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Conserved domains on  [gi|518666937|ref|WP_019828636|]
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D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase [Pseudomonas psychrophila]

Protein Classification

HAD family hydrolase( domain architecture ID 11483476)

The HAD (haloacid dehalogenase) family of hydrolase includes phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably diverse set of substrates

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK08942 PRK08942
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase;
1-176 1.64e-109

D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase;


:

Pssm-ID: 236354 [Multi-domain]  Cd Length: 181  Bit Score: 309.83  E-value: 1.64e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   1 MKLLILDRDGVINIDSDAYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQG 80
Cdd:PRK08942   3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  81 GEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGLLTLAKELPVN 160
Cdd:PRK08942  83 GRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPG 162
                        170
                 ....*....|....*.
gi 518666937 161 TLIFDDLAAVAAELIH 176
Cdd:PRK08942 163 TWVLDSLADLPQALKK 178
 
Name Accession Description Interval E-value
PRK08942 PRK08942
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase;
1-176 1.64e-109

D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase;


Pssm-ID: 236354 [Multi-domain]  Cd Length: 181  Bit Score: 309.83  E-value: 1.64e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   1 MKLLILDRDGVINIDSDAYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQG 80
Cdd:PRK08942   3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  81 GEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGLLTLAKELPVN 160
Cdd:PRK08942  83 GRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPG 162
                        170
                 ....*....|....*.
gi 518666937 161 TLIFDDLAAVAAELIH 176
Cdd:PRK08942 163 TWVLDSLADLPQALKK 178
HisB1/GmhB COG0241
Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily [Amino ...
1-175 2.11e-92

Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily [Amino acid transport and metabolism]; Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily is part of the Pathway/BioSystem: Histidine biosynthesis


Pssm-ID: 440011 [Multi-domain]  Cd Length: 176  Bit Score: 266.19  E-value: 2.11e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   1 MKLLILDRDGVINIDSDaYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQG 80
Cdd:COG0241    3 KKAVFLDRDGTINEDVG-YVKSPEEFEFLPGVLEALARLNEAGYRLVVVTNQSGIGRGLFTEEDLNAVHAKMLELLAAEG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  81 GEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGLLTLAKELPvn 160
Cdd:COG0241   82 GRIDAIYYCPHHPDDNCDCRKPKPGMLLQAAERLGIDLSNSYMIGDRLSDLQAAKAAGCKGILVLTGKGAEELAEALP-- 159
                        170
                 ....*....|....*
gi 518666937 161 TLIFDDLAAVAAELI 175
Cdd:COG0241  160 DTVADDLAEAVDYLL 174
HAD_HisB-N cd07503
histidinol phosphate phosphatase and related phosphatases; This family includes the N-terminal ...
2-144 2.94e-70

histidinol phosphate phosphatase and related phosphatases; This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319806 [Multi-domain]  Cd Length: 142  Bit Score: 208.93  E-value: 2.94e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   2 KLLILDRDGVINIDSDaYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQGG 81
Cdd:cd07503    1 KALFLDRDGVINVDVP-YVHKPEDLEFLPGVIEALKKLKDAGYLVVVVTNQSGIARGYFSEADFEALHDKMRELLASQGV 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518666937  82 EVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLV 144
Cdd:cd07503   80 EIDDIYYCPHHPDDGCPCRKPKPGMLLDAAKELGIDLARSFVIGDRLSDIQAARNAGCKGILV 142
Histidinol-ppas TIGR01656
histidinol-phosphate phosphatase family domain; This domain is found in authentic ...
2-147 9.48e-52

histidinol-phosphate phosphatase family domain; This domain is found in authentic histidinol-phosphate phosphatases which are sometimes found as stand-alone entities and sometimes as fusions with imidazoleglycerol-phosphate dehydratase (TIGR01261). Additionally, a family of proteins including YaeD from E. coli (TIGR00213) and various other proteins are closely related but may not have the same substrate specificity. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.


