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Conserved domains on  [gi|518284927|ref|WP_019455135|]
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MULTISPECIES: ribosome maturation factor RimM [Serratia]

Protein Classification

ribosome maturation factor RimM( domain architecture ID 11478117)

ribosome maturation factor RimM is an accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region

Gene Ontology:  GO:0043022|GO:0042274
PubMed:  23293003

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 10-182 2.41e-83

16S rRNA-processing protein RimM; Provisional


:

Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 243.51  E-value: 2.41e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  10 PKQPIVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQAGQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNR 89
Cdd:PRK00122   4 PEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKGC 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  90 EIMVDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKANLKdafgmKERLIPFLHgQVIKKVDL 169
Cdd:PRK00122  84 ELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLKDKK-----EERLIPFVE-EVVKEVDL 157

                        170
                 ....*....|...
gi 518284927 170 TARVIEADWDPGF 182
Cdd:PRK00122 158 EAKRITVDWPEGL 170
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 10-182 2.41e-83

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 243.51  E-value: 2.41e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  10 PKQPIVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQAGQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNR 89
Cdd:PRK00122   4 PEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKGC 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  90 EIMVDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKANLKdafgmKERLIPFLHgQVIKKVDL 169
Cdd:PRK00122  84 ELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLKDKK-----EERLIPFVE-EVVKEVDL 157

                        170
                 ....*....|...
gi 518284927 170 TARVIEADWDPGF 182
Cdd:PRK00122 158 EAKRITVDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 10-182 1.03e-71

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 214.20  E-value: 1.03e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  10 PKQPIVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQ-AGQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTN 88
Cdd:COG0806    3 MEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEALRG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  89 REIMVDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKanlkdAFGMKERLIPFLhGQVIKKVD 168
Cdd:COG0806   83 AELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLETGANDVLVVK-----GPGGKEVLIPFV-DEFVPEVD 156

                        170
                 ....*....|....
gi 518284927 169 LTARVIEADWDPGF 182
Cdd:COG0806  157 LEAGRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 13-181 1.92e-71

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 213.22  E-value: 1.92e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927   13 PIVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQAG-QWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNREI 91
Cdd:TIGR02273   1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSkQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927   92 MVDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKAnlkdAFGMKERLIPFLHgQVIKKVDLTA 171
Cdd:TIGR02273  81 FVPREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVVRS----KKGKKEVLIPFVE-EIVKEIDLEK 155

                         170
                  ....*....|
gi 518284927  172 RVIEADWDPG 181
Cdd:TIGR02273 156 KIITVDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 15-97 7.38e-28

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 99.56  E-value: 7.38e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927   15 VLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQA-GQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNREIMV 93
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKKkGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 518284927   94 DSEQ 97
Cdd:pfam01782  81 PRSD 84
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 10-182 2.41e-83

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 243.51  E-value: 2.41e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  10 PKQPIVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQAGQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNR 89
Cdd:PRK00122   4 PEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKGC 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  90 EIMVDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKANLKdafgmKERLIPFLHgQVIKKVDL 169
Cdd:PRK00122  84 ELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLKDKK-----EERLIPFVE-EVVKEVDL 157

                        170
                 ....*....|...
gi 518284927 170 TARVIEADWDPGF 182
Cdd:PRK00122 158 EAKRITVDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 10-182 1.03e-71

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 214.20  E-value: 1.03e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  10 PKQPIVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQ-AGQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTN 88
Cdd:COG0806    3 MEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEALRG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  89 REIMVDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKanlkdAFGMKERLIPFLhGQVIKKVD 168
Cdd:COG0806   83 AELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLETGANDVLVVK-----GPGGKEVLIPFV-DEFVPEVD 156

                        170
                 ....*....|....
gi 518284927 169 LTARVIEADWDPGF 182
Cdd:COG0806  157 LEAGRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 13-181 1.92e-71

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 213.22  E-value: 1.92e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927   13 PIVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQAG-QWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNREI 91
Cdd:TIGR02273   1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSkQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927   92 MVDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKAnlkdAFGMKERLIPFLHgQVIKKVDLTA 171
Cdd:TIGR02273  81 FVPREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVVRS----KKGKKEVLIPFVE-EIVKEIDLEK 155

                         170
                  ....*....|
gi 518284927  172 RVIEADWDPG 181
Cdd:TIGR02273 156 KIITVDWPEG 165
rimM PRK14591
16S rRNA-processing protein RimM; Provisional
 16-179 6.20e-30

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173055 [Multi-domain]  Cd Length: 169  Bit Score: 107.82  E-value: 6.20e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  16 LGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQAGQ--WQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNREIMV 93
Cdd:PRK14591   8 IAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLPATnvWQQLKGESVLKRADKVYIKLANINNADTAKKYVNALIGV 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  94 DSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMVVKanlKDAfgmKERLIPFLHgQVIKKVDLTARV 173
Cdd:PRK14591  88 PKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVCK---EDN---SEYLIPYVK-QYIVSEDLNSKK 160


                 ....*.
gi 518284927 174 IEADWD 179
Cdd:PRK14591 161 IVVDWE 166
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 15-97 7.38e-28

