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Conserved domains on  [gi|521041774|ref|WP_020373798|]
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carbohydrate ABC transporter permease [Sulfobacillus thermosulfidooxidans]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 12-280 1.67e-100

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 295.08  E-value: 1.67e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  12 WILRAFYLLLLTTGAFVMIIPFLWSVSTALKPLGESVAFPPIWWPHPIMWNNFVITWKIVPLARWFFNSLLVAFIVVLGN 91
Cdd:COG0395   11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  92 LIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSYWGMILPTII--SAMGVFLMRQAFLGI 169
Cdd:COG0395   91 LLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSI 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 170 PAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTLPLGMVMFQQQYFTNWPYLM 249
Cdd:COG0395  171 PRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLM 250

                        250       260       270
                 ....*....|....*....|....*....|.
gi 521041774 250 ASVVMATIPTAILFLVFQRWFVEGISTTGIR 280
Cdd:COG0395  251 AAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 12-280 1.67e-100

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 295.08  E-value: 1.67e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  12 WILRAFYLLLLTTGAFVMIIPFLWSVSTALKPLGESVAFPPIWWPHPIMWNNFVITWKIVPLARWFFNSLLVAFIVVLGN 91
Cdd:COG0395   11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  92 LIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSYWGMILPTII--SAMGVFLMRQAFLGI 169
Cdd:COG0395   91 LLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSI 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 170 PAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTLPLGMVMFQQQYFTNWPYLM 249
Cdd:COG0395  171 PRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLM 250

                        250       260       270
                 ....*....|....*....|....*....|.
gi 521041774 250 ASVVMATIPTAILFLVFQRWFVEGISTTGIR 280
Cdd:COG0395  251 AAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
56-274 2.61e-38

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 136.02  E-value: 2.61e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  56 PHPIMWNNFVITWK------IVPLARWFFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIM 129
Cdd:PRK10973  50 PGTHLLENIANIWVngvgnnSAPFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRI 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 130 LPTYILLRDLGLINSYWGMILPTIISAMGVFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFM 209
Cdd:PRK10973 130 FPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFI 209

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 521041774 210 GSWNNFLLPLLVANNPKLWTLPLGM--VMFQQQYFTNWPYLMASVVMATIPTAILFLVFQRWFVEGI 274
Cdd:PRK10973 210 YGWNQYLWPLLIITDVSLGTAVAGIkgMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-259 5.06e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.93  E-value: 5.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  77 FFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSYWGMILPTII-- 154
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 155 ----SAMGVFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTL 230
Cdd:cd06261   81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 521041774 231 PLGMVMFQQQYFTNWPYLMASVVMATIPT 259
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 97-271 1.56e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774   97 LAGYALARIRFKGRSLIFLSIISMLM-IPFQAIMLPTYILLRDLGLINSYWGMILPTIISAMG--VFLMRQAFLGIPAEI 173
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQaLPSFVLAILLVVIAILSILGHGILPAIILALLGWAGyaRLIRRAALRSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  174 DEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTLPLGMVMFQQqyFTNWPYLMASVV 253
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD--YPEIQGPVLAAA 160

                         170
                  ....*....|....*...
gi 521041774  254 MATIPTAILFLVFQRWFV 271
Cdd:pfam00528 161 LILLLLNLLVDILQRLLD 178
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 63-224 3.50e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 41.59  E-value: 3.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774   63 NFVITWKIVPLARWFFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIP--FQAIMLpTYI-----L 135
Cdd:TIGR03262  42 NFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPslLPAISL-IYLfgnqgL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  136 LRDLGLINSYWGMILPTIISAMGVF-----LMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMG 210
Cdd:TIGR03262 121 LKGLLGGFSIYGFWGIVIGEVFYTFphalmILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200

                         170
                  ....*....|....
gi 521041774  211 SWNNFLLPLLVANN 224
Cdd:TIGR03262 201 VITDFGVPKVIGGD 214
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 12-280 1.67e-100

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 295.08  E-value: 1.67e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  12 WILRAFYLLLLTTGAFVMIIPFLWSVSTALKPLGESVAFPPIWWPHPIMWNNFVITWKIVPLARWFFNSLLVAFIVVLGN 91
Cdd:COG0395   11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  92 LIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSYWGMILPTII--SAMGVFLMRQAFLGI 169
Cdd:COG0395   91 LLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSI 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 170 PAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTLPLGMVMFQQQYFTNWPYLM 249
Cdd:COG0395  171 PRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLM 250

                        250       260       270
                 ....*....|....*....|....*....|.
gi 521041774 250 ASVVMATIPTAILFLVFQRWFVEGISTTGIR 280
Cdd:COG0395  251 AAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-275 7.98e-64

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 201.53  E-value: 7.98e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774   1 MVGSQPRGIGGWILRAFYLLLLTTGAFVMIIPFLWSVSTALKPlGESVAFPPIWwPHPIMWNNFVITWKIVPLARWFFNS 80
Cdd:COG3833    1 MSRRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNP-GGSLYSSSLI-PENFTLENYKKLFTETPFLRWFLNS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  81 LLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSYWGMILPTIISA--MG 158
Cdd:COG3833   79 LIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAipFN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 159 VFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTLPLGM-VMF 237
Cdd:COG3833  159 TWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLySFV 238

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 521041774 238 QQQYFTNWPYLMASVVMATIPTAILFLVFQRWFVEGIS 275
Cdd:COG3833  239 SDQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLT 276
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
56-274 2.61e-38

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 136.02  E-value: 2.61e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  56 PHPIMWNNFVITWK------IVPLARWFFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIM 129
Cdd:PRK10973  50 PGTHLLENIANIWVngvgnnSAPFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRI 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 130 LPTYILLRDLGLINSYWGMILPTIISAMGVFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFM 209
Cdd:PRK10973 130 FPTVEVIANLKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFI 209

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 521041774 210 GSWNNFLLPLLVANNPKLWTLPLGM--VMFQQQYFTNWPYLMASVVMATIPTAILFLVFQRWFVEGI 274
Cdd:PRK10973 210 YGWNQYLWPLLIITDVSLGTAVAGIkgMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 77-269 8.99e-24

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 96.72  E-value: 8.99e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  77 FFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSYWGMILP--TII 154
Cdd:COG1177   63 LLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAhvVFT 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 155 SAMGVFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVAnNPKLWTLPlgM 234
Cdd:COG1177  143 LPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLA-GPGVTTLP--V 219

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 521041774 235 VMFQQQYFTNWPYLMASVVMATIPTAILFLVFQRW 269
Cdd:COG1177  220 YIYSMIRRGISPEINALSTLLILLSLLLLLLAERL 254
malG PRK10998
maltose ABC transporter permease MalG;
72-280 4.08e-23

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 95.93  E-value: 4.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  72 PLARWFFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGL------INSY 145
Cdd:PRK10998  80 PVLLWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTH 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 146 WGMILPTIIS-AMGVFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANN 224
Cdd:PRK10998 160 GGVIFAYLGGiALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 239

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 225 PKLWTLPLGMvmfqQQYFTNWPYL----MASVVMATIPTAILFLVFQRWFVEGISTTGIR 280
Cdd:PRK10998 240 VNSYTLAVGM----QQYLNPQNYLwgdfAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVK 295
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-259 5.06e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.93  E-value: 5.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  77 FFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSYWGMILPTII-- 154
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 155 ----SAMGVFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTL 230
Cdd:cd06261   81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 521041774 231 PLGMVMFQQQYFTNWPYLMASVVMATIPT 259
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
77-220 5.85e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 68.26  E-value: 5.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  77 FFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIflsiISMLMIPFqaiMLPTYI-------LLRDLGLINSYW--- 146
Cdd:COG1178   56 LGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLL----RWLLLLPL---ALPPYVvalawiaLFGPNGLLNTLLral 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 147 -GMILPTIISAMGVFLM-------------RQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSW 212
Cdd:COG1178  129 fGLEPPDIYGLGGIILVlvlfnypyvylllRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCL 208


                 ....*...
gi 521041774 213 NNFLLPLL 220
Cdd:COG1178  209 ADFGTPLV 216
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-270 8.09e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 67.88  E-value: 8.09e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774   5 QPRGIGGWILRAFYLLLLTTGAFVmIIPFLWSVSTALKPlgesvafppiWWPHPIMWNNFVITWKIVPLARWFFNSLLVA 84
Cdd:COG1178  279 RRVKLGRWRWLALALCLLLVLLGL-LLPLLALLLWSLTK----------ALDDNLTLDNYRFVLLDPSLLRALLNSLLLA 347

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  85 FIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAI---MLPTYILLRDLGLINSYWGMILPTIISAM--GV 159
Cdd:COG1178  348 LLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNRPLPLLLYGTLAILVLAYVVRFLpfAL 427

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 160 FLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVAnNPKLWTLPLGMVMFQQ 239
Cdd:COG1178  428 RSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLR-PPGFETLAVLIYQLAS 506

                        250       260       270
                 ....*....|....*....|....*....|.
gi 521041774 240 QYFTNWPYLMASVVMATipTAILFLVFQRWF 270
Cdd:COG1178  507 SGRYGEAAALALLLVLV--SLLPVLLLERLL 535
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-270 5.56e-12

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 64.40  E-value: 5.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774   1 MVGSQPRGIGGWILRAFYLLLLttgAFVMIIPFLWSVSTALKPLGESVAFPPIWWphpimWNNFV------ITWKIvpla 74
Cdd:COG1176    1 MSAALRRRLRPLLLLLPALLWL---LLFFVLPLLLLLVYSFTTRDPYGGVVPGFT-----LENYArlftdpLYLKV---- 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  75 rwFFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLIN----------- 143
Cdd:COG1176   69 --LLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNslllalglide 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 144 ------SYWGMILPTIISAM--GVFLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNF 215
Cdd:COG1176  147 plrllyTEFAVVIGLVYVYLpfMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAF 226

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 521041774 216 LLPLLVANNPKLWtlpLGMVMFQQQYFT-NWPYLMASVVMATIPTAILFLVFQRWF 270
Cdd:COG1176  227 VTPALLGGGKVLM---IGNLIYQQFLSAlNWPLAAALAVVLLLIVLLVLLLYLRLL 279
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
77-269 1.55e-11

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 63.23  E-value: 1.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  77 FFNSLLVAFIVVLGNLIFDSLAGYALAR-IRFKG--RSLIFL-SIISMLMIP--FQAIMLPTY----ILLRDLGL----- 141
Cdd:COG1175   78 LGNTLLFTVVSVPLQLVLGLLLALLLNRkLRGRGffRTLFFLpWVISPVVVAliWKWLFNPDYgllnALLGALGLepinw 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 142 ----INSYWGMILPTIISAMGVF--LMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNF 215
Cdd:COG1175  158 lgdpSLALPAVIIVTVWKGTGFNmlIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVF 237

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 521041774 216 LLPLLVAN-NPKLWTLPLGMVMFqQQYFTNWPYLMAS------VVMATIPTAILFLVFQRW 269
Cdd:COG1175  238 DLVYVLTGgGPGNSTTTLVLYIY-QTAFQQFDFGYASaiavvlFLIILVLTLLQLRLLRRR 297
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 80-208 5.51e-11

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 61.30  E-value: 5.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  80 SLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIflsiISMLMIPFqaiMLPTYI-----------------LLRDLGL- 141
Cdd:COG0555   59 SLGTALIAALINLVFGLPLAWVLVRYRFPGKRLV----DALVDLPF---ALPTAVagiallllfgpngwlgqLLAPLGIk 131

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 521041774 142 -INSYWGMILPTIISAMGvFLMRQ---AFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTF 208
Cdd:COG0555  132 vAFTPLGIVLAQTFVSLP-FVVRTvqpVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAF 201
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 97-271 1.56e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.85  E-value: 1.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774   97 LAGYALARIRFKGRSLIFLSIISMLM-IPFQAIMLPTYILLRDLGLINSYWGMILPTIISAMG--VFLMRQAFLGIPAEI 173
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQaLPSFVLAILLVVIAILSILGHGILPAIILALLGWAGyaRLIRRAALRSLPSDL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  174 DEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNPKLWTLPLGMVMFQQqyFTNWPYLMASVV 253
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD--YPEIQGPVLAAA 160

                         170
                  ....*....|....*...
gi 521041774  254 MATIPTAILFLVFQRWFV 271
Cdd:pfam00528 161 LILLLLNLLVDILQRLLD 178
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
80-243 4.40e-06

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 47.05  E-value: 4.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  80 SLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIflsiISMLMIPFQA---IMLPTYILL-------------RDLGLIN 143
Cdd:PRK11602  69 TVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLL----LTLLDIPFAVspvVAGLVYLLFygsngplggwldeHNLQLMF 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 144 SYWGMILPTIISAMGvFLMRQ---AFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLL 220
Cdd:PRK11602 145 SWPGMVLVTIFVTCP-FVVRElvpVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSV 223

                        170       180
                 ....*....|....*....|....*
gi 521041774 221 VANNPK--LWTLPLGMVMFQQQYFT 243
Cdd:PRK11602 224 VSGSIRgeTLSLPLQIELLEQDYNT 248
cysT CHL00187
sulfate transport protein; Provisional
 80-238 4.83e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 46.55  E-value: 4.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  80 SLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIPFQAIMLPTYILLRDLGLINSY-WGMILPTIISAMG 158
Cdd:CHL00187  60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLlSHLGIQIVFTKLG 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 159 VFL-------------MRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVANNP 225
Cdd:CHL00187 140 VLLamifvsfpfvvrtIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNI 219

                        170
                 ....*....|...
gi 521041774 226 KLWTLPLGMVMFQ 238
Cdd:CHL00187 220 PFKDLVASVLIFQ 232
modB PRK09421
molybdate ABC transporter permease subunit;
80-240 8.28e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 45.68  E-value: 8.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  80 SLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLiFLSIISMLMIpfqaimLPT----YILLRDL---GLINSY------- 145
Cdd:PRK09421  14 SLKVSSVAVLFSLPFGILVAWLLARCRFPGKSL-LDSLLHLPLV------LPPvvtgYLLLISMgrrGFIGQWlyewfgi 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 146 -----W-GMILPTIIsaMGVFLM----RQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNF 215
Cdd:PRK09421  87 sfafsWrGAALAAAV--MAFPLMvraiRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164

                        170       180
                 ....*....|....*....|....*..
gi 521041774 216 LLPL-LVANNP-KLWTLPLGMVMFQQQ 240
Cdd:PRK09421 165 GATItFVSNIPgETQTIPSAMYTLIQT 191
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 168-206 1.95e-04

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 42.00  E-value: 1.95e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 521041774 168 GIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALL 206
Cdd:COG4209  202 GIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLIL 240
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 148-208 2.76e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 41.61  E-value: 2.76e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 521041774 148 MILPTIISamgvfLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTF 208
Cdd:COG0573  166 MILPTITS-----LSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGL 221
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 63-224 3.50e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 41.59  E-value: 3.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774   63 NFVITWKIVPLARWFFNSLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIFLSIISMLMIP--FQAIMLpTYI-----L 135
Cdd:TIGR03262  42 NFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPslLPAISL-IYLfgnqgL 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  136 LRDLGLINSYWGMILPTIISAMGVF-----LMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMG 210
Cdd:TIGR03262 121 LKGLLGGFSIYGFWGIVIGEVFYTFphalmILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTL 200

                         170
                  ....*....|....
gi 521041774  211 SWNNFLLPLLVANN 224
Cdd:TIGR03262 201 VITDFGVPKVIGGD 214
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
80-266 7.72e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 40.12  E-value: 7.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774  80 SLLVAFIVVLGNLIFDSLAGYALARIRFKGRSLIflsiISMLMIPFQaimLPTYI---LLRDLGLINSYWGMILPTI-IS 155
Cdd:PRK10971  63 TLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLL----DALMDLPFA---LPTAVaglTLASLFSVNGWYGEWLAKFdIK 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521041774 156 AMGVFL---MRQAFLGIP--------------AEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLP 218
Cdd:PRK10971 136 VTYTWLgiaVAMAFTSIPfvvrtvqpvleelgPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAV 215

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 521041774 219 LLVANNPKLWTLPLGMVMFQQqyFTNWPYLMASVVMATIPTAILFLVF 266
Cdd:PRK10971 216 IFIAGNIAWKTEVTSLMIFVR--LQEFDYPAASAIASVILAASLLLLF 261
malF PRK10999
maltose ABC transporter permease MalF;
169-223 2.47e-03

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 39.17  E-value: 2.47e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 521041774 169 IPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFMGSWNNFLLPLLVAN 223
Cdd:PRK10999 401 IPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTN 455
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 148-209 6.45e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 37.25  E-value: 6.45e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 521041774  148 MILPTIISamgvfLMRQAFLGIPAEIDEAAIIDGASRWRMFWQIALPMVKPNLLTLALLTFM 209
Cdd:TIGR02138 161 MILPTIAS-----ISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLG 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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