|
Name |
Accession |
Description |
Interval |
E-value |
| AmtB |
COG0004 |
Ammonia channel protein AmtB [Inorganic ion transport and metabolism]; |
7-399 |
0e+00 |
|
Ammonia channel protein AmtB [Inorganic ion transport and metabolism];
Pssm-ID: 439775 Cd Length: 413 Bit Score: 547.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 7 AAKELAKNVDILWVIFASALVFFMQAGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYGTSLDGWIGKDL 86
Cdd:COG0004 2 AAAALLDSGDTAWMLVAAALVLLMTPGFALFEGGLVRSKNVLNVLMKNFADFALVSVLWVLVGYSLAFGPGAGGFIGGPL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 87 -FFLEGLNTGK------EFAFFLFQVTFMGTAATIVSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWGGGWLSKSGFH 159
Cdd:COG0004 82 gFFLSGVGPGSlagtipELVFFLFQMMFAAITAAIISGAVAERMKFSAYLIFSVLWSTLVYPPVAHWVWGGGWLAQLGFL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 160 DFAGSSVVHSVGAWVALAGVIVLGPRKDRFdsEGKPRELYGHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKIIVNT 239
Cdd:COG0004 162 DFAGGTVVHIVGGWAALAGALVLGPRIGKY--KGKPNAIPPHNLPLAALGAFLLWFGWFGFNAGSALAANGLAGLAFVNT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 240 SLAACSGCSAAILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSA 319
Cdd:COG0004 240 NLAAAAGALAWLLVEWLRKGKPDLLGAANGALAGLVAITPAAGFVSPLGALVIGLIAGVICVFAVTFLKRKLKIDDPLGA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 320 FPVHGVGGIWGTLAVSVFAQEEALRS-------WNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGLN 392
Cdd:COG0004 320 FGVHGVGGIWGTLATGLFASPALGGAglfygggAAQLGVQLIGVLVVGVWAFVVSFIILKILKKTIGLRVSEEEEREGLD 399
|
....*..
gi 523634373 393 ESEHGAK 399
Cdd:COG0004 400 LSEHGER 406
|
|
| amt |
TIGR00836 |
ammonium transporter; The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally ... |
19-400 |
9.04e-152 |
|
ammonium transporter; The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273292 Cd Length: 403 Bit Score: 447.87 E-value: 9.04e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 19 WVIFASALVFFMQAGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYG--TSLDGWIGKDLFFLEGLN--- 93
Cdd:TIGR00836 3 WLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGedNPINGFIGTGGFGLKNFLypg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 94 ------TGKEFAFFLFQVTFMGTAATIVSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWG-GGWLSKSGFHDFAGSSV 166
Cdd:TIGR00836 83 kislagTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGgGGWLYKLGVLDFAGGGV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 167 VHSVGAWVALAGVIVLGPRKDRFDsegKPRELYGHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKIIVNTSLAACSG 246
Cdd:TIGR00836 163 VHIVGGVAGLAAALVLGPRIGRFP---RPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAAG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 247 CSAAILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSAFPVHGVG 326
Cdd:TIGR00836 240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 327 GIWGTLAVSVFAQEEAL---------RSWNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGLNESEHG 397
Cdd:TIGR00836 320 GIWGLIATGLFAAPKVGgvgtggllgGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHG 399
|
...
gi 523634373 398 AKT 400
Cdd:TIGR00836 400 EFA 402
|
|
| Ammonium_transp |
pfam00909 |
Ammonium Transporter Family; |
18-397 |
1.66e-137 |
|
Ammonium Transporter Family;
Pssm-ID: 395729 Cd Length: 399 Bit Score: 411.30 E-value: 1.66e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 18 LWVIFASALVFFMQAGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYGTSLD--GWIGKDLFFLEGLNTG 95
Cdd:pfam00909 1 AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKRYGfsGFIGNLGVSAAGIQWG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 96 K--EFAFFLFQVTFMGTAATIVSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWG-GGWLSKSGF-HDFAGSSVVHSVG 171
Cdd:pfam00909 81 TlpDGLFFLFQMMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGeGGWLAKLGVlVDFAGSTVVHIFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 172 AWVALAGVIVLGPRKDRFDseGKPRELYGHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKII-VNTSLAACSGCSAA 250
Cdd:pfam00909 161 GYAGLAAALVLGPRIGRFT--GKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAaVNTNLAAAGGGLTA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 251 ILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSAFPVHGVGGIWG 330
Cdd:pfam00909 239 LLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWG 318
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 523634373 331 TLAVSVFAQEEALRS----------WNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGLNESEHG 397
Cdd:pfam00909 319 GIAVGIFAAPYVNTSgiyggllygnGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLGLRVSEEEEEVGLDVAEHG 395
|
|
| PRK10666 |
PRK10666 |
ammonium transporter AmtB; |
7-397 |
3.52e-59 |
|
ammonium transporter AmtB;
Pssm-ID: 182630 Cd Length: 428 Bit Score: 206.52 E-value: 3.52e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 7 AAKELAKNVDILWVIFASALVFFMQ-AGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYGTSLDGWIGKD 85
Cdd:PRK10666 22 AAPAVADKADNAFMMICTALVLFMTiPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNAFFGNFN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 86 LFFLEGLNTGKEFAFF--LFQVTFMGTAATI----VSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWGGGWLSKSGFH 159
Cdd:PRK10666 102 WLMLKNIELTAVMGSIyqYIHVAFQGSFACItvglIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASDGAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 160 DFAGSSVVHSVGAWVALAGVIVLGPRKDRFDSEGKPrelygHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKIIVNT 239
Cdd:PRK10666 182 DFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNT 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 240 SLAACSGCSAAILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSA 319
Cdd:PRK10666 257 VVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDV 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 320 FPVHGVGGIWGTLAVSVFAQE--------EALRSWNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGL 391
Cdd:PRK10666 337 FGVHGVCGIVGCILTGIFAASslggvgyaEGVTMGHQVLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGL 416
|
....*.
