAtSRKSVA 81
Cdd:PRK14900  966 GIEKVAEAvRKTVRRSVKKAAATRA----AMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKP-AAKKAA 1040

                          90
                  ....*....|..
gi 546197836   82 KKTATKKPAAKK 93
Cdd:PRK14900 1041 KKPARKAAGRKA 1052
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
56-108 2.13e-08

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 52.90  E-value: 2.13e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 546197836  56 AAKRSTArKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKATARKTVRKA 108
Cdd:COG1754  841 AEKRAKG-PAKKKKAAKKAAAKKAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
81-132 1.20e-07

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 50.58  E-value: 1.20e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 546197836  81 AKKTATKKPAAKKSTARKATARKTVRKatsrKSVAKKTATKKPAAKKVVSKT 132
Cdd:COG1754  845 AKGPAKKKKAAKKAAAKKAAAKKTAAK----KAAAKKAAAKKAAAKKAAKKA 892
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
22-74 1.62e-07

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 50.20  E-value: 1.62e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 546197836  22 AAKKSTARKATARKtvrkATSRKSVAKKTATKKPAAKRSTARKATARKTVRKA 74
Cdd:COG1754  844 RAKGPAKKKKAAKK----AAAKKAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 4-127 2.20e-07

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 49.99  E-value: 2.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   4 VQKKRSSKKTATKVVRKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKK 83
Cdd:PRK05901   5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAK 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 546197836  84 TATKKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKK 127
Cdd:PRK05901  85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
67-127 3.07e-07

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 49.43  E-value: 3.07e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 546197836  67 ARKTVRKATSRKSVAKKTATKKPAAKKSTARKATARKTvrkatsrksVAKKTATKKPAAKK 127
Cdd:COG1754  841 AEKRAKGPAKKKKAAKKAAAKKAAAKKTAAKKAAAKKA---------AAKKAAAKKAAKKA 892
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
33-93 1.67e-06

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 47.50  E-value: 1.67e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 546197836  33 ARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTvrkatsrksVAKKTATKKPAAKK 93
Cdd:COG1754  841 AEKRAKGPAKKKKAAKKAAAKKAAAKKTAAKKAAAKKA---------AAKKAAAKKAAKKA 892
valS PRK14900
valyl-tRNA synthetase; Provisional
 36-178 6.80e-06

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 45.75  E-value: 6.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   36 TVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAA---KKSTARKATARKTVRKATSRK 112
Cdd:PRK14900  910 SARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASgieKVAEAVRKTVRRSVKKAAATR 989

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 546197836  113 SV-AKKTATKKPAAKKVVSKTATRKCATKSVCCKNhkhtAACKQVCSSSAKRRYSSKGrVRTAHGWR 178
Cdd:PRK14900  990 AAmKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKK----APAKKVARKPAAKKAAKKP-ARKAAGRK 1051
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 30-141 1.58e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 44.22  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  30 KATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKATARKTVRKAT 109
Cdd:PRK05901   4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAA 83

                         90       100       110
                 ....*....|....*....|....*....|..
gi 546197836 110 srKSVAKKTATKKPAAKKVVSKTATRKCATKS 141
Cdd:PRK05901  84 --KAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 22-134 3.24e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 43.44  E-value: 3.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  22 AAKKSTARKATARKTVRKATSRksVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKATA 101
Cdd:PRK05901   1 MTTASTKAELAAEEEAKKKLKK--LAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKK 78

                         90       100       110
                 ....*....|....*....|....*....|...
gi 546197836 102 RKTVRKATSRKSVAKKTATKKPAAKKVVSKTAT 134
Cdd:PRK05901  79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 35-140 3.59e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 43.44  E-value: 3.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  35 KTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKATARKTVRKATSRKSV 114
Cdd:PRK05901   3 TASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTA 82

                         90       100
                 ....*....|....*....|....*.
gi 546197836 115 AKKTATKKPAAKKVVSKTATRKCATK 140
Cdd:PRK05901  83 AKAAAAKAPAKKKLKDELDSSKKAEK 108
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 39-142 1.00e-04

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 41.90  E-value: 1.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  39 KATSRKSVAKKTATKK--PAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKATARKTVRKATSRKSVAK 116
Cdd:PRK05901   4 ASTKAELAAEEEAKKKlkKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAA 83

