|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-805 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1754.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 1 MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 81 GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 161 NRVDLKLVFQEGVSAQIQQINIVGNHAFTTEQLISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 241 DSTQVSLTPDKKGIYITVNVTEGDQYKLSGVQVSGNLAGHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 321 RVQSQPEINDTDKTVKLHINVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDT 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 401 ETQRIPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 481 DGVSLGGRIFYNDFKADDADLSSYTNKSYGLDGTLGFPINEYNTLRAGLGYVHNSLSKMEPQVAMWRYLDSVGQNASTqN 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSS-D 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 561 DSNGYSADDFTFNYGWTYNNLDRGYFPTKGSRVNLNGKVTVPGSDNEFYKVTVDTASYFPIDDDHKWVVLGRTRWGYGDG 640
Cdd:PRK11067 560 SDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDG 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 641 LGGKELPFYENFYAGGSSTVRGFQSNNIGPKAVYYgGNNQSNCKNTVADSLCKSNDAVGGNAMGVVSAELITPTPFISDK 720
Cdd:PRK11067 640 LGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYY-PGQASNYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDK 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 721 YANSVRTSFFWDAGSVWDTNWQNTAQMKALGIPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 800
Cdd:PRK11067 719 YANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 798
|
....*
gi 521292342 801 IGKTW 805
Cdd:PRK11067 799 IGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-805 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 966.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 24 FVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 104 SVKDDMLKQNLeaSGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAQIQQINIV 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 184 GNHAFTTEQLISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNVTEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 264 DQYKLSGVQVSGNLAGHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDTDKTVKLHINVDA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 344 GNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTETQRIpGSPDQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 424 GSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 504 YTNKSYGLDGTLGFPINEYNTLRAGLGYVHNSLSkmepqvamwrYLDSVGQNASTQNDSNGYSADDFTFNYGWTYNNLDR 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIK----------DDSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDS 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 584 GYFPTKGSRVNLNGKVTVPGSDNEFYKVTVDTASYFPIDDDHKWVVLGRTRWGYGDGLGGKELPFYENFYAGGSSTVRGF 663
Cdd:TIGR03303 548 GYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGF 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 664 QSNNIGPKAVYYGGnnqsnckntvadslcksnDAVGGNAMGVVSAELITPTPFIsdKYANSVRTSFFWDAGSVWDTNWQN 743
Cdd:TIGR03303 628 ESNGIGPRDINDSG------------------DSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 521292342 744 TaqmkalgiPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:TIGR03303 688 E--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-805 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 744.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 26 VKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSV 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 106 KDDMLKQNLeasGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKavVTPlPRNRVDLKLVFQEGVSAQIQQINIVGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 186 HAFTTEQLISTFQLRDEVPWWnvvGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNVTEGDQ 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 266 YKLSGVQVSGNLAgHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDTDKTVKLHINVDAGN 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 346 RFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTETQRIPGSPDQVDVVYKVKERNTGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 426 FNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADdaDLSSYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDAS--DYSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 506 NKSYGLDGTLGFPINEYNTLRAGLGYVHNSLSKMEPqvamwryldsvgqNASTQNDSNGySADDFTFNYGWTYNNLDRGY 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS-------------SPDYLPDQNG-SSNTSSLGLGLTYDTRDNPL 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 586 FPTKGSRVNLNGKVTVP--GSDNEFYKVTVDTASYFPIDDdhKWVVLGRTRWGYGDGLgGKELPFYENFYAGGSSTVRGF 663
Cdd:COG4775 535 FPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGK--KLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGSLRGY 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 664 QSNNIGPKavyyggnnqsnckntvadslcksndaVGGNAMGVVSAELITPTPFISDkyaNSVRTSFFWDAGSVWDTNwqn 743
Cdd:COG4775 612 EENSLGPR--------------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSG--- 659
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 521292342 744 taqmkalgipDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:COG4775 660 ----------DDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-801 |
2.34e-113 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 347.42 E-value: 2.34e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 448 NWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGLDGTLGFPINEYNTLRA 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 528 GLGYVHNSLSKMEPQVAMWRYLDSVGQNASTqndsngysaDDFTFNYGWTYNNLDRGYFPTKGSRVNLNGKVTV--PGSD 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYPSASGTGKS---------LTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 606 NEFYKVTVDTASYFPIDDDHKWVVLGRTRWGYGDGLGGKELPFYENFYAGGSSTVRGFQSNNIGPKAVyyggnnqsnckn 685
Cdd:pfam01103 152 VSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE------------ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 686 tvadslckSNDAVGGNAMGVVSAELITPTPFISDkyaNSVRTSFFWDAGSVWDTNWQNTAQMKalgipDYSDPSNIRMSA 765
Cdd:pfam01103 220 --------DGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRASV 283
|
330 340 350
....*....|....*....|....*....|....*.