gi 523634373 392 NESEHG 397
Cdd:PRK10666 417 DVNSHG 422
|
|
| Tar |
COG0840 |
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; |
404-752 |
2.99e-36 |
|
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
Pssm-ID: 440602 [Multi-domain] Cd Length: 533 Bit Score: 144.01 E-value: 2.99e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 404 DLMNAMKYVADsKDLRKRIDVDPGVESGAVAELFNRLLLSLTQIIGVVKENSDKIENESELLENSTLMITKEIEKQKERT 483
Cdd:COG0840 212 ELLEVLERIAE-GDLTVRIDVDSKDEIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 484 ILIRETSDLLESSLKAVLDLVREERSRSSEMRRMSEEMSQGMKELQTDIltsGQISESIQSiaftgertlerTVKSMQGL 563
Cdd:COG0840 291 EETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGEVVEEAVEGI---EEIRESVEE-----------TAETIEEL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 564 NGSAKKVEELVGILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEKTASNAKQANKYLKEIWETVNGSLQS 641
Cdd:COG0840 357 GESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEagRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEA 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 642 LSETVDSFKAILIQIPKLSKTMNDALESVREYSSRSEDLETSIQGVAHMSESVAGDMEkryselnrmrdffcEIEDGAVR 721
Cdd:COG0840 437 MEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVNQAIE--------------QIAAAAQE 502
|
330 340 350
....*....|....*....|....*....|.
gi 523634373 722 IGTLLEDLQKMSLMLSGQTIRMHRVVDIFQI 752
Cdd:COG0840 503 NAASVEEVAAAAEELAELAEELQELVSRFKL 533
|
|
| MA |
smart00283 |
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ... |
486-751 |
1.21e-24 |
|
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Pssm-ID: 214599 [Multi-domain] Cd Length: 262 Bit Score: 103.90 E-value: 1.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 486 IRETSDLLESSLKAVLDLVREERSRSSEMRRMSEEMSQGMKELQTDIltsgqisESIQSIAFTGERTLERTVKSMQGLNG 565
Cdd:smart00283 16 QAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAV-------EDAITAMDQIREVVEEAVSAVEELEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 566 SAKKVEELVGILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEKTASNAKQANKYLKEIWETVNGSLQSLS 643
Cdd:smart00283 89 SSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEagRGFAVVADEVRKLAERSAESAKEIESLIKEIQEETNEAVAAME 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 644 ETVDsfkailiQIPKLSKTMNDALESVREYSSRSEDLETSIQGVAHMSESVAGDMEkrysELNRMRDffcEIEDGAVRIG 723
Cdd:smart00283 169 ESSS-------EVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSE----EVNAAID---EIAQVTQETA 234
|
250 260
....*....|....*....|....*...
gi 523634373 724 TLLEDLQKMSLMLSGQTIRMHRVVDIFQ 751
Cdd:smart00283 235 AMSEEISAAAEELSGLAEELDELVERFK 262
|
|
| MCP_signal |
cd11386 |
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ... |
515-699 |
4.26e-24 |
|
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.
Pssm-ID: 206779 [Multi-domain] Cd Length: 200 Bit Score: 100.39 E-value: 4.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 515 RRMSEEMSQGMKELQTDILTSGQISESIQSiaftgertlerTVKSMQGLNGSAKKVEELVGILQKIAEQLGMLSINAAIE 594
Cdd:cd11386 22 QQAAELAEKGREAAEDAINQMNQIDESVDE-----------AVSAVEELEESSAEIGEIVEVIDDIAEQTNLLALNAAIE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 595 SARGGD--KGFAVVAEQISVLSEKTASNAKQANKYLKEIWETVNGSLQSLSETVDSFKAILIQIPKLSKTMNDALESVRE 672
Cdd:cd11386 91 AARAGEagRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEE 170
|
170 180
....*....|....*....|....*..
gi 523634373 673 YSSRSEDLETSIQGVAHMSESVAGDME 699
Cdd:cd11386 171 VADGIQEISAATQEQSASTQEIAAAVE 197
|
|
| MCPsignal |
pfam00015 |
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ... |
539-691 |
3.00e-20 |
|
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.