Pssm-ID: 273737  Cd Length: 147  Bit Score: 162.57  E-value: 9.48e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937    2 KLLILDRDGVINIDSDA-YIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQG 80
Cdd:TIGR01656   1 PALFLDRDGVINEDTVSdYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRLLELLRQLG 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518666937   81 GEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTG 147
Cdd:TIGR01656  81 VAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGAAAGLLVSG 147
Hydrolase_like pfam13242
HAD-hyrolase-like;
99-168 6.94e-12

HAD-hyrolase-like;


Pssm-ID: 433056 [Multi-domain]  Cd Length: 75  Bit Score: 58.01  E-value: 6.94e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518666937   99 CRKPKPGMLQTIAAHYGADLTQCWFVGDSLG-DLQAAQTVDSQPVLVKTGKGLLTLAKELPVN-TLIFDDLA 168
Cdd:pfam13242   2 CGKPNPGMLERALARLGLDPERTVMIGDRLDtDILGAREAGARTILVLTGVTRPADLEKAPIRpDYVVDDLA 73
 
Name Accession Description Interval E-value
PRK08942 PRK08942
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase;
1-176 1.64e-109

D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase;


Pssm-ID: 236354 [Multi-domain]  Cd Length: 181  Bit Score: 309.83  E-value: 1.64e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   1 MKLLILDRDGVINIDSDAYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQG 80
Cdd:PRK08942   3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  81 GEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGLLTLAKELPVN 160
Cdd:PRK08942  83 GRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPG 162
                        170
                 ....*....|....*.
gi 518666937 161 TLIFDDLAAVAAELIH 176
Cdd:PRK08942 163 TWVLDSLADLPQALKK 178
HisB1/GmhB COG0241
Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily [Amino ...
1-175 2.11e-92

Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily [Amino acid transport and metabolism]; Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily is part of the Pathway/BioSystem: Histidine biosynthesis


Pssm-ID: 440011 [Multi-domain]  Cd Length: 176  Bit Score: 266.19  E-value: 2.11e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   1 MKLLILDRDGVINIDSDaYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQG 80
Cdd:COG0241    3 KKAVFLDRDGTINEDVG-YVKSPEEFEFLPGVLEALARLNEAGYRLVVVTNQSGIGRGLFTEEDLNAVHAKMLELLAAEG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  81 GEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGLLTLAKELPvn 160
Cdd:COG0241   82 GRIDAIYYCPHHPDDNCDCRKPKPGMLLQAAERLGIDLSNSYMIGDRLSDLQAAKAAGCKGILVLTGKGAEELAEALP-- 159
                        170
                 ....*....|....*
gi 518666937 161 TLIFDDLAAVAAELI 175
Cdd:COG0241  160 DTVADDLAEAVDYLL 174
HAD_HisB-N cd07503
histidinol phosphate phosphatase and related phosphatases; This family includes the N-terminal ...
2-144 2.94e-70

histidinol phosphate phosphatase and related phosphatases; This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319806 [Multi-domain]  Cd Length: 142  Bit Score: 208.93  E-value: 2.94e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   2 KLLILDRDGVINIDSDaYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQGG 81
Cdd:cd07503    1 KALFLDRDGVINVDVP-YVHKPEDLEFLPGVIEALKKLKDAGYLVVVVTNQSGIARGYFSEADFEALHDKMRELLASQGV 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518666937  82 EVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLV 144
Cdd:cd07503   80 EIDDIYYCPHHPDDGCPCRKPKPGMLLDAAKELGIDLARSFVIGDRLSDIQAARNAGCKGILV 142
Histidinol-ppas TIGR01656
histidinol-phosphate phosphatase family domain; This domain is found in authentic ...
2-147 9.48e-52

histidinol-phosphate phosphatase family domain; This domain is found in authentic histidinol-phosphate phosphatases which are sometimes found as stand-alone entities and sometimes as fusions with imidazoleglycerol-phosphate dehydratase (TIGR01261). Additionally, a family of proteins including YaeD from E. coli (TIGR00213) and various other proteins are closely related but may not have the same substrate specificity. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.


Pssm-ID: 273737  Cd Length: 147  Bit Score: 162.57  E-value: 9.48e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937    2 KLLILDRDGVINIDSDA-YIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQG 80
Cdd:TIGR01656   1 PALFLDRDGVINEDTVSdYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRLLELLRQLG 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518666937   81 GEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTG 147
Cdd:TIGR01656  81 VAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGAAAGLLVSG 147
GmhB_yaeD TIGR00213
D,D-heptose 1,7-bisphosphate phosphatase; This family of proteins formerly designated yaeD ...
2-148 1.42e-34

D,D-heptose 1,7-bisphosphate phosphatase; This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129317 [Multi-domain]  Cd Length: 176  Bit Score: 119.64  E-value: 1.42e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937    2 KLLILDRDGVINIDSdAYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQQGG 81
Cdd:TIGR00213   2 KAIFLDRDGTINIDH-GYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDV 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518666937   82 EVGLIVYCPHGPDEG------CACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVD-SQPVLVKTGK 148
Cdd:TIGR00213  81 DLDGIYYCPHHPEGVeefrqvCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKvKTNVLVRTGK 154
HAD-SF-IIIA TIGR01662
HAD-superfamily hydrolase, subfamily IIIA; This subfamily falls within the Haloacid ...
2-144 1.57e-32

HAD-superfamily hydrolase, subfamily IIIA; This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterized by the lack of any domains located between either between the first and second conserved catalytic motifs (as in the Class I subfamilies, TIGR01493, TIGR01509, TIGR01488 and TIGR01494) or between the second and third conserved catalytic motifs (as in the Class II subfamilies, TIGR01460 and TIGR01484) of the superfamily domain. The IIIA subfamily contains five major clades: histidinol-phosphatase (TIGR01261) and histidinol-phosphatase-related protein (TIGR00213) which together form a subfamily (TIGR01656), DNA 3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668) and YrbI (TIGR01670). In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273742 [Multi-domain]  Cd Length: 135  Bit Score: 113.27  E-value: 1.57e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937    2 KLLILDRDGVINIDSDaYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDvatlDAMHARLRELVAQQGG 81
Cdd:TIGR01662   1 KAVVLDLDGTLTDDVP-YVSDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGYFS----RSFSGRVARRLEELGV 75
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 518666937   82 EVGLIVYCPHgpdegcaCRKPKPGMLQTIAAHY-GADLTQCWFVGDSLG-DLQAAQTVDSQPVLV 144
Cdd:TIGR01662  76 PIDILYACPG-------CRKPKPGMFLEALKRFnEIDPEESVYVGDQDLtDLQAAKRVGLATILV 133
PRK06769 PRK06769
HAD-IIIA family hydrolase;
6-155 2.72e-22

HAD-IIIA family hydrolase;


Pssm-ID: 180686 [Multi-domain]  Cd Length: 173  Bit Score: 87.86  E-value: 2.72e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   6 LDRDGVINIDSDayiksveewIPLPGAI-------EAIAQLSKAGWTVAIATNQSGIARGYYDVATLdamharLRELVAQ 78
Cdd:PRK06769   9 IDRDGTIGGDTT---------IHYPGSFtlfpftkASLQKLKANHIKIFSFTNQPGIADGIATIADF------VQELKGF 73
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518666937  79 QGGEVGLivyCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGLLTLAK 155
Cdd:PRK06769  74 GFDDIYL---CPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHT 147
hisB_Nterm TIGR01261
histidinol-phosphatase; This model describes histidinol phosphatase. All known examples in the ...
2-135 5.36e-21

histidinol-phosphatase; This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis. [Amino acid biosynthesis, Histidine family]


Pssm-ID: 130328 [Multi-domain]  Cd Length: 161  Bit Score: 84.38  E-value: 5.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937    2 KLLILDRDGVInID---SDAYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQ 78
Cdd:TIGR01261   2 KILFIDRDGTL-IEeppSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRS 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 518666937   79 QGGEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQ 135
Cdd:TIGR01261  81 QGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAE 137
PRK05446 PRK05446
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;
2-135 4.13e-19

bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB;