gi 521292342 766 GIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNI 801
Cdd:pfam01103 284 GVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-805 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1754.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 1 MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 81 GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 161 NRVDLKLVFQEGVSAQIQQINIVGNHAFTTEQLISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 241 DSTQVSLTPDKKGIYITVNVTEGDQYKLSGVQVSGNLAGHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 321 RVQSQPEINDTDKTVKLHINVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDT 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 401 ETQRIPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 481 DGVSLGGRIFYNDFKADDADLSSYTNKSYGLDGTLGFPINEYNTLRAGLGYVHNSLSKMEPQVAMWRYLDSVGQNASTqN 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSS-D 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 561 DSNGYSADDFTFNYGWTYNNLDRGYFPTKGSRVNLNGKVTVPGSDNEFYKVTVDTASYFPIDDDHKWVVLGRTRWGYGDG 640
Cdd:PRK11067 560 SDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDG 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 641 LGGKELPFYENFYAGGSSTVRGFQSNNIGPKAVYYgGNNQSNCKNTVADSLCKSNDAVGGNAMGVVSAELITPTPFISDK 720
Cdd:PRK11067 640 LGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYY-PGQASNYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDK 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 721 YANSVRTSFFWDAGSVWDTNWQNTAQMKALGIPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 800
Cdd:PRK11067 719 YANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 798
|
....*
gi 521292342 801 IGKTW 805
Cdd:PRK11067 799 IGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-805 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 966.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 24 FVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 104 SVKDDMLKQNLeaSGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAQIQQINIV 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 184 GNHAFTTEQLISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNVTEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 264 DQYKLSGVQVSGNLAGHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDTDKTVKLHINVDA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 344 GNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTETQRIpGSPDQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 424 GSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 504 YTNKSYGLDGTLGFPINEYNTLRAGLGYVHNSLSkmepqvamwrYLDSVGQNASTQNDSNGYSADDFTFNYGWTYNNLDR 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIK----------DDSDSDSSASYFIKEQGGKFIDSSLSYGWSYDTLDS 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 584 GYFPTKGSRVNLNGKVTVPGSDNEFYKVTVDTASYFPIDDDHKWVVLGRTRWGYGDGLGGKELPFYENFYAGGSSTVRGF 663
Cdd:TIGR03303 548 GYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGF 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 664 QSNNIGPKAVYYGGnnqsnckntvadslcksnDAVGGNAMGVVSAELITPTPFIsdKYANSVRTSFFWDAGSVWDTNWQN 743
Cdd:TIGR03303 628 ESNGIGPRDINDSG------------------DSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 521292342 744 TaqmkalgiPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:TIGR03303 688 E--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-805 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 744.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 26 VKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSV 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 106 KDDMLKQNLeasGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKavVTPlPRNRVDLKLVFQEGVSAQIQQINIVGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 186 HAFTTEQLISTFQLRDEVPWWnvvGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNVTEGDQ 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 266 YKLSGVQVSGNLAgHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDTDKTVKLHINVDAGN 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 346 RFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTETQRIPGSPDQVDVVYKVKERNTGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 426 FNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADdaDLSSYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDAS--DYSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 506 NKSYGLDGTLGFPINEYNTLRAGLGYVHNSLSKMEPqvamwryldsvgqNASTQNDSNGySADDFTFNYGWTYNNLDRGY 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS-------------SPDYLPDQNG-SSNTSSLGLGLTYDTRDNPL 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 586 FPTKGSRVNLNGKVTVP--GSDNEFYKVTVDTASYFPIDDdhKWVVLGRTRWGYGDGLgGKELPFYENFYAGGSSTVRGF 663
Cdd:COG4775 535 FPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGK--KLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGSLRGY 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 664 QSNNIGPKavyyggnnqsnckntvadslcksndaVGGNAMGVVSAELITPTPFISDkyaNSVRTSFFWDAGSVWDTNwqn 743
Cdd:COG4775 612 EENSLGPR--------------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSG--- 659
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 521292342 744 taqmkalgipDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:COG4775 660 ----------DDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-801 |
2.34e-113 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 347.42 E-value: 2.34e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 448 NWLGTGYSVGISGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGLDGTLGFPINEYNTLRA 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 528 GLGYVHNSLSKMEPQVAMWRYLDSVGQNASTqndsngysaDDFTFNYGWTYNNLDRGYFPTKGSRVNLNGKVTV--PGSD 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYPSASGTGKS---------LTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 606 NEFYKVTVDTASYFPIDDDHKWVVLGRTRWGYGDGLGGKELPFYENFYAGGSSTVRGFQSNNIGPKAVyyggnnqsnckn 685
Cdd:pfam01103 152 VSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE------------ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 686 tvadslckSNDAVGGNAMGVVSAELITPTPFISDkyaNSVRTSFFWDAGSVWDTNWQNTAQMKalgipDYSDPSNIRMSA 765
Cdd:pfam01103 220 --------DGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRASV 283
|
330 340 350
....*....|....*....|....*....|....*.
gi 521292342 766 GIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNI 801
Cdd:pfam01103 284 GVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
244-802 |
6.18e-58 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 207.83 E-value: 6.18e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 244 QVSLTPDKKGIYITVNVTEGDQYKLSGVQVSGNLAGHS----AEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAY 319
Cdd:COG0729 79 TIRLDGRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQdparRKLLAAWPLKPGDPLRHGAYEAAKSALLDALRERGYPD 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 320 PRV-QSQPEINDTDKTVKLHINVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETV 398
Cdd:COG0729 159 ARFtQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSV 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 399 DTETQRIPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGISGT--KNDYQTYSEFSVtnP 476
Cdd:COG0729 239 RVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELElsQPEQSLSADYRI--P 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 477 YFTVDgvslgGRIFYNDFKADDADLSSYTNKSYGLDGTLGFPINEYNTLRAGLGYvhnslskmepqvamwrYLDSVGQNA 556
Cdd:COG0729 317 PLFPL-----GQYLSLGAGLEREDTDDYDSRSLTLGAGRTRRLSDGWTRSLGLRL----------------LYERFTDGD 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 557 STQNdsngYSAddFTFNYGWTYNNLDRGYFPTKGSRVNLNGKVTVP--GSDNEFYKVTVDTASYFPIDDdhKWVVLGRTR 634
Cdd:COG0729 376 DDRT----YTL--LSPGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARGSWYRPLGE--RHRLAGRAE 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 635 WGYGDGLGGKELPFYENFYAGGSSTVRGFQSNNIGPKAvyyggnnqsnckntvadslcKSNDAVGGNAMGVVSAELITPt 714
Cdd:COG0729 448 LGAILGADFDDVPPSLRFFAGGDGSVRGYGYQSLGPRD--------------------GDGDVIGGRSLAVGSLEYRYR- 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 715 pfISDKYANSVrtsfFWDAGSVWDTNWQntaqmkalgipdysdpSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKA 794
Cdd:COG0729 507 --VTENWGLAV----FVDAGNAFNDFPF----------------SDLKVGAGLGLRWYSPVGPIRLDLAYPLNDRDDSSF 564
|
....*...
gi 521292342 795 eQFQFNIG 802
Cdd:COG0729 565 -RLYISLG 571
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
261-805 |
1.06e-16 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 84.23 E-value: 1.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 261 TEGDQYKLSGVQVSGNLAGHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYPRVQSqPEINDTDKTVKlhIN 340
Cdd:COG2831 59 AEGPCFTIKRIRVEGNTVLPEEELQALLAPYLGRCLTLADLNALADAITNLYRDRGYITSRAYL-PPQDLSDGVLR--IQ 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 341 VDAGnrfYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGyfeTVDTETQRIPGS-PDQVDVVYKVK 419
Cdd:COG2831 136 VVEG---RVGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLP---GVQVTAELRPGTePGTSDLVVTVE 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 420 ERNTgsFNFGVG---YGTESGVSFQ--VGVQQDNWLGTGYSVGISGT---KNDYQTYSEFSVTNPYFTvDGVSLGGRIFY 491
Cdd:COG2831 210 EAKP--FRGSLGldnSGSPSTGRYRlgASLSLDNLLGLGDQLSLSYSrslDGDGSRSYSLSYSVPLGY-WGLTLGLSYSR 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 492 NDFK-ADDADLSSYTNKSYGLDGTLGFPI----NEYNTLRAGLGYVHN-------SLSKMEPQVAMWRyldsVGQNAsTQ 559
Cdd:COG2831 287 YRSRvGGPFGTLDISGKSQTYGLRLSYPLirsrDQKLSLSLGLDYKDSrnyllgtEIEVQRRRLSVLR----LGLSY-TR 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 560 NDSNGYSADDFTFNYGwtynnldrgyFPTKGSRVNLNGKvtvPGSDNEFYKVTVDTASYFPIDDDHKWVVLGRTRWGygd 639
Cdd:COG2831 362 RLGGGVLSLSLSFSQG----------LDWLGATPAPDAS---RGPDGRFTKLRLSASRVQPLPQDFSLLLRLDGQYS--- 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 640 glgGKELPFYENFYAGGSSTVRGFQSNNIgpkavyyggnnqsnckntVADSlcksndavGgnamGVVSAELITPTPfiSD 719
Cdd:COG2831 426 ---SDPLLSSEQFSLGGRYSVRGYDEGEL------------------SGDN--------G----WYLSNELRWPLP--RL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 720 KYANSVRTSFFWDAGSVWDTNwqntaqmkalGIPDYSDPSNIrMSAGIALQWmSPLGPLV--FSYAQPFKKYDGDKAE-Q 796
Cdd:COG2831 471 SLLGGLQLYAFLDAGRVWNNS----------ALPGQLNGRTL-AGAGLGLRL-SLGKNLSldLDYARPLGDPDGDTDNrR 538
|
....*....
gi 521292342 797 FQFNIGKTW 805
Cdd:COG2831 539 LYFSLSYSF 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
267-344 |
1.22e-15 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 72.37 E-value: 1.22e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 521292342 267 KLSGVQVSGNLAGHSAEIESLTKIEPGELYNGAKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDTDKTVKLHINVDAG 344
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
177-263 |
9.10e-15 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 69.68 E-value: 9.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 177 IQQINIVGNHAFTTEQLISTFQLRdevpwwnvVGDrKYQKQKLAGDLETLRSYYLDRGYARFNIdSTQVSLTPDKKGIYI 256
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLGLK--------EGD-VYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVDL 71
|
....*..
gi 521292342 257 TVNVTEG 263
Cdd:pfam07244 72 TFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
348-421 |
5.98e-13 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 64.67 E-value: 5.98e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 521292342 348 YVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKE----RLNRLGYFETVDTETQRIPGSPDQVDVVYKVKER 421
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEalkdRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
93-172 |
2.01e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 60.43 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 93 TIASITFSGNKSVKDDMLKQNLeasGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVT-PLPRNRVDLKLVFQE 171
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77
|
.