                         90       100
                 ....*....|....*....|....*.
gi 546197836 117 KTATKKPAAKKVVSKTATRKCATKSV 142
Cdd:PRK05901  84 KAAAAKAPAKKKLKDELDSSKKAEKK 109
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
3-50 1.31e-04

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 41.73  E-value: 1.31e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 546197836   3 GVQKKRSSKKTATKvvrKPAAKKSTARKATARKTVRKATSRKSVAKKT 50
Cdd:COG1754  848 PAKKKKAAKKAAAK---KAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
PRK13808 PRK13808
adenylate kinase; Provisional
 1-140 1.33e-04

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 41.41  E-value: 1.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   1 MLGVQKKRSSKKTATKVVRKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSV 80
Cdd:PRK13808 191 LAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKA 270

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  81 AKKTATKKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKKVVSKTATRKCATK 140
Cdd:PRK13808 271 AKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTK 330
PRK13808 PRK13808
adenylate kinase; Provisional
 6-127 8.99e-04

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 39.10  E-value: 8.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   6 KKRSSKKTATKVVRKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTA 85
Cdd:PRK13808 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATK 290

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 546197836  86 TKKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKK 127
Cdd:PRK13808 291 GKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
PRK13808 PRK13808
adenylate kinase; Provisional
 6-136 2.76e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 37.56  E-value: 2.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836   6 KKRSSKKTATKVVRKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKA--TARKTVRKATSRKSVAKK 83
Cdd:PRK13808 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKAlkKAAKAVKKAAKKAAKAAA 279

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 546197836  84 TATKKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKKVVSKTATRK 136
Cdd:PRK13808 280 KAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
PRK12472 PRK12472
hypothetical protein; Provisional
 21-152 3.52e-03

hypothetical protein; Provisional


Pssm-ID: 237110 [Multi-domain]  Cd Length: 508  Bit Score: 37.54  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  21 PAAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKAT 100
Cdd:PRK12472 180 PKAEALAAAPARAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKAR 259

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 546197836 101 ARKTVRKATSR-KSVAKKTATKKPAAKKVVSKTATRKCATKSVCCKNHKHTAA 152
Cdd:PRK12472 260 AEERQQKAAQQaAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKA 312
PRK13808 PRK13808
adenylate kinase; Provisional
 45-174 3.93e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 37.17  E-value: 3.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  45 SVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTATKKPAAKKSTARKATARKTVRKATSRKSVAKKTATKKPA 124
Cdd:PRK13808 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAA 275

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 546197836 125 AKKVVSKTATRKCATKSVCCKNHKHTAACKQVCSSSAKRRYSSKGRVRTA 174
Cdd:PRK13808 276 KAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKA 325
PRK13808 PRK13808
adenylate kinase; Provisional
 22-142 4.56e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 36.79  E-value: 4.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  22 AAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAKKTAtKKPAAKKSTARKATA 101
Cdd:PRK13808 193 AVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTA-KKALKKAAKAVKKAA 271

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 546197836 102 RKTVRKATSRKSVAKKTATKKPAAKKVVSKTATRKCATKSV 142
Cdd:PRK13808 272 KKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKAT 312
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 22-140 4.98e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 36.85  E-value: 4.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836  22 AAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTA---RKATARKTVRKATSRKSVAKKTATKKPAAKKSTARK 98
Cdd:PRK05035 473 HKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARpdnSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAA 552

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 546197836  99 ATARKTVRKA---TSRKSVAKKTATKKPAAKKVVSKTATRKCATK 140
Cdd:PRK05035 553 AIARAKAKKAaqqAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQ 597
PTZ00121 PTZ00121
MAEBL; Provisional
 5-138 6.76e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 36.66  E-value: 6.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 546197836    5 QKKRSSKKTATKVVRKP--AAKKSTARKATARKTVRKATSRKSVAKKTATKKPAAKRSTARKATARKTVRKATSRKSVAK 82
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 546197836   83 KTATKKPAAKKSTARKATARKTVRKATSRKSV--AKKTATKKPAAKKVVSKTATRKCA 138
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKAdeAKKKAEEAKKADEAKKKAEEAKKA 1459
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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