|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-807 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1517.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 1 MLKKTHIISGLLIAPLTLYAATSYQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 81 GKTLVVQVKERPTIASVSFSGNKAVKDDALKENLTASGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 161 NRVDLTFVFQEGISAKIAQINIIGNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 241 ESTQVSMTPDKKSLYITIALNEGERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 321 QVTSTPEIDDAHHRVVLHIQVNAGRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQ 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 401 QIVPVNGTADQVDVVYKVKERNTGSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 481 DGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPELTTWRYLSSRGIEPsvvt 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENP---- 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 561 kDGDSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAG 640
Cdd:PRK11067 557 -SSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLG 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 641 YAGGLDGKSVPFYDNFYAGGSLSVRGFSSNTIGPKAAYYRCNGSE-SSYSACPLDASSDAVGGNAMAVLNSEFIIPTPFV 719
Cdd:PRK11067 636 YGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 720 NDKYADSLRTSLFVDAGTVWSTSWHNTAQTLAAGIPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQF 799
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQF 795
|
....*...
gi 518555202 800 QFNIGKTW 807
Cdd:PRK11067 796 QFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-807 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 909.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 24 YQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 104 AVKDDALKENLtaSGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPRNRVDLTFVFQEGISAKIAQINII 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 184 GNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 264 ERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 344 GRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNgTADQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVG-SPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 424 GSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 504 YNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNmdpelttwrylsSRGIEPSVVTKDGDSGAKYsaNDYFVSLGWGYN 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD------------DSDSDSSASYFIKEQGGKF--IDSSLSYGWSYD 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 584 DLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSLS 663
Cdd:TIGR03303 544 TLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGS 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 664 VRGFSSNTIGPKAAYYrcngsessysacpldaSSDAVGGNAMAVLNSEFIIPTPFVndKYADSLRTSLFVDAGTVWSTSW 743
Cdd:TIGR03303 624 VRGFESNGIGPRDIND----------------SGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQ 685
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518555202 744 HNTaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:TIGR03303 686 KKE--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-807 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 722.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 26 VDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNKAV 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 106 KDDALKENLtasGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHavVTPlPRNRVDLTFVFQEGISAKIAQINIIGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 186 QAFREETLLDQLQLRDNVPWWNvvaDKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEGER 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 266 YRVDRTQVTGDLAqHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNAGR 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 346 RYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKERNTGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 426 FNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADagSYN 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS--SYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 506 QQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPelTTWRYLSSRGiepsvvtkdgdsgakySANDYFVSLGWGYNDL 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS--SPDYLPDQNG----------------SSNTSSLGLGLTYDTR 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 586 DRGFFPRAGNKSSLSGKVTLP--GSDNSYYKLSFDTAQYLPLSenKRWVWMERLRAGYAGGLdGKSVPFYDNFYAGGSLS 663
Cdd:COG4775 531 DNPLFPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLG--KKLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGS 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 664 VRGFSSNTIGPKaayyrcngsessysacpldassdaVGGNAMAVLNSEFIIPTPFVNDKyadSLRTSLFVDAGTVWSTsw 743
Cdd:COG4775 608 LRGYEENSLGPR------------------------LGGNAYLLGSAELRFPLPLPPSA---GLRGALFVDAGNVWDS-- 658
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518555202 744 hntaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:COG4775 659 -----------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-803 |
1.75e-98 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 308.52 E-value: 1.75e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 448 NWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNL 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 528 GLDYVHNRLTNMDPELTTWRYLSSrgiepsvvtkdgdSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTL-- 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYPS-------------ASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpf 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 606 PGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSLSVRGFSSNTIGPKaayyrcngse 685
Cdd:pfam01103 148 LGGDVSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPR---------- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 686 ssysacplDASSDAVGGNAMAVLNSEFIIPTPFVNDkyaDSLRTSLFVDAGTVWSTSWHNTAQTLaagipDYGDPSHIRL 765
Cdd:pfam01103 218 --------DEDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRA 281
|
330 340 350
....*....|....*....|....*....|....*...
gi 518555202 766 SAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNI 803
Cdd:pfam01103 282 SVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-807 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1517.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 1 MLKKTHIISGLLIAPLTLYAATSYQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 81 GKTLVVQVKERPTIASVSFSGNKAVKDDALKENLTASGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 161 NRVDLTFVFQEGISAKIAQINIIGNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 241 ESTQVSMTPDKKSLYITIALNEGERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 321 QVTSTPEIDDAHHRVVLHIQVNAGRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQ 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 401 QIVPVNGTADQVDVVYKVKERNTGSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 481 DGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPELTTWRYLSSRGIEPsvvt 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENP---- 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 561 kDGDSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAG 640
Cdd:PRK11067 557 -SSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLG 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 641 YAGGLDGKSVPFYDNFYAGGSLSVRGFSSNTIGPKAAYYRCNGSE-SSYSACPLDASSDAVGGNAMAVLNSEFIIPTPFV 719
Cdd:PRK11067 636 YGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 720 NDKYADSLRTSLFVDAGTVWSTSWHNTAQTLAAGIPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQF 799
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQF 795
|
....*...
gi 518555202 800 QFNIGKTW 807
Cdd:PRK11067 796 QFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-807 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 909.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 24 YQVDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 104 AVKDDALKENLtaSGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVTPLPRNRVDLTFVFQEGISAKIAQINII 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 184 GNQAFREETLLDQLQLRDNVPWWNVVADKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 264 ERYRVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 344 GRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNgTADQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVG-SPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 424 GSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 504 YNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNmdpelttwrylsSRGIEPSVVTKDGDSGAKYsaNDYFVSLGWGYN 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD------------DSDSDSSASYFIKEQGGKF--IDSSLSYGWSYD 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 584 DLDRGFFPRAGNKSSLSGKVTLPGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSLS 663
Cdd:TIGR03303 544 TLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGS 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 664 VRGFSSNTIGPKAAYYrcngsessysacpldaSSDAVGGNAMAVLNSEFIIPTPFVndKYADSLRTSLFVDAGTVWSTSW 743
Cdd:TIGR03303 624 VRGFESNGIGPRDIND----------------SGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQ 685
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518555202 744 HNTaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:TIGR03303 686 KKE--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-807 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 722.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 26 VDDIRFEGLQRVTVGAALLSMPLHAGDAVTPEDVSEAVRALYASGNFENVQILRDGKTLVVQVKERPTIASVSFSGNKAV 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 106 KDDALKENLtasGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHavVTPlPRNRVDLTFVFQEGISAKIAQINIIGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 186 QAFREETLLDQLQLRDNVPWWNvvaDKKYQKQKLEADLETLRSFYLDRGYARFAIESTQVSMTPDKKSLYITIALNEGER 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLTK---SDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 266 YRVDRTQVTGDLAqHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNAGR 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 346 RYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKERNTGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 426 FNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADagSYN 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS--SYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 506 QQSYGLGSTLGFPISENNSLNLGLDYVHNRLTNMDPelTTWRYLSSRGiepsvvtkdgdsgakySANDYFVSLGWGYNDL 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS--SPDYLPDQNG----------------SSNTSSLGLGLTYDTR 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 586 DRGFFPRAGNKSSLSGKVTLP--GSDNSYYKLSFDTAQYLPLSenKRWVWMERLRAGYAGGLdGKSVPFYDNFYAGGSLS 663
Cdd:COG4775 531 DNPLFPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLG--KKLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGS 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 664 VRGFSSNTIGPKaayyrcngsessysacpldassdaVGGNAMAVLNSEFIIPTPFVNDKyadSLRTSLFVDAGTVWSTsw 743
Cdd:COG4775 608 LRGYEENSLGPR------------------------LGGNAYLLGSAELRFPLPLPPSA---GLRGALFVDAGNVWDS-- 658
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518555202 744 hntaqtlaagiPDYGDPSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNIGKTW 807
Cdd:COG4775 659 -----------GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-803 |
1.75e-98 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 308.52 E-value: 1.75e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 448 NWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLGGKIFYNSYDASDADAGSYNQQSYGLGSTLGFPISENNSLNL 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 528 GLDYVHNRLTNMDPELTTWRYLSSrgiepsvvtkdgdSGAKYSANDYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTL-- 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYPS-------------ASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpf 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 606 PGSDNSYYKLSFDTAQYLPLSENKRWVWMERLRAGYAGGLDGKSVPFYDNFYAGGSLSVRGFSSNTIGPKaayyrcngse 685
Cdd:pfam01103 148 LGGDVSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPR---------- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 686 ssysacplDASSDAVGGNAMAVLNSEFIIPTPFVNDkyaDSLRTSLFVDAGTVWSTSWHNTAQTLaagipDYGDPSHIRL 765
Cdd:pfam01103 218 --------DEDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRA 281
|
330 340 350
....*....|....*....|....*....|....*...