Pssm-ID: 235471 [Multi-domain]  Cd Length: 354  Bit Score: 82.53  E-value: 4.13e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   2 KLLILDRDGVInID---SDAYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDVATLDAMHARLRELVAQ 78
Cdd:PRK05446   3 KILFIDRDGTL-IEeppTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES 81
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 518666937  79 QGGEVGLIVYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQ 135
Cdd:PRK05446  82 QGIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAE 138
Gph COG0546
Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];
28-174 6.94e-18

Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];


Pssm-ID: 440312 [Multi-domain]  Cd Length: 214  Bit Score: 77.28  E-value: 6.94e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  28 PLPGAIEAIAQLSKAGWTVAIATNqsgiargyydvatldAMHARLRELVAQqggeVGLIVYCPH--GPDEGCAcRKPKPG 105
Cdd:COG0546   85 LFPGVRELLEALKARGIKLAVVTN---------------KPREFAERLLEA----LGLDDYFDAivGGDDVPP-AKPKPE 144
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937 106 MLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGLLT-LAKELPvnTLIFDDLAAVAAEL 174
Cdd:COG0546  145 PLLEALERLGLDPEEVLMVGDSPHDIEAARAAGVPFIGVTWGYGSAEeLEAAGA--DYVIDSLAELLALL 212
Hydrolase_like pfam13242
HAD-hyrolase-like;
99-168 6.94e-12

HAD-hyrolase-like;


Pssm-ID: 433056 [Multi-domain]  Cd Length: 75  Bit Score: 58.01  E-value: 6.94e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518666937   99 CRKPKPGMLQTIAAHYGADLTQCWFVGDSLG-DLQAAQTVDSQPVLVKTGKGLLTLAKELPVN-TLIFDDLA 168
Cdd:pfam13242   2 CGKPNPGMLERALARLGLDPERTVMIGDRLDtDILGAREAGARTILVLTGVTRPADLEKAPIRpDYVVDDLA 73
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
17-174 1.65e-11

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 60.43  E-value: 1.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  17 DAYIKSVEEWIPL-PGAIEAIAQLSKAGWTVAIATNqsgiarGYYDVATLDAMHARLRELVAqqggevGLIVYCPHGpde 95
Cdd:COG1011   82 EAFLAALPELVEPyPDALELLEALKARGYRLALLTN------GSAELQEAKLRRLGLDDLFD------AVVSSEEVG--- 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  96 gcaCRKPKPGMLQTIAAHYGADLTQCWFVGDSL-GDLQAAQTVDSQPVLVkTGKGLLTLAKELPvnTLIFDDLAAVAAEL 174
Cdd:COG1011  147 ---VRKPDPEIFELALERLGVPPEEALFVGDSPeTDVAGARAAGMRTVWV-NRSGEPAPAEPRP--DYVISDLAELLELL 220
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
4-138 4.31e-10

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 56.06  E-value: 4.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937    4 LILDRDGVINIDSDAYIKSVEEWIPLPGAIEAIAQLSKAGWTVAIATNQSgiargyydvatldamhARLRELVAQQGGEV 83
Cdd:pfam00702  75 LEAEGLTVVLVELLGVIALADELKLYPGAAEALKALKERGIKVAILTGDN----------------PEAAEALLRLLGLD 138
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 518666937   84 GLIVYCPHGPDEGCAcrKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVD 138
Cdd:pfam00702 139 DYFDVVISGDDVGVG--KPKPEIYLAALERLGVKPEEVLMVGDGVNDIPAAKAAG 191
HAD_like cd01427
Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily ...
32-144 6.27e-09

Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others. This superfamily includes a variety of enzymes that catalyze the cleavage of substrate C-Cl, P-C, and P-OP bonds via nucleophilic substitution pathways. All of which use a nucleophilic aspartate in their phosphoryl transfer reaction. They catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319763 [Multi-domain]  Cd Length: 106  Bit Score: 51.24  E-value: 6.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  32 AIEAIAQLSKAGWTVAIATNQSgiargyydvatLDAMHARLRELVAQQGGEVGLIVycphgpdEGCACRKPKPGMLQTIA 111
Cdd:cd01427   12 AVELLKRLRAAGIKLAIVTNRS-----------REALRALLEKLGLGDLFDGIIGS-------DGGGTPKPKPKPLLLLL 73
                         90       100       110
                 ....*....|....*....|....*....|...
gi 518666937 112 AHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLV 144
Cdd:cd01427   74 LKLGVDPEEVLFVGDSENDIEAARAAGGRTVAV 106
HAD_PGPase cd07512
haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter ...
28-175 1.47e-08

haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter sphaeroides CbbZ; Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319815 [Multi-domain]  Cd Length: 214  Bit Score: 51.93  E-value: 1.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  28 PLPGAIEAIAQLSKAGWTVAIATNQ-SGIARgyydvATLDAMHarLRELVAqqggevgLIVycphGPDEgCACRKPKPGM 106
Cdd:cd07512   87 PYPGVIEALERLRAAGWRLAICTNKpEAPAR-----ALLSALG--LADLFA-------AVV----GGDT-LPQRKPDPAP 147
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518666937 107 LQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTGKGlltlakELPVNTL----IFDDLAAVAAELI 175
Cdd:cd07512  148 LRAAIRRLGGDVSRALMVGDSETDAATARAAGVPFVLVTFGYR------HAPVAELphdaVFSDFDALPDLLA 214
PNK3P pfam08645
Polynucleotide kinase 3 phosphatase; Polynucleotide kinase 3 phosphatases play a role in the ...
30-129 5.66e-07

Polynucleotide kinase 3 phosphatase; Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.


Pssm-ID: 370030  Cd Length: 161  Bit Score: 46.87  E-value: 5.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   30 PGAIEAIAQLSKAGWTVAIATNQSGIARGyyDVATLDAMHARLRELVAQQGGEvgLIVYCPHGPDEgcaCRKPKPGMLQT 109
Cdd:pfam08645  32 PSVPEKLKKLHEDGYKIVIFTNQGGIGRK--GKKSLEKFKNKIEAILKKLGVP--LQVYAATKKDI---YRKPNTGMWDE 104
                          90       100
                  ....*....|....*....|....
gi 518666937  110 IAAHYGA----DLTQCWFVGDSLG 129
Cdd:pfam08645 105 MKKDYNDgveiDLEKSFYVGDAAG 128
PRK13222 PRK13222
N-acetylmuramic acid 6-phosphate phosphatase MupP;
28-135 1.70e-06

N-acetylmuramic acid 6-phosphate phosphatase MupP;


Pssm-ID: 237310 [Multi-domain]  Cd Length: 226  Bit Score: 46.34  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  28 PLPGAIEAIAQLSKAGWTVAIATN-----------QSGIARgYYDVATldamharlrelvaqqggevglivycphGPDEg 96
Cdd:PRK13222  94 LYPGVKETLAALKAAGYPLAVVTNkptpfvaplleALGIAD-YFSVVI---------------------------GGDS- 144
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 518666937  97 CACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAAQ 135
Cdd:PRK13222 145 LPNKKPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAAR 183
SerB COG0560
Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is ...
30-132 2.25e-06

Phosphoserine phosphatase [Amino acid transport and metabolism]; Phosphoserine phosphatase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 440326 [Multi-domain]  Cd Length: 221  Bit Score: 45.98  E-value: 2.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  30 PGAIEAIAQLSKAGWTVAIAtnqSG--------IARGY---YDVATldamharlrELVAQQG---GEV-GLIVYcphgpD 94
Cdd:COG0560   91 PGARELIAEHRAAGHKVAIV---SGgftffvepIAERLgidHVIAN---------ELEVEDGrltGEVvGPIVD-----G 153
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 518666937  95 EGcacrkpKPGMLQTIAAHYGADLTQCWFVGDSLGDLQ 132
Cdd:COG0560  154 EG------KAEALRELAAELGIDLEQSYAYGDSANDLP 185
PNK-3'Pase TIGR01663
polynucleotide 5'-kinase 3'-phosphatase; This model represents the metazoan 5 ...
4-129 8.54e-06

polynucleotide 5'-kinase 3'-phosphatase; This model represents the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3' phosphates is essential for the further processing of the break by DNA polymerases. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by TIGR01664. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. Note that the EC number for the kinase function is: 2.7.1.78


Pssm-ID: 130724 [Multi-domain]  Cd Length: 526  Bit Score: 45.02  E-value: 8.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937    4 LILDRDGVInidsdaYIKSVEEW-IPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYYDvatLDAMHARLRELVAQQGGE 82
Cdd:TIGR01663 179 IIKTKSGKV------FPKGPDDWqIIFPEIPEKLKELEADGFKICIFTNQGGIARGKIN---ADDFKAKIEAIVAKLGVP 249
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 518666937   83 VGLIVYCPHGpdegcACRKPKPGMLQTIA--AHYGADLT--QCWFVGDSLG 129
Cdd:TIGR01663 250 FQVFIAIGAG-----FYRKPLTGMWDHLKeeANDGTEIQedDCFFVGDAAG 295
PGP_bact TIGR01449
2-phosphoglycolate phosphatase, prokaryotic; PGP is an essential enzyme in the glycolate ...
28-147 4.11e-05

2-phosphoglycolate phosphatase, prokaryotic; PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In Ralstonia (Alcaligenes) eutropha and Rhodobacter sphaeroides, the PGP gene (CbbZ) is located on an operon along with other Calvin cycle enzymes including RubisCO. The only other pertinent experimental evidence concerns the gene from E. coli. The in vitro activity of the Ralstonia and Escherichia enzymes was determined with crude cell extracts of strains containing PGP on expression plasmids and compared to controls. In E. coli, however, there does not appear to be a functional Calvin cycle (RubisCO is absent), although the E. coli PGP gene (gph) is on the same operon (dam) with ribulose-5-phosphate-3-epimerase (rpe), a gene in the pentose-phosphate pathway (along with other, unrelated genes). The E. coli enzyme is not expressed under normal laboratory conditions; the pathway to which it belongs has not been determined. In fact, the possibility exists, although unlikely, that the E. coli enzyme and others within this equivalog have as their physiological substrate another, closely related molecule. The other seed chosen for this model, from Xylella fastidiosa has no experimental evidence, but is a plant pathogen and thus may obtain phosphoglycolate from its host. This model has been restricted to encompass only proteobacteria as no related PGP has been verified outside of this clade. Sequences from Aquifex aeolicus and Treponema pallidum fall between the trusted and noise cutoffs. Just below the noise cutoff is a gene which is part of the operon for the biosynthesis of the blue pigment, indigoidine, from Erwinia (Pectobacterium) chrysanthemi, a plant pathogen. It does not seem likely, considering the proposed biosynthetic mechanism, that the dephosphorylation of phosphoglycolate or a closely related compound is required. Possibly, this gene is fortuitously located in this operon, or has an indirect relationship to the necessity for the biosynthesis of this compound. Sequences from 11 species have been annotated as PGP or putative PGP but fall below the noise cutoff. None of these have experimental validation. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702). [Energy metabolism, Sugars]


Pssm-ID: 130516 [Multi-domain]  Cd Length: 213  Bit Score: 42.50  E-value: 4.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   28 PLPGAIEAIAQLSKAGWTVAIATNQSgiargyydvatldamharlRELVAQQGGEVGLIVYCPH--GPDEgCACRKPKPG 105
Cdd:TIGR01449  86 VFPGVEATLGALRAKGLRLGLVTNKP-------------------TPLARPLLELLGLAKYFSVliGGDS-LAQRKPHPD 145
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 518666937  106 MLQTIAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTG 147
Cdd:TIGR01449 146 PLLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYG 187
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
28-134 4.29e-05