Pssm-ID: 333767 [Multi-domain] Cd Length: 172 Bit Score: 88.64 E-value: 3.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 539 SESIQSIAFTGERTLERTVKSMQGLNGSAKKVEELVGILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEK 616
Cdd:pfam00015 4 AQLASEEAQDGGKEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEqgRGFAVVADEVRKLAER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 617 TASNAKQANKYLKEIWETVNGSLQSLSETV--------------DSFKAILIQIPKLSKTMNDALESVREYSSRSEDLET 682
Cdd:pfam00015 84 SAQAAKEIEALIIEIQKQTNDSTASIESTRqrvevgstivestgEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQ 163
|
....*....
gi 523634373 683 SIQGVAHMS 691
Cdd:pfam00015 164 AVARMDQVT 172
|
|
| PRK15048 |
PRK15048 |
methyl-accepting chemotaxis protein II; Provisional |
415-688 |
3.88e-14 |
|
methyl-accepting chemotaxis protein II; Provisional
Pssm-ID: 185008 [Multi-domain] Cd Length: 553 Bit Score: 75.81 E-value: 3.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 415 SKDLRKRIDVDPGVESGAVAELFNRLLLSLTQIIGVVKENSDKIENESELLENSTLMITKEIEKQKertiliretsdlle 494
Cdd:PRK15048 232 GGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQA-------------- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 495 SSLkavldlvrEERSRSSEmrrmseEMSQGMKELQTDILTSGQISESIQSIAFTGERTLERTVKSMQGLNGSAKKVEELV 574
Cdd:PRK15048 298 SAL--------EETAASME------QLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADII 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 575 GILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLsektASNAKQANKYLKEIWETVNGSLQSLSETVDSfkai 652
Cdd:PRK15048 364 SVIDGIAFQTNILALNAAVEAARAGEqgRGFAVVAGEVRNL----ASRSAQAAKEIKALIEDSVSRVDTGSVLVES---- 435
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 523634373 653 liqipkLSKTMNDALESVR-------EYSSRSEDLETSIQGVA 688
Cdd:PRK15048 436 ------AGETMNNIVNAVTrvtdimgEIASASDEQSRGIDQVA 472
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
412-630 |
1.04e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 412 VADSKDLRKRIDvDPGVESGAVAELFNRLLLSLTQIIGVVKENSDKIEN-ESELLENSTLMITK--EIEKQKERTilire 488
Cdd:TIGR02169 384 RDELKDYREKLE-KLKREINELKRELDRLQEELQRLSEELADLNAAIAGiEAKINELEEEKEDKalEIKKQEWKL----- 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 489 tsdlleSSLKAVLDLVREE-RSRSSEMRRMSEEMSQGMKELqTDILTSGQISESIQSIAFTGERTLErtvKSMQGLNGSa 567
Cdd:TIGR02169 458 ------EQLAADLSKYEQElYDLKEEYDRVEKELSKLQREL-AEAEAQARASEERVRGGRAVEEVLK---ASIQGVHGT- 526
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 523634373 568 kkVEELVGILQKIAeqlgmlsinAAIESARGGDKGFAVVaeqisvlseKTASNAKQANKYLKE 630
Cdd:TIGR02169 527 --VAQLGSVGERYA---------TAIEVAAGNRLNNVVV---------EDDAVAKEAIELLKR 569
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AmtB |
COG0004 |
Ammonia channel protein AmtB [Inorganic ion transport and metabolism]; |
7-399 |
0e+00 |
|
Ammonia channel protein AmtB [Inorganic ion transport and metabolism];
Pssm-ID: 439775 Cd Length: 413 Bit Score: 547.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 7 AAKELAKNVDILWVIFASALVFFMQAGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYGTSLDGWIGKDL 86
Cdd:COG0004 2 AAAALLDSGDTAWMLVAAALVLLMTPGFALFEGGLVRSKNVLNVLMKNFADFALVSVLWVLVGYSLAFGPGAGGFIGGPL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 87 -FFLEGLNTGK------EFAFFLFQVTFMGTAATIVSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWGGGWLSKSGFH 159
Cdd:COG0004 82 gFFLSGVGPGSlagtipELVFFLFQMMFAAITAAIISGAVAERMKFSAYLIFSVLWSTLVYPPVAHWVWGGGWLAQLGFL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 160 DFAGSSVVHSVGAWVALAGVIVLGPRKDRFdsEGKPRELYGHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKIIVNT 239
Cdd:COG0004 162 DFAGGTVVHIVGGWAALAGALVLGPRIGKY--KGKPNAIPPHNLPLAALGAFLLWFGWFGFNAGSALAANGLAGLAFVNT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 240 SLAACSGCSAAILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSA 319
Cdd:COG0004 240 NLAAAAGALAWLLVEWLRKGKPDLLGAANGALAGLVAITPAAGFVSPLGALVIGLIAGVICVFAVTFLKRKLKIDDPLGA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 320 FPVHGVGGIWGTLAVSVFAQEEALRS-------WNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGLN 392
Cdd:COG0004 320 FGVHGVGGIWGTLATGLFASPALGGAglfygggAAQLGVQLIGVLVVGVWAFVVSFIILKILKKTIGLRVSEEEEREGLD 399
|
....*..
