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Conserved domains on  [gi|544872516|ref|WP_021285819|]
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IS21-like element helper ATPase IstB, partial [Staphylococcus aureus]

Protein Classification

ATP-binding protein( domain architecture ID 17609121)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain; similar to the ATPase subunit of IS21, IstB, that assembles into a clamshell-shaped decamer that sandwiches DNA to facilitate efficient transposition

CATH:  3.40.50.300
Gene Ontology:  GO:0005524

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 2-172 8.38e-82

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


:

Pssm-ID: 439516  Cd Length: 232  Bit Score: 241.99  E-value: 8.38e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:NF038214  62 LEDFDFTAAPGLDKAQIRELATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGR 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:NF038214 142 LGRLLRRLARYDLLIIDELGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHIL 221

                        170
                 ....*....|.
gi 544872516 162 KITGESYRLKD 172
Cdd:NF038214 222 ELKGESYRLKE 232
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 2-172 8.38e-82

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 241.99  E-value: 8.38e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:NF038214  62 LEDFDFTAAPGLDKAQIRELATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGR 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:NF038214 142 LGRLLRRLARYDLLIIDELGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHIL 221

                        170
                 ....*....|.
gi 544872516 162 KITGESYRLKD 172
Cdd:NF038214 222 ELKGESYRLKE 232
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
2-172 6.47e-80

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 237.37  E-value: 6.47e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:COG1484   71 LEDFDFDAQPGLDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGR 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:COG1484  151 LERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHII 230

                        170
                 ....*....|.
gi 544872516 162 KITGESYRLKD 172
Cdd:COG1484  231 ELKGESYRLKE 241
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 2-171 4.35e-63

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 194.59  E-value: 4.35e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516    2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:pfam01695  64 LEDFDFTFAPGLDQRIVAELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGK 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:pfam01695 144 LTRKLQQLLKPDVLILDEWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIV 223

                         170
                  ....*....|
gi 544872516  162 KITGESYRLK 171
Cdd:pfam01695 224 PIKGESYRLK 233
PRK09183 PRK09183
transposase/IS protein; Provisional
 2-172 9.55e-61

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 189.53  E-value: 9.55e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:PRK09183  74 FEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGR 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQ-LSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFS-NKIVSAAIIDRLVHHSK 159
Cdd:PRK09183 154 YKTTLQRgVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAgDAALTSAMLDRLLHHSH 233

                        170
                 ....*....|...
gi 544872516 160 VFKITGESYRLKD 172
Cdd:PRK09183 234 VVQIKGESYRLKQ 246
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 14-136 4.42e-07

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 47.14  E-value: 4.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  14 NQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGIINKT----LKQL 89
Cdd:cd00009    3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRllfeLAEK 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 544872516  90 SRIELLIIDEIGYTPITKEQA--DLFYQLMSLRYEWKST--IITTNIPFSS 136
Cdd:cd00009   83 AKPGVLFIDEIDSLSRGAQNAllRVLETLNDLRIDRENVrvIGATNRPLLG 133
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 2-172 8.38e-82

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 241.99  E-value: 8.38e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:NF038214  62 LEDFDFTAAPGLDKAQIRELATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGR 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:NF038214 142 LGRLLRRLARYDLLIIDELGYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHIL 221

                        170
                 ....*....|.
gi 544872516 162 KITGESYRLKD 172
Cdd:NF038214 222 ELKGESYRLKE 232
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
2-172 6.47e-80

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 237.37  E-value: 6.47e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:COG1484   71 LEDFDFDAQPGLDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGR 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:COG1484  151 LERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHII 230

                        170
                 ....*....|.
gi 544872516 162 KITGESYRLKD 172
Cdd:COG1484  231 ELKGESYRLKE 241
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 2-171 4.35e-63

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 194.59  E-value: 4.35e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516    2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:pfam01695  64 LEDFDFTFAPGLDQRIVAELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGK 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:pfam01695 144 LTRKLQQLLKPDVLILDEWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIV 223

                         170
                  ....*....|
gi 544872516  162 KITGESYRLK 171
Cdd:pfam01695 224 PIKGESYRLK 233
PRK09183 PRK09183
transposase/IS protein; Provisional
 2-172 9.55e-61