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 42.12  E-value: 4.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  28 PLPGAIEAIAQLSKAGWTVAIATNqsgiargyydvATLDAMHARLRELvaqqggevGLIVYCPH--GPDEgCACRKPKPG 105
Cdd:COG0637   87 LIPGVVELLEALKEAGIKIAVATS-----------SPRENAEAVLEAA--------GLLDYFDVivTGDD-VARGKPDPD 146
                         90       100
                 ....*....|....*....|....*....
gi 518666937 106 MLQTIAAHYGADLTQCWFVGDSLGDLQAA 134
Cdd:COG0637  147 IYLLAAERLGVDPEECVVFEDSPAGIRAA 175
HAD_PNP cd01625
polynucleotide 3'-phosphatase domain similar to the phosphatase domain of the bifunctional ...
21-129 4.44e-05

polynucleotide 3'-phosphatase domain similar to the phosphatase domain of the bifunctional enzyme polynucleotide 5'-kinase/3'-phosphatase; Polynucleotide 3'-phosphatase (PNP) domain. This domain dephosphorylates single-stranded as well as double-stranded 3'-phospho termini. It is found in bifunctional enzyme polynucleotide kinase/phosphatase (PNKP) which contain both kinase and phosphatase domains. PNKP plays a key role in both base excision repair and non-homologous end-joining DNA repair pathway. DNA strand breaks can result from DNA damage by ionizing radiation and chemical agents, such as alkylating agents or anticancer agents. Such DNA damage often results in DNA strands with 5'-hydroxyl and 3'-phosphate termini. However, the repair of DNA damage by DNA polymerases and ligases requires 5'-phosphate and 3'-hydroxyl termini. PNKP acts as a 5'-kinase/3'-phosphatase to create 5'-phosphate/3'-hydroxyl termini, which are a necessary prerequisite for ligation during repair. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319766  Cd Length: 154  Bit Score: 41.57  E-value: 4.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  21 KSVEEW-IPLPGAIEAIAQLSKAGWTVAIATNQSGIARGYydvATLDAMHARLRELVAQQGgeVGLIVYCPHGPDegcAC 99
Cdd:cd01625   22 TNASDWqILYPSVPEKLKALHKDGYKIVIFTNQGGIVRGK---LTPEVFKGKIEAILEKLG--VPIQVYAATKKG---KY 93
                         90       100       110
                 ....*....|....*....|....*....|....
gi 518666937 100 RKPKPGMLQTIAAH----YGADLTQCWFVGDSLG 129
Cdd:cd01625   94 RKPVTGMWDHLKEDlnsgIPINLKDSFYVGDAAG 127
Hydrolase_6 pfam13344
Haloacid dehalogenase-like hydrolase; This family is part of the HAD superfamily.
4-75 4.70e-05

Haloacid dehalogenase-like hydrolase; This family is part of the HAD superfamily.


Pssm-ID: 433132  Cd Length: 101  Bit Score: 40.53  E-value: 4.70e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518666937    4 LILDRDGVINIDSDayiksveewiPLPGAIEAIAQLSKAGWTVAIATNQSGIARgyydvatlDAMHARLREL 75
Cdd:pfam13344   1 FLFDIDGVLWRGGE----------PIPGAAEALRALRAAGKPVVFVTNNSSRSR--------EEYAEKLRKL 54
HAD-SF-IA-v1 TIGR01549
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or ...
29-135 5.91e-05

haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273686 [Multi-domain]  Cd Length: 164  Bit Score: 41.23  E-value: 5.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   29 LPGAIEAIAQLSKAGWTVAIATNqsgiargyydvATLDAMharlrELVAQQGGEVGLIVYcPHGPDEGCacRKPKPGMLQ 108
Cdd:TIGR01549  75 IRGAADLLARLKSAGIKLGIISN-----------GSLRAQ-----KLLLRLFGLGDYFEL-ILVSDEPG--SKPEPEIFL 135
                          90       100
                  ....*....|....*....|....*..
gi 518666937  109 TIAAHYGADlTQCWFVGDSLGDLQAAQ 135
Cdd:TIGR01549 136 AALESLGVP-PEVLHVGDNLNDIEGAR 161
HAD_like cd07533
uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar ...
30-147 9.20e-05

uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans HAD-superfamily hydrolase, subfamily IA, variant 1; This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319835 [Multi-domain]  Cd Length: 207  Bit Score: 41.23  E-value: 9.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  30 PGAIEAIAQLSKAGWTVAIATNQSgiARGyydvatLDAMharlreLVAQQGGEVGLIVYCphgPDEGCAcrKPKPGMLQT 109
Cdd:cd07533   87 PGVREALDALAAQGVLLAVATGKS--RRG------LDRV------LEQHGLGGYFDATRT---ADDTPS--KPHPEMLRE 147
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 518666937 110 IAAHYGADLTQCWFVGDSLGDLQAAQTVDSQPVLVKTG 147
Cdd:cd07533  148 ILAELGVDPSRAVMVGDTAYDMQMAANAGAHAVGVAWG 185
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
28-135 1.30e-04

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 40.65  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   28 PLPGAIEAIAQLSKAGWTVAIATNqsgiarGYYDVATLDAMHARLREL--VAQQGGEVGLivycphgpdegcacRKPKPG 105
Cdd:pfam13419  80 PYPGIKELLEELKEQGYKLGIVTS------KSRENVEEFLKQLGLEDYfdVIVGGDDVEG--------------KKPDPD 139
                          90       100       110
                  ....*....|....*....|....*....|
gi 518666937  106 MLQTIAAHYGADLTQCWFVGDSLGDLQAAQ 135
Cdd:pfam13419 140 PILKALEQLGLKPEEVIYVGDSPRDIEAAK 169
HAD_sEH-N_like cd02603
N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX ...
28-135 2.17e-04

N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive; This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319790 [Multi-domain]  Cd Length: 195  Bit Score: 40.02  E-value: 2.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937  28 PLPGAIEAIAQLSKAGWTVAIATNQsgiargYYDVATLDAMHARLRELVAQqggevGLIVYCphgpDEGCacRKPKPGML 107
Cdd:cd02603   85 PNPEMLDLLEALRAKGYKVYLLSNT------WPDHFKFQLELLPRRGDLFD-----GVVESC----RLGV--RKPDPEIY 147
                         90       100
                 ....*....|....*....|....*...
gi 518666937 108 QTIAAHYGADLTQCWFVGDSLGDLQAAQ 135
Cdd:cd02603  148 QLALERLGVKPEEVLFIDDREENVEAAR 175
HAD pfam12710
haloacid dehalogenase-like hydrolase;
30-135 1.50e-03

haloacid dehalogenase-like hydrolase;


Pssm-ID: 432733 [Multi-domain]  Cd Length: 188  Bit Score: 37.51  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   30 PGAIEAIAQLSKAGWTVAIATnqsgiargyydvATLDAMharLRELVAQQGG--------EVGLIVYCPHGPDEGCACRK 101
Cdd:pfam12710  87 PGALELLAAHRAAGDRVVVVT------------GGLRPL---VEPVLAELGFdevlatelEVDDGRFTGELRLIGPPCAG 151
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 518666937  102 P-KPGMLQ--TIAAHYGADLTQCWFVGDSLGDLQAAQ 135
Cdd:pfam12710 152 EgKVRRLRawLAARGLGLDLADSVAYGDSPSDLPMLR 188
HAD_BPGM-like cd07505
beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase ...
4-134 1.56e-03

beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319808 [Multi-domain]  Cd Length: 143  Bit Score: 37.21  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518666937   4 LILDRDGVInIDSDAYIKSVEEWI-----------------PLPGAIEAIAQLSKAGWTVAIATNqsgiargyydvatld 66
Cdd:cd07505    2 VIFDMDGVL-IDTEPLHRQAWQLLerknallleliaseglkLKPGVVELLDALKAAGIPVAVATS--------------- 65
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 518666937  67 AMHARLRELVAQQGGEVGLivYCPHGPDEGCACRKPKPGMLQTIAAHYGADLTQCWFVGDSLGDLQAA 134
Cdd:cd07505   66 SSRRNVELLLLELGLLRGY--FDVIVSGDDVERGKPAPDIYLLAAERLGVDPERCLVFEDSLAGIEAA 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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