gi 523634373 393 ESEHGAK 399
Cdd:COG0004 400 LSEHGER 406
|
|
| amt |
TIGR00836 |
ammonium transporter; The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally ... |
19-400 |
9.04e-152 |
|
ammonium transporter; The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273292 Cd Length: 403 Bit Score: 447.87 E-value: 9.04e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 19 WVIFASALVFFMQAGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYG--TSLDGWIGKDLFFLEGLN--- 93
Cdd:TIGR00836 3 WLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGedNPINGFIGTGGFGLKNFLypg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 94 ------TGKEFAFFLFQVTFMGTAATIVSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWG-GGWLSKSGFHDFAGSSV 166
Cdd:TIGR00836 83 kislagTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGgGGWLYKLGVLDFAGGGV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 167 VHSVGAWVALAGVIVLGPRKDRFDsegKPRELYGHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKIIVNTSLAACSG 246
Cdd:TIGR00836 163 VHIVGGVAGLAAALVLGPRIGRFP---RPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAAG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 247 CSAAILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSAFPVHGVG 326
Cdd:TIGR00836 240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 327 GIWGTLAVSVFAQEEAL---------RSWNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGLNESEHG 397
Cdd:TIGR00836 320 GIWGLIATGLFAAPKVGgvgtggllgGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHG 399
|
...
gi 523634373 398 AKT 400
Cdd:TIGR00836 400 EFA 402
|
|
| Ammonium_transp |
pfam00909 |
Ammonium Transporter Family; |
18-397 |
1.66e-137 |
|
Ammonium Transporter Family;
Pssm-ID: 395729 Cd Length: 399 Bit Score: 411.30 E-value: 1.66e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 18 LWVIFASALVFFMQAGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYGTSLD--GWIGKDLFFLEGLNTG 95
Cdd:pfam00909 1 AFILLSAALVIFMQPGFALLESGLVRSKNVLNILYKNFQDVAIGVLAYWLFGYSLAFGKRYGfsGFIGNLGVSAAGIQWG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 96 K--EFAFFLFQVTFMGTAATIVSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWG-GGWLSKSGF-HDFAGSSVVHSVG 171
Cdd:pfam00909 81 TlpDGLFFLFQMMFAATAITIVSGAVAERIKFSAYLLFSALLGTLVYPPVAHWVWGeGGWLAKLGVlVDFAGSTVVHIFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 172 AWVALAGVIVLGPRKDRFDseGKPRELYGHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKII-VNTSLAACSGCSAA 250
Cdd:pfam00909 161 GYAGLAAALVLGPRIGRFT--GKNEAITPHNLPFAVLGTFLLWFGWFGFNAGSALTANGRARAIAaVNTNLAAAGGGLTA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 251 ILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSAFPVHGVGGIWG 330
Cdd:pfam00909 239 LLISRLKTGKPNMLGLANGALAGLVAITPACGVVTPWGALIIGLIAGVLSVLGYKFLKEKLGIDDPLDVFPVHGVGGIWG 318
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 523634373 331 TLAVSVFAQEEALRS----------WNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGLNESEHG 397
Cdd:pfam00909 319 GIAVGIFAAPYVNTSgiyggllygnGKQLGVQLIGIAVILAYAFGVTFILGLLLGLTLGLRVSEEEEEVGLDVAEHG 395
|
|
| marine_trans_1 |
TIGR03644 |
probable ammonium transporter, marine subtype; Members of this protein family are well ... |
15-397 |
1.76e-120 |
|
probable ammonium transporter, marine subtype; Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Pssm-ID: 274697 Cd Length: 404 Bit Score: 367.45 E-value: 1.76e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 15 VDILWVIFASALVFFMQAGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMY---GTSLDGWIGKDLFFLEG 91
Cdd:TIGR03644 3 LDTFYFLISGALVMWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYpggGIFLGGILGSFLLGADN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 92 LNTGKEFAF-----------FLFQVTFMGTAATIVSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWGGGWLSKSGFHD 160
Cdd:TIGR03644 83 PVGDLIAGFegdadyssgsdFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWGGGWLDDLGFSD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 161 FAGSSVVHSVGAWVALAGVIVLGPRKDRFDSEGKPRELYGHNLPFSVLGTFILWFGWFGFNGGSTLSLTD-----EVPKI 235
Cdd:TIGR03644 163 FAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLALSDvadanAVARI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 236 IVNTSLAACSGCSAAILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVeVAAWILENILKVDD 315
Cdd:TIGR03644 243 FANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIV-VFSIVLLDKLKIDD 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 316 VVSAFPVHGVGGIWGTLAVSvFAQEEAlrswnQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGLNESE 395
Cdd:TIGR03644 322 PVGAISVHGVAGIWGTLVVP-ITNGDA-----SFGAQLIGAATIFAWVFVTSLIVWFILKATMGIRVSEEEEYEGLDIAE 395
|
..
