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Conserved domains on  [gi|545234896|ref|WP_021534249|]
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MULTISPECIES: phage tail tube protein [Enterobacteriaceae]

Protein Classification

phage tail tube protein( domain architecture ID 10566278)

phage tail tube protein (TTP) such as Escherichia virus Mu TTP that polymerizes to make up the central tail tube that is surrounded by the tail sheath protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tail_tube pfam10618
Phage tail tube protein; This bacterial family of proteins contains phage tail tube proteins ...
 1-117 1.15e-34

Phage tail tube protein; This bacterial family of proteins contains phage tail tube proteins related to the Mu phage protein Swiss:P79679. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.


:

Pssm-ID: 431398  Cd Length: 117  Bit Score: 115.45  E-value: 1.15e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545234896    1 MARIGGTCYFKIDGQQLSLTGGIEVPMNRTVNDDIIGLDGSVDRKETHRAPYVKGTFKVPKNFPVGKITSSDEMTITAEL 80
Cdd:pfam10618   1 MNQIAGTAYIRVDGKELPTKGGATLNPGGVKRETVVGGDGVHGYSEKPKAPFIECTIRDTRGLDVEDLNNITNATVTFEL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 545234896   81 ANGQVYVLSSAWLHGEANHNAEEGTVDLEFHGEEGDY 117
Cdd:pfam10618  81 DNGKTYVLRGAWTVEEPELNSDDGTIELKFEGDSVEE 117
 
Name Accession Description Interval E-value
Tail_tube pfam10618
Phage tail tube protein; This bacterial family of proteins contains phage tail tube proteins ...
 1-117 1.15e-34

Phage tail tube protein; This bacterial family of proteins contains phage tail tube proteins related to the Mu phage protein Swiss:P79679. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.


Pssm-ID: 431398  Cd Length: 117  Bit Score: 115.45  E-value: 1.15e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545234896    1 MARIGGTCYFKIDGQQLSLTGGIEVPMNRTVNDDIIGLDGSVDRKETHRAPYVKGTFKVPKNFPVGKITSSDEMTITAEL 80
Cdd:pfam10618   1 MNQIAGTAYIRVDGKELPTKGGATLNPGGVKRETVVGGDGVHGYSEKPKAPFIECTIRDTRGLDVEDLNNITNATVTFEL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 545234896   81 ANGQVYVLSSAWLHGEANHNAEEGTVDLEFHGEEGDY 117
Cdd:pfam10618  81 DNGKTYVLRGAWTVEEPELNSDDGTIELKFEGDSVEE 117
 
Name Accession Description Interval E-value
Tail_tube pfam10618
Phage tail tube protein; This bacterial family of proteins contains phage tail tube proteins ...
 1-117 1.15e-34

Phage tail tube protein; This bacterial family of proteins contains phage tail tube proteins related to the Mu phage protein Swiss:P79679. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.


Pssm-ID: 431398  Cd Length: 117  Bit Score: 115.45  E-value: 1.15e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545234896    1 MARIGGTCYFKIDGQQLSLTGGIEVPMNRTVNDDIIGLDGSVDRKETHRAPYVKGTFKVPKNFPVGKITSSDEMTITAEL 80
Cdd:pfam10618   1 MNQIAGTAYIRVDGKELPTKGGATLNPGGVKRETVVGGDGVHGYSEKPKAPFIECTIRDTRGLDVEDLNNITNATVTFEL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 545234896   81 ANGQVYVLSSAWLHGEANHNAEEGTVDLEFHGEEGDY 117
Cdd:pfam10618  81 DNGKTYVLRGAWTVEEPELNSDDGTIELKFEGDSVEE 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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