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 189.53  E-value: 9.55e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:PRK09183  74 FEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGR 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQ-LSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFS-NKIVSAAIIDRLVHHSK 159
Cdd:PRK09183 154 YKTTLQRgVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAgDAALTSAMLDRLLHHSH 233

                        170
                 ....*....|...
gi 544872516 160 VFKITGESYRLKD 172
Cdd:PRK09183 234 VVQIKGESYRLKQ 246
PRK06526 PRK06526
transposase; Provisional
 2-172 3.98e-59

transposase; Provisional


Pssm-ID: 180607  Cd Length: 254  Bit Score: 185.07  E-value: 3.98e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGI 81
Cdd:PRK06526  70 LEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGR 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  82 INKTLKQLSRIELLIIDEIGYTPITKEQADLFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHSKVF 161
Cdd:PRK06526 150 LQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVI 229

                        170
                 ....*....|.
gi 544872516 162 KITGESYRLKD 172
Cdd:PRK06526 230 SLKGDSYRLKD 240
PRK08181 PRK08181
transposase; Validated
 2-169 1.65e-30

transposase; Validated


Pssm-ID: 136670 [Multi-domain]  Cd Length: 269  Bit Score: 111.94  E-value: 1.65e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   2 LHDFDFMFQPSINQQEILTLKSMH-FLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKG 80
Cdd:PRK08181  77 LDSFDFEAVPMVSKAQVMAIAAGDsWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARREL 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  81 IINKTLKQLSRIELLIIDEIGYtpITKEQAD--LFYQLMSLRYEWKSTIITTNIPFSSWGESFSNKIVSAAIIDRLVHHS 158
Cdd:PRK08181 157 QLESAIAKLDKFDLLILDDLAY--VTKDQAEtsVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHA 234

                        170
                 ....*....|.
gi 544872516 159 KVFKITGESYR 169
Cdd:PRK08181 235 TIFEMNVESYR 245
PRK08116 PRK08116
hypothetical protein; Validated
 28-171 4.55e-11

hypothetical protein; Validated


Pssm-ID: 236153 [Multi-domain]  Cd Length: 268  Bit Score: 59.65  E-value: 4.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  28 EDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGII---NKTLKQLSRIELLIIDEIGY-- 102
Cdd:PRK08116 112 KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKedeNEIIRSLVNADLLILDDLGAer 191

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544872516 103 -TPITKEQadlFYQLMSLRY-EWKSTIITTNIPFsswgESFSNKIvSAAIIDRLVHHSKVFKITGESYRLK 171
Cdd:PRK08116 192 dTEWAREK---VYNIIDSRYrKGLPTIVTTNLSL----EELKNQY-GKRIYDRILEMCTPVENEGKSYRKE 254
PRK06835 PRK06835
DNA replication protein DnaC; Validated
 25-178 1.66e-08

DNA replication protein DnaC; Validated


Pssm-ID: 235871 [Multi-domain]  Cd Length: 329  Bit Score: 52.98  E-value: 1.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  25 HFLEDSINICFLGNSGVGKTHLA--------------ISLGIEACKQNIKT-RFYTFKELIDLLtvsdsKGIINktlkql 89
Cdd:PRK06835 178 NFDKNNENLLFYGNTGTGKTFLSnciakelldrgksvIYRTADELIEILREiRFNNDKELEEVY-----DLLIN------ 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  90 srIELLIIDEIGYTPITKEQADLFYQLMSLRY-EWKSTIITTNIPFSSWGESFSNKIVSaaiidRLVHHSKVFKITGESY 168
Cdd:PRK06835 247 --CDLLIIDDLGTEKITEFSKSELFNLINKRLlRQKKMIISTNLSLEELLKTYSERISS-----RLLGNFTLLKFYGEDI 319

                        170
                 ....*....|
gi 544872516 169 RLKDYKTEKS 178
Cdd:PRK06835 320 RIKKNLQKKN 329
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 14-136 4.42e-07

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 47.14  E-value: 4.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  14 NQQEILTLKSMHFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGIINKT----LKQL 89
Cdd:cd00009    3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRllfeLAEK 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 544872516  90 SRIELLIIDEIGYTPITKEQA--DLFYQLMSLRYEWKST--IITTNIPFSS 136
Cdd:cd00009   83 AKPGVLFIDEIDSLSRGAQNAllRVLETLNDLRIDRENVrvIGATNRPLLG 133
PRK12377 PRK12377
putative replication protein; Provisional
 25-155 1.23e-04

putative replication protein; Provisional


Pssm-ID: 183482 [Multi-domain]  Cd Length: 248  Bit Score: 41.36  E-value: 1.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  25 HFLEDSINICFLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLLTVS-DSKGIINKTLKQLSRIELLIIDEIGYT 103
Cdd:PRK12377  96 ELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESyDNGQSGEKFLQELCKVDLLVLDEIGIQ 175

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 544872516 104 PITKEQADLFYQLMSLRY-EWKSTIITTNIPFSSWGESFSNKivsaaIIDRLV 155
Cdd:PRK12377 176 RETKNEQVVLNQIIDRRTaSMRSVGMLTNLNHEAMSTLLGER-----VMDRMT 223
Bac_DnaA pfam00308
Bacterial dnaA protein;
32-133 5.40e-04

Bacterial dnaA protein;


Pssm-ID: 278724 [Multi-domain]  Cd Length: 219  Bit Score: 39.23  E-value: 5.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516   32 NICFL-GNSGVGKTHL--AISLGIEACKQNIKTRFYTFKELIDLLTVSDSKGIINKTLKQLSRIELLIIDEIGYTpITKE 108
Cdd:pfam00308  35 NPLFIyGGVGLGKTHLlhAIGNYALQNAPNLRVVYLTAEEFLNDFVDAIRDNKTNQFKEKYRNVDVLLIDDIQFL-AGKE 113

                          90       100
                  ....*....|....*....|....*..
gi 544872516  109 --QADLFYQLMSLRYEWKSTIITTNIP 133
Cdd:pfam00308 114 gtQEEFFHTFNALHESGKQIVFSSDRP 140
PRK06921 PRK06921
hypothetical protein; Provisional
 33-132 1.65e-03

hypothetical protein; Provisional


Pssm-ID: 180750 [Multi-domain]  Cd Length: 266  Bit Score: 37.84  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  33 ICFLGNSGVGKTHLAISLGIEACKQ-NIKTRFYTFKELIDLLTvSDSKGIINKtLKQLSRIELLIIDEIGYTPITKEQAD 111
Cdd:PRK06921 120 IALLGQPGSGKTHLLTAAANELMRKkGVPVLYFPFVEGFGDLK-DDFDLLEAK-LNRMKKVEVLFIDDLFKPVNGKPRAT 197

                         90       100
                 ....*....|....*....|....*..
gi 544872516 112 LF-----YQLMSLRY-EWKSTIITTNI 132
Cdd:PRK06921 198 EWqieqmYSVLNYRYlNHKPILISSEL 224
COG2842 COG2842
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ...
 31-99 2.50e-03

Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];


Pssm-ID: 442090 [Multi-domain]  Cd Length: 254  Bit Score: 37.24  E-value: 2.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872516  31 INICFlGNSGVGKTHLAislgIEACKQNIKTRFYT----------FKELIDLLTVSDSKG----IINKTLKQLSR-IELL 95
Cdd:COG2842   52 IGVVY-GESGVGKTTAA----REYANRNPNVIYVTaspswtskelLEELAEELGIPAPPGtiadLRDRILERLAGtGRLL 126


                 ....
gi 544872516  96 IIDE 99
Cdd:COG2842  127 IIDE 130
PRK07952 PRK07952
DNA replication protein DnaC; Validated
 35-101 6.15e-03

DNA replication protein DnaC; Validated


Pssm-ID: 181180 [Multi-domain]  Cd Length: 244  Bit Score: 36.29  E-value: 6.15e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544872516  35 FLGNSGVGKTHLAISLGIEACKQNIKTRFYTFKELIDLL--TVSDSKGIINKTLKQLSRIELLIIDEIG 101
Cdd:PRK07952 104 FSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMkdTFSNSETSEEQLLNDLSNVDLLVIDEIG 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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