gi 523634373 396 HG 397
Cdd:TIGR03644 396 CG 397
|
|
| PRK10666 |
PRK10666 |
ammonium transporter AmtB; |
7-397 |
3.52e-59 |
|
ammonium transporter AmtB;
Pssm-ID: 182630 Cd Length: 428 Bit Score: 206.52 E-value: 3.52e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 7 AAKELAKNVDILWVIFASALVFFMQ-AGFLLLESGLVRSKNSINVAIKNLLDYVFGTICFFLIGYGFMYGTSLDGWIGKD 85
Cdd:PRK10666 22 AAPAVADKADNAFMMICTALVLFMTiPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNAFFGNFN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 86 LFFLEGLNTGKEFAFF--LFQVTFMGTAATI----VSGAVAERIRFQAYLVCSIFVSLLIYPVFGHWAWGGGWLSKSGFH 159
Cdd:PRK10666 102 WLMLKNIELTAVMGSIyqYIHVAFQGSFACItvglIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASDGAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 160 DFAGSSVVHSVGAWVALAGVIVLGPRKDRFDSEGKPrelygHNLPFSVLGTFILWFGWFGFNGGSTLSLTDEVPKIIVNT 239
Cdd:PRK10666 182 DFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNT 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 240 SLAACSGCSAAILFDYITKGVPHVSGAINGVLGGLVAITAGCDVMSPGASLLTGLIAGVLVEVAAWILENILKVDDVVSA 319
Cdd:PRK10666 257 VVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDV 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 320 FPVHGVGGIWGTLAVSVFAQE--------EALRSWNQWQAQLTGVAVCAVWSFSMGLILFFLMKFTISIRVTSEEEERGL 391
Cdd:PRK10666 337 FGVHGVCGIVGCILTGIFAASslggvgyaEGVTMGHQVLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGL 416
|
....*.
gi 523634373 392 NESEHG 397
Cdd:PRK10666 417 DVNSHG 422
|
|
| Tar |
COG0840 |
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; |
404-752 |
2.99e-36 |
|
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
Pssm-ID: 440602 [Multi-domain] Cd Length: 533 Bit Score: 144.01 E-value: 2.99e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 404 DLMNAMKYVADsKDLRKRIDVDPGVESGAVAELFNRLLLSLTQIIGVVKENSDKIENESELLENSTLMITKEIEKQKERT 483
Cdd:COG0840 212 ELLEVLERIAE-GDLTVRIDVDSKDEIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 484 ILIRETSDLLESSLKAVLDLVREERSRSSEMRRMSEEMSQGMKELQTDIltsGQISESIQSiaftgertlerTVKSMQGL 563
Cdd:COG0840 291 EETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGEVVEEAVEGI---EEIRESVEE-----------TAETIEEL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 564 NGSAKKVEELVGILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEKTASNAKQANKYLKEIWETVNGSLQS 641
Cdd:COG0840 357 GESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEagRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEA 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 642 LSETVDSFKAILIQIPKLSKTMNDALESVREYSSRSEDLETSIQGVAHMSESVAGDMEkryselnrmrdffcEIEDGAVR 721
Cdd:COG0840 437 MEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVNQAIE--------------QIAAAAQE 502
|
330 340 350
....*....|....*....|....*....|.