gi 521292342 172 G 172
Cdd:pfam07244 78 G 78
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
293-669 |
6.12e-10 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 62.67 E-value: 6.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 293 GELYNGAKVT-----KMEDDIKKLLGRYGYAYPRVQSQPEINdTDKTVKLHINVDAGNrFYVRKIRFEGN---DTSKDSV 364
Cdd:TIGR00992 212 GMLYGQGIVSarllqEIRDRVQEWYHNEGYACAQVVNFGNLN-TDEVVCEVVEGDITN-LQIQFFDKLGNvveGNTRDPV 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 365 LRREMRQ--MEGAWLGSDLVDQGKERLNRLGYFEtvDTETQRIPGSPDQVDVVY--KVKERNTGSFNFGVGYGTESG--- 437
Cdd:TIGR00992 290 VTRELPKqlKPGDVFNIEAGKTALQNINSLGLFS--NIEVNPRPDEMNEGEIIVeiKLKELEQKSAEVSTEWSIVPGrgg 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 438 ----VSFQVG----VQQDNWLGTGYSVGISGTKNDYQTYS-----EFSVTNPYftVDGVSlggRIFYNDFKADDADLSSY 504
Cdd:TIGR00992 368 rptlASSQPGgtitFEHRNLQGLNRSLGGSVTTSNFLNPQddllfKVEYTHPY--LDGVD---NPRNRTYTASCFNSRKL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 505 TNKSYGLDGTLGFPinEYNTLRAGLG--YVHN--SLSKMEPQVAM----------------WRYLDSVGQNASTQNDS-N 563
Cdd:TIGR00992 443 SPVFTGGPGVNEVP--SIWVDRAGVKanITENfaRQSKFTYGLVMeeiftrdesrhinangQRSLPSGPISADGPPTTlS 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 564 GYSADD-FTFNYGWTYNNLDRGYFPTKGSRVNLNGKVTVP-GSDNEFYKVTVDTASYF-PIdddhKWVVLGRTRW----- 635
Cdd:TIGR00992 521 GTGVDRmAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGvGSGFPFFNRHQLTYTKFiQL----NWVELGAGKSpppvl 596
|
410 420 430
....*....|....*....|....*....|....*...
gi 521292342 636 ----GYGDGLGgkELPFYENFYAGGSSTVRGFQSNNIG 669
Cdd:TIGR00992 597 vlhgHYGGCVG--DLPSYDAFILGGPYSVRGYNMGELG 632
|
|
| FtsQ |
COG1589 |
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning]; ... |
6-167 |
2.89e-04 |
|
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441197 [Multi-domain] Cd Length: 241 Bit Score: 43.09 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 6 LLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRPGD---TVNDEDISNTIRALfatGNFEDVRVLRD-G 81
Cdd:COG1589 22 LLLLLLALLVWLLLFSPLFPVREVEVEGNSHVSAEEIRAALGILLGGnlfTLDLDAIRERLEAL---PWVKSASVRRRwP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 82 DTLLVQVKERPTIASITFSGNKSVkddmlkqnLEASGVRVGESLDR--------TTLSDIEKGLEDFYYSVGKYSASVKA 153
Cdd:COG1589 99 DTLVIEVTEREPVARWNTGGGYYL--------VDADGVVFEAVSAEppadlpllTGPDGSEKAVLALLELLAALPELRLQ 170
|
170
....*....|....*.
gi 521292342 154 V--VTPLPRNRVDLKL 167
Cdd:COG1589 171 IseISLSSRGRWTLTL 186
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
412-629 |
2.37e-03 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 41.38 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 412 VDVVYKvKERNTGSFNFGVGYGTESG----VSFQVGVQQDNWlgtGYSVGISGTKNDYqtysefsvtnpyftvdgvslgg 487
Cdd:COG4771 149 INIITK-KPTDELEGSVSLGYGSNGNgtysGSLSLGGPGDKL---SFLLSGSYRDRDG---------------------- 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521292342 488 riFYNDFKADDADLSSYTNKSYGldGTLGFPINEYNTLRAGLGYVHNSLSKMEPQVAMWRYLDSVGQNASTQNDSNGYSA 567
Cdd:COG4771 203 --YLDYRNGGFVGNSGYERYNLN--AKLGYRLSDNHRLSLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDTTTDRGNYSL 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 521292342 568 -------DDFTFNYGWTYNNLDRGYFPTKGSRVNlngkvtvpGSDNEFYKVTVDTASYFPIDDDHKWVV 629
Cdd:COG4771 279 ryngdlgDNLDLSLYYSRTDRDSTNGSLGGSTGS--------FSDSDDTTYGLELDLTYPLGGNHTLTL 339
|
|
| |