gi 518555202 766 SAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAEQFQFNI 803
Cdd:pfam01103 282 SVGVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
256-804 |
2.58e-50 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 186.26 E-value: 2.58e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 256 ITIALNEGERYRVDRTQV--TGDLAQHgPEIEALAQPLA---GAWYSGAQVTTVENEIKKHFGKYGYAWPQVTST-PEID 329
Cdd:COG0729 91 VTITVDPGPPVRIGKVDIelLGEAAQD-PARRKLLAAWPlkpGDPLRHGAYEAAKSALLDALRERGYPDARFTQSrAEVD 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 330 DAHHRVVLHIQVNAGRRYSVRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTA 409
Cdd:COG0729 170 PATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVTPDEDPAPD 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 410 DQVDVVYKVKERNTGSFNVGLGFGTDSGVSYQLGVTQDNWLGTGNSVSFNGTRNSYQSYLELGATNPWFTVDGISLggkI 489
Cdd:COG0729 250 GTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELELSQPEQSLSADYRIPPLFPLGQYL---S 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 490 FYNSYDASDADAgsYNQQSYGLGSTLGFPISENNSLNLGLDYVHNRLTnmdpelttwrylssrgiepsvvtkDGDSGAKY 569
Cdd:COG0729 327 LGAGLEREDTDD--YDSRSLTLGAGRTRRLSDGWTRSLGLRLLYERFT------------------------DGDDDRTY 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 570 SAndYFVSLGWGYNDLDRGFFPRAGNKSSLSGKVTLP--GSDNSYYKLSFDTAQYLPLSENKRWVWmeRLRAGYAGGLDG 647
Cdd:COG0729 381 TL--LSPGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARGSWYRPLGERHRLAG--RAELGAILGADF 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 648 KSVPFYDNFYAGGSLSVRGFSSNTIGPKaayyrcngsessysacplDASSDAVGGNAMAVLNSEFIIPTpfvndkyADSL 727
Cdd:COG0729 457 DDVPPSLRFFAGGDGSVRGYGYQSLGPR------------------DGDGDVIGGRSLAVGSLEYRYRV-------TENW 511
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518555202 728 RTSLFVDAGTVWSTswhntaqtlaagIPDygdpSHIRLSAGIAVQWMSPLGPLVFSWAEPFKKYDGDKAeQFQFNIG 804
Cdd:COG0729 512 GLAVFVDAGNAFND------------FPF----SDLKVGAGLGLRWYSPVGPIRLDLAYPLNDRDDSSF-RLYISLG 571
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
176-263 |
1.94e-15 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 71.60 E-value: 1.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 176 KIAQINIIGNQAFREETLLDQLQLRDNvpwwnvvadKKYQKQKLEADLETLRSFYLDRGYARFAIeSTQVSMTPDKKSLY 255
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEG---------DVYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVD 70
|
....*...
gi 518555202 256 ITIALNEG 263
Cdd:pfam07244 71 LTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
93-172 |
2.47e-13 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 65.83 E-value: 2.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 93 TIASVSFSGNKAVKDDALKENLtasGISAGSALDRNSLSEIEKGLQDFYYSAGKYSAQVHAVVT-PLPRNRVDLTFVFQE 171
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77
|
.
gi 518555202 172 G 172
Cdd:pfam07244 78 G 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
349-421 |
2.11e-12 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 63.13 E-value: 2.11e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518555202 349 VRQIRFSGNDTSRDAVLRREMRQMEGAWLNNEKVDQG----KVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKER 421
Cdd:pfam07244 2 IGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDkealKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
267-344 |
1.30e-06 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 46.57 E-value: 1.30e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 518555202 267 RVDRTQVTGDLAQHGPEIEALAQPLAGAWYSGAQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDAHHRVVLHIQVNAG 344
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
232-673 |
7.29e-06 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 49.57 E-value: 7.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 232 DRGY---ARFAIESTQVSMTPD---KKSLYITIALNEGERYRVDR-------TQVTGDLAQHGPEIEALaqplagawySG 298
Cdd:TIGR00992 152 DRFRcinVGLMPQSKPLEMDVDmevKEKPEFTRRLEIRYKRRIAEarpcllpQEVVDETFGMLYGQGIV---------SA 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 299 AQVTTVENEIKKHFGKYGYAWPQVTSTPEIDDahHRVVLHIQVNAGRRYSVRQIRFSGN---DTSRDAVLRREMRQ--ME 373
Cdd:TIGR00992 223 RLLQEIRDRVQEWYHNEGYACAQVVNFGNLNT--DEVVCEVVEGDITNLQIQFFDKLGNvveGNTRDPVVTRELPKqlKP 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 374 GAWLNNEKVDQGKVRLDRTGFFENVEQQIVPVNGTADQVDVVYKVKERNTGSFNVGL-------GFGTDSGVSYQLGVT- 445
Cdd:TIGR00992 301 GDVFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEIIVEIKLKELEQKSAEVSTewsivpgRGGRPTLASSQPGGTi 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 446 ---QDNWLGTGNSVSFNGTRNSYQSY-----LELGATNPWftVDGISlggKIFYNSYDASDADAGSYNQQSYGLGSTLGF 517
Cdd:TIGR00992 381 tfeHRNLQGLNRSLGGSVTTSNFLNPqddllFKVEYTHPY--LDGVD---NPRNRTYTASCFNSRKLSPVFTGGPGVNEV 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 518 PISENNSLNLGLDYVHNRltnMDPELTTWRYLSSRGIEPSVVTKDGDSGAK------YSANDYFVSL-GWGyndLDRGFF 590
Cdd:TIGR00992 456 PSIWVDRAGVKANITENF---ARQSKFTYGLVMEEIFTRDESRHINANGQRslpsgpISADGPPTTLsGTG---VDRMAF 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518555202 591 PRAG----NKSSLSGKV-----------TLP-GSDNSYY-KLSFDTAQYLPLsenkRWVWMERLRA--------GYAGGL 645
Cdd:TIGR00992 530 LQANitrdNTNFVNGPTvgsrvrfqvdqGLGvGSGFPFFnRHQLTYTKFIQL----NWVELGAGKSpppvlvlhGHYGGC 605
|
490 500
....*....|....*....|....*...
gi 518555202 646 DGkSVPFYDNFYAGGSLSVRGFSSNTIG 673
Cdd:TIGR00992 606 VG-DLPSYDAFILGGPYSVRGYNMGELG 632
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
24-92 |
1.10e-03 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 42.58 E-value: 1.10e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 518555202 24 YQVDDIRFEGLQRVtvGAALLS--MPLHAGDAVTPEDVSEAVRALYASGNFENVQI-----LRDGKTL--VVQVKERP 92
Cdd:COG0729 187 YRFGEITVEGLSRV--PEDFLRrlAPFKPGEPYSPDKLLELQQRLQSTGYFSSVRVtpdedPAPDGTVpvTVTLTERK 262
|
|
| |