gi 523634373 722 IGTLLEDLQKMSLMLSGQTIRMHRVVDIFQI 752
Cdd:COG0840 503 NAASVEEVAAAAEELAELAEELQELVSRFKL 533
|
|
| MA |
smart00283 |
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ... |
486-751 |
1.21e-24 |
|
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Pssm-ID: 214599 [Multi-domain] Cd Length: 262 Bit Score: 103.90 E-value: 1.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 486 IRETSDLLESSLKAVLDLVREERSRSSEMRRMSEEMSQGMKELQTDIltsgqisESIQSIAFTGERTLERTVKSMQGLNG 565
Cdd:smart00283 16 QAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAV-------EDAITAMDQIREVVEEAVSAVEELEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 566 SAKKVEELVGILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEKTASNAKQANKYLKEIWETVNGSLQSLS 643
Cdd:smart00283 89 SSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEagRGFAVVADEVRKLAERSAESAKEIESLIKEIQEETNEAVAAME 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 644 ETVDsfkailiQIPKLSKTMNDALESVREYSSRSEDLETSIQGVAHMSESVAGDMEkrysELNRMRDffcEIEDGAVRIG 723
Cdd:smart00283 169 ESSS-------EVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSE----EVNAAID---EIAQVTQETA 234
|
250 260
....*....|....*....|....*...
gi 523634373 724 TLLEDLQKMSLMLSGQTIRMHRVVDIFQ 751
Cdd:smart00283 235 AMSEEISAAAEELSGLAEELDELVERFK 262
|
|
| MCP_signal |
cd11386 |
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ... |
515-699 |
4.26e-24 |
|
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.
Pssm-ID: 206779 [Multi-domain] Cd Length: 200 Bit Score: 100.39 E-value: 4.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 515 RRMSEEMSQGMKELQTDILTSGQISESIQSiaftgertlerTVKSMQGLNGSAKKVEELVGILQKIAEQLGMLSINAAIE 594
Cdd:cd11386 22 QQAAELAEKGREAAEDAINQMNQIDESVDE-----------AVSAVEELEESSAEIGEIVEVIDDIAEQTNLLALNAAIE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 595 SARGGD--KGFAVVAEQISVLSEKTASNAKQANKYLKEIWETVNGSLQSLSETVDSFKAILIQIPKLSKTMNDALESVRE 672
Cdd:cd11386 91 AARAGEagRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEE 170
|
170 180
....*....|....*....|....*..
gi 523634373 673 YSSRSEDLETSIQGVAHMSESVAGDME 699
Cdd:cd11386 171 VADGIQEISAATQEQSASTQEIAAAVE 197
|
|
| MCPsignal |
pfam00015 |
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ... |
539-691 |
3.00e-20 |
|
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.
Pssm-ID: 333767 [Multi-domain] Cd Length: 172 Bit Score: 88.64 E-value: 3.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 539 SESIQSIAFTGERTLERTVKSMQGLNGSAKKVEELVGILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEK 616
Cdd:pfam00015 4 AQLASEEAQDGGKEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEqgRGFAVVADEVRKLAER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 617 TASNAKQANKYLKEIWETVNGSLQSLSETV--------------DSFKAILIQIPKLSKTMNDALESVREYSSRSEDLET 682
Cdd:pfam00015 84 SAQAAKEIEALIIEIQKQTNDSTASIESTRqrvevgstivestgEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQ 163
|
....*....
gi 523634373 683 SIQGVAHMS 691
Cdd:pfam00015 164 AVARMDQVT 172
|
|
| PRK15048 |
PRK15048 |
methyl-accepting chemotaxis protein II; Provisional |
415-688 |
3.88e-14 |
|
methyl-accepting chemotaxis protein II; Provisional
Pssm-ID: 185008 [Multi-domain] Cd Length: 553 Bit Score: 75.81 E-value: 3.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 415 SKDLRKRIDVDPGVESGAVAELFNRLLLSLTQIIGVVKENSDKIENESELLENSTLMITKEIEKQKertiliretsdlle 494
Cdd:PRK15048 232 GGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQA-------------- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 495 SSLkavldlvrEERSRSSEmrrmseEMSQGMKELQTDILTSGQISESIQSIAFTGERTLERTVKSMQGLNGSAKKVEELV 574
Cdd:PRK15048 298 SAL--------EETAASME------QLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADII 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 575 GILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLsektASNAKQANKYLKEIWETVNGSLQSLSETVDSfkai 652
Cdd:PRK15048 364 SVIDGIAFQTNILALNAAVEAARAGEqgRGFAVVAGEVRNL----ASRSAQAAKEIKALIEDSVSRVDTGSVLVES---- 435
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 523634373 653 liqipkLSKTMNDALESVR-------EYSSRSEDLETSIQGVA 688
Cdd:PRK15048 436 ------AGETMNNIVNAVTrvtdimgEIASASDEQSRGIDQVA 472
|
|
| PRK15041 |
PRK15041 |
methyl-accepting chemotaxis protein; |
405-648 |
9.05e-14 |
|
methyl-accepting chemotaxis protein;
Pssm-ID: 185001 [Multi-domain] Cd Length: 554 Bit Score: 74.61 E-value: 9.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 405 LMNAMKYVAdSKDLRKRIDVDPGVESGAVAELFNRLLLSLTQIIGVVKENSDKIENESELLENSTLMITKEIEKQKerti 484
Cdd:PRK15041 225 LIDSIRHIA-GGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQA---- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 485 liretsdlleSSLkavldlvrEERSRSsemrrmSEEMSQGMKELQTDILTSGQISESIQSIAFTGERTLERTVKSMQGLN 564
Cdd:PRK15041 300 ----------ASL--------EETAAS------MEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDIS 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 565 GSAKKVEELVGILQKIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEKTAsnakQANKYLKEIWETVNGSLQSL 642
Cdd:PRK15041 356 TSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEqgRGFAVVAGEVRNLAQRSA----QAAREIKSLIEDSVGKVDVG 431
|
....*.