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 99.56  E-value: 7.38e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927   15 VLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFIQQA-GQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNREIMV 93
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKKkGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 518284927   94 DSEQ 97
Cdd:pfam01782  81 PRSD 84
rimM PRK13828
16S rRNA-processing protein RimM; Provisional
 25-177 5.11e-24

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184351 [Multi-domain]  Cd Length: 161  Bit Score: 92.32  E-value: 5.11e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  25 IRGWLRVFSSTENAESIFDYQPWFIQQAGQWQHIELedwKRHSQD-LIIKVKGIDDRDAANLLTNREIMVDSEQLPPLEG 103
Cdd:PRK13828   1 VRGEVRLKSFTEDPLAIADYGPLTTEDGARSFTVAL---ARPAKDgLVARLKGVATREAAEALRGLELYVPRDRLPELDD 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518284927 104 DDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVMvvkaNLKDAFGMKERLIPFLHgQVIKKVDLTARVIEAD 177
Cdd:PRK13828  78 DEFYHADLIGLAAVDTGGALLGRVKAVHNFGAGDIL----EIAPPGGGPTLLLPFTR-AVVPTVDLAAGRVVAD 146
rimM PRK13829
16S rRNA-processing protein RimM; Provisional
 14-158 3.99e-17

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184352 [Multi-domain]  Cd Length: 162  Bit Score: 74.40  E-value: 3.99e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  14 IVLGKMGSAYGIRGWLRVFSSTEnaesIFDYQPWFIQQAGqWQHIEleDWKRHSQDLIIKVKGIDDRDAANLLTNREIMV 93
Cdd:PRK13829   4 TEIGRFGGPYGVQGGLKFRGEPV----VLDLPRVYVEGLG-WRAIE--RAERVGPELVLHLAGVTSREGAEALVGLRVYA 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 518284927  94 DSEQLPPLEGDDYYWKDLMGCQVVTTaGYELGKVIDMMETGSNDVMVVKANLKDAFGMKERLIPF 158
Cdd:PRK13829  77 DDADLPPLEEGSYYYHELRGLPVYVD-GEPLGEVVDVEDAGAQDLLVIRHVGGSLRARATYFVPL 140
rimM PRK14592
16S rRNA-processing protein RimM; Provisional
 14-139 1.07e-12

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173056 [Multi-domain]  Cd Length: 165  Bit Score: 62.82  E-value: 1.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  14 IVLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWfiqQAGQwQHIELEDWKRHSQDLII-KVKGIDDRDAANLLTNREIM 92
Cdd:PRK14592   3 ICLGVITSPHGIKGHVKIKTFTEDPENISAYGKL---TDGS-NTYKISVVSVIGANLVIaKISGINSRTEAELLRNKKLY 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 518284927  93 VDSEQLPPLEGDDYYWKDLMGCQVVTTAGYELGKVIDMMETGSNDVM 139
Cdd:PRK14592  79 VERSKLPNLNEDEFYQSDLIGMEVKLEDNTIYGYIKKIYNFGSCDII 125
rimM PRK14590
16S rRNA-processing protein RimM; Provisional
 14-175 5.41e-10

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173054 [Multi-domain]  Cd Length: 171  Bit Score: 55.63  E-value: 5.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  14 IVLGKMGSAYGIRGWLRVFSSTENAESI----------FDYQpwfiqqaGQWQHIELEDWKRHSQDLIIKVKGIDDRDAA 83
Cdd:PRK14590   1 ISLGQLGKPFGIKGWLRVNVRGETLHTLkapatlklgkEDPQ-------FPESEIALLEIRPHGGKFLVRFEGYDTPEEA 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  84 NLLTNREIMVDSEQLPPLEG-DDYYWKDLMGCQVVTTAGYELG-KVIDMMETGSNDVMV-VKANlkdafgMKERLIPFLH 160
Cdd:PRK14590  74 VKWRGGSLFLPQELLPKIETkGEFYSEDLIGLQAIDETGKPLNwKLTDVQDNPAHPILVfIKGE------GEEILIPFLN 147

                        170
                 ....*....|....*
gi 518284927 161 gQVIKKVDLTARVIE 175
Cdd:PRK14590 148 -VFVGDLDLEKQTIV 161
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 104-177 8.75e-08

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 47.28  E-value: 8.75e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 518284927  104 DDYYWKDLMGCQVVTTAGYELGKVID-MMETGSNDVMVVKANLKDAFGMKERLIPFlhgqVIKKVDLTARVIEAD 177
Cdd:pfam05239   2 DEFYASDLIGLEVYTEDGEKLGKVKDvVIDEGEGRVRYLVVSVGGFLGGKEVLIPF----DKLNVKLGKDRIIVD 72
rimM PRK14594
16S rRNA-processing protein RimM; Provisional
 15-159 5.64e-07

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173058 [Multi-domain]  Cd Length: 166  Bit Score: 47.08  E-value: 5.64e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518284927  15 VLGKMGSAYGIRGWLRVFSSTENAESIFDYQPWFI---QQAGQWQHIELEDWKRHSQDLIIKVKGIDDRDAANLLTNREