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Conserved domains on  [gi|520820900|ref|WP_020301931|]
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MULTISPECIES: hypothetical protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF839 super family cl23843
Bacterial protein of unknown function (DUF839); This family consists of several bacterial ...
1-47 1.61e-03

Bacterial protein of unknown function (DUF839); This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.


The actual alignment was detected with superfamily member COG3211:

Pssm-ID: 474079  Cd Length: 568  Bit Score: 38.35  E-value: 1.61e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 520820900   1 MNPSLTD--SPALSRRGVLKIGLCASaflATAGLGASLSGCSSSTPASG 47
Cdd:COG3211    1 MSDHDDDvvEARLSRRQFLKGGLAAA---AAAALGGPLAACASAAAAGA 46
 
Name Accession Description Interval E-value
PhoX COG3211
Secreted phosphatase, PhoX family [General function prediction only];
1-47 1.61e-03

Secreted phosphatase, PhoX family [General function prediction only];


Pssm-ID: 442444  Cd Length: 568  Bit Score: 38.35  E-value: 1.61e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 520820900   1 MNPSLTD--SPALSRRGVLKIGLCASaflATAGLGASLSGCSSSTPASG 47
Cdd:COG3211    1 MSDHDDDvvEARLSRRQFLKGGLAAA---AAAALGGPLAACASAAAAGA 46
 
Name Accession Description Interval E-value
PhoX COG3211
Secreted phosphatase, PhoX family [General function prediction only];
1-47 1.61e-03

Secreted phosphatase, PhoX family [General function prediction only];


Pssm-ID: 442444  Cd Length: 568  Bit Score: 38.35  E-value: 1.61e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 520820900   1 MNPSLTD--SPALSRRGVLKIGLCASaflATAGLGASLSGCSSSTPASG 47
Cdd:COG3211    1 MSDHDDDvvEARLSRRQFLKGGLAAA---AAAALGGPLAACASAAAAGA 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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