gi 523634373 643 SETVDS 648
Cdd:PRK15041 432 STLVES 437
|
|
| PRK09793 |
PRK09793 |
methyl-accepting chemotaxis protein IV; |
502-688 |
3.91e-13 |
|
methyl-accepting chemotaxis protein IV;
Pssm-ID: 182079 [Multi-domain] Cd Length: 533 Bit Score: 72.80 E-value: 3.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 502 DLVREERSRSSEMRRMSEEMSQGMKELQTDILTSGQISESIQSIAFTGER---TLERTVKSMQGLNGSAKKVEELVGILQ 578
Cdd:PRK09793 286 DLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQAggvQVSTMTHTMQEIATSSQKIGDIISVID 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 579 KIAEQLGMLSINAAIESARGGD--KGFAVVAEQISVLSEKTASNAKQAnKYLKEiwETVNgSLQSLSETVDSFKAILIQI 656
Cdd:PRK09793 366 GIAFQTNILALNAAVEAARAGEqgRGFAVVAGEVRNLASRSAQAAKEI-KGLIE--ESVN-RVQQGSKLVNNAAATMTDI 441
|
170 180 190
....*....|....*....|....*....|..
gi 523634373 657 PKLSKTMNDALEsvrEYSSRSEDLETSIQGVA 688
Cdd:PRK09793 442 VSSVTRVNDIMG---EIASASEEQRRGIEQVA 470
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
452-739 |
9.20e-07 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 52.27 E-value: 9.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 452 KENSDKIENESELLENSTLMITKEIEKQKERTILIRETSDLLESSLKAVLDLVREERSRSSEM-RRMSEEMSQGMKELQT 530
Cdd:COG5185 214 NLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESsKRLNENANNLIKQFEN 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 531 dilTSGQISESIQSIAFTGE-RTLERTVKSMQGLNGSAKKVEELVGILQKIAEQL--GMLSINAAIESARGGDKGfaVVA 607
Cdd:COG5185 294 ---TKEKIAEYTKSIDIKKAtESLEEQLAAAEAEQELEESKRETETGIQNLTAEIeqGQESLTENLEAIKEEIEN--IVG 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 608 EQISVLSEKTASNAKQ----ANKYLKEIWETVNGSLQSLSETV-DSFKAILIQIPKLSKTMNDALESVREYSSRSEDLET 682
Cdd:COG5185 369 EVELSKSSEELDSFKDtiesTKESLDEIPQNQRGYAQEILATLeDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELIS 448
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 523634373 683 SIQGVAH-MSESVAGDMEKRYSELNR-----MRDFFCEIEDGAVRIGTLLEDLQKMSLMLSGQ 739
Cdd:COG5185 449 ELNKVMReADEESQSRLEEAYDEINRsvrskKEDLNEELTQIESRVSTLKATLEKLRAKLERQ 511
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
451-689 |
2.63e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 50.73 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 451 VKENSDKIENESELLENSTLMITKEIEKQKERTILIRETS--------DLLESSLKAVLDLVREERSR---SSEMRRMSE 519
Cdd:COG5185 298 IAEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETETGiqnltaeiEQGQESLTENLEAIKEEIENivgEVELSKSSE 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 520 EMSQGMKELQTDILTSGQISESIQSIAFTGERTLERTVKSmqglngSAKKVEELVGILQKIAEQLGMlSINAAIESARGG 599
Cdd:COG5185 378 ELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLKA------ADRQIEELQRQIEQATSSNEE-VSKLLNELISEL 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 600 DKgfaVVAEQISVLSEKTASNAKQANKYLKEIWETVNGSLQSLSETVDSFKAiliQIPKLSKTMNDALESVR---EYSSR 676
Cdd:COG5185 451 NK---VMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKA---TLEKLRAKLERQLEGVRsklDQVAE 524
|
250
....*....|...
