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Conserved domains on  [gi|527024088|ref|WP_020876531|]
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hypothetical protein [Desulfococcus multivorans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK03612 super family cl35213
polyamine aminopropyltransferase;
1-52 1.48e-18

polyamine aminopropyltransferase;


The actual alignment was detected with superfamily member PRK03612:

Pssm-ID: 235139 [Multi-domain]  Cd Length: 521  Bit Score: 77.57  E-value: 1.48e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 527024088   1 MVTQAAGPYFAPKAFRCLVKTIRSAGFPILPYHNQISTMREWGWVLGMKTRR 52
Cdd:PRK03612 411 LVVQSTSPYFAPKAFWSIEATLEAAGLATTPYHVNVPSFGEWGFVLAGAGAR 462
 
Name Accession Description Interval E-value
PRK03612 PRK03612
polyamine aminopropyltransferase;
1-52 1.48e-18

polyamine aminopropyltransferase;


Pssm-ID: 235139 [Multi-domain]  Cd Length: 521  Bit Score: 77.57  E-value: 1.48e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 527024088   1 MVTQAAGPYFAPKAFRCLVKTIRSAGFPILPYHNQISTMREWGWVLGMKTRR 52
Cdd:PRK03612 411 LVVQSTSPYFAPKAFWSIEATLEAAGLATTPYHVNVPSFGEWGFVLAGAGAR 462
COG4262 COG4262
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction ...
 1-27 6.39e-09

Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only];


Pssm-ID: 443404 [Multi-domain]  Cd Length: 426  Bit Score: 50.25  E-value: 6.39e-09
                         10        20
                 ....*....|....*....|....*..
gi 527024088   1 MVTQAAGPYFAPKAFRCLVKTIRSAGF 27
Cdd:COG4262  400 LVVQATSPYFAPKAFWCIAKTLEAAGF 426
 
Name Accession Description Interval E-value
PRK03612 PRK03612
polyamine aminopropyltransferase;
1-52 1.48e-18

polyamine aminopropyltransferase;


Pssm-ID: 235139 [Multi-domain]  Cd Length: 521  Bit Score: 77.57  E-value: 1.48e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 527024088   1 MVTQAAGPYFAPKAFRCLVKTIRSAGFPILPYHNQISTMREWGWVLGMKTRR 52
Cdd:PRK03612 411 LVVQSTSPYFAPKAFWSIEATLEAAGLATTPYHVNVPSFGEWGFVLAGAGAR 462
COG4262 COG4262
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction ...
 1-27 6.39e-09

Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only];


Pssm-ID: 443404 [Multi-domain]  Cd Length: 426  Bit Score: 50.25  E-value: 6.39e-09
                         10        20
                 ....*....|....*....|....*..
gi 527024088   1 MVTQAAGPYFAPKAFRCLVKTIRSAGF 27
Cdd:COG4262  400 LVVQATSPYFAPKAFWCIAKTLEAAGF 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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