gi 523634373 677 SEDLETSIQGVAH 689
Cdd:COG5185 525 SLKDFMRARGYAH 537
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
450-706 |
3.34e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 450 VVKE--NSDKIENESELLENSTLMITKEI---EKQKERTI----LIRETSDLLESSLKAV-------------LDLVREE 507
Cdd:PRK03918 150 VVRQilGLDDYENAYKNLGEVIKEIKRRIerlEKFIKRTEnieeLIKEKEKELEEVLREIneisselpelreeLEKLEKE 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 508 -------RSRSSEMRRMSEEMSQGMKELQTDIltsGQISESIQSIAfTGERTLERTVKSMQGLNGSAKKVEELVGILQKI 580
Cdd:PRK03918 230 vkeleelKEEIEELEKELESLEGSKRKLEEKI---RELEERIEELK-KEIEELEEKVKELKELKEKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 581 AEQLGMLSINAAIESARggdkgFAVVAEQISVLSEKTaSNAKQANKYLKEIWETVNgSLQSLSETVDSFKAILIQIPKLS 660
Cdd:PRK03918 306 LDELREIEKRLSRLEEE-----INGIEERIKELEEKE-ERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLK 378
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 523634373 661 K-----TMNDALESVREYSSRSEDLETSIQGVAHMsesvAGDMEKRYSELN 706
Cdd:PRK03918 379 KrltglTPEKLEKELEELEKAKEEIEEEISKITAR----IGELKKEIKELK 425
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
475-741 |
3.55e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 475 EIEKQKERTILIRETSDLLESSLKAVLDLVREERSRSSEMRRMSEEMSQGMKELqTDILTSGQISESIQSIAFTGERTLE 554
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSH-SITLKEIERLSIEYNNAMDDYNNLK 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 555 RTVKSMQGLNGSAKKVEELV----GILQKIAEQLGMLS---------INAAIESARGGDKGFAVVAEQISVLSEKTASNA 621
Cdd:PRK01156 239 SALNELSSLEDMKNRYESEIktaeSDLSMELEKNNYYKeleerhmkiINDPVYKNRNYINDYFKYKNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 622 KQANKY-------------------LKEIWETVNGSLQSLSETVDSFKAILIQIPKLSKtmndaleSVREYSSRSEDLET 682
Cdd:PRK01156 319 AEINKYhaiikklsvlqkdyndyikKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKK-------KIEEYSKNIERMSA 391
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 523634373 683 SIQGVAHMSESVAGDMEKRYSELNR-MRDFFCEIEDGAVRIGTLLEDLQKMSL---MLSGQTI 741
Cdd:PRK01156 392 FISEILKIQEIDPDAIKKELNEINVkLQDISSKVSSLNQRIRALRENLDELSRnmeMLNGQSV 454
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
412-630 |
1.04e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 412 VADSKDLRKRIDvDPGVESGAVAELFNRLLLSLTQIIGVVKENSDKIEN-ESELLENSTLMITK--EIEKQKERTilire 488
Cdd:TIGR02169 384 RDELKDYREKLE-KLKREINELKRELDRLQEELQRLSEELADLNAAIAGiEAKINELEEEKEDKalEIKKQEWKL----- 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 489 tsdlleSSLKAVLDLVREE-RSRSSEMRRMSEEMSQGMKELqTDILTSGQISESIQSIAFTGERTLErtvKSMQGLNGSa 567
Cdd:TIGR02169 458 ------EQLAADLSKYEQElYDLKEEYDRVEKELSKLQREL-AEAEAQARASEERVRGGRAVEEVLK---ASIQGVHGT- 526
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 523634373 568 kkVEELVGILQKIAeqlgmlsinAAIESARGGDKGFAVVaeqisvlseKTASNAKQANKYLKE 630
Cdd:TIGR02169 527 --VAQLGSVGERYA---------TAIEVAAGNRLNNVVV---------EDDAVAKEAIELLKR 569
|
|
| PLC-beta_C |
pfam08703 |
PLC-beta C terminal; This domain corresponds to the alpha helical C terminal domain of ... |
433-594 |
1.41e-03 |
|
PLC-beta C terminal; This domain corresponds to the alpha helical C terminal domain of phospholipase C beta.
Pssm-ID: 462571 [Multi-domain] Cd Length: 176 Bit Score: 40.43 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 433 VAELFNRLLLSLTQIiGVVKENSDKIENESELLENSTLMITKEIEKQKERTILIRETSDLLESSLKAVLDLVREER---S 509
Cdd:pfam08703 3 VRELKERLEQELLEL-REEQYEQEKKRKEQHLTEQIQKLKELAREKQAAELKALKESSESEKKEMKKKLERKRLESiqeA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523634373 510 RSSEMRRMSEEmsqgmkELQTDILTSgQISESIQSIaftgeRTLERTVKSMQglngsaKKVEEL-VGILQKIAEQLGMLS 588
Cdd:pfam08703 82 KKRTSDKAAQE------RLKKEINNS-HIQEVVQSI-----KQLEEKQKRRQ------EKLEEKqAECLQQIKEEEPQLQ 143
|
....*.
gi 523634373 589 INAAIE 594
Cdd:pfam08703 144 AELNAE 149
|
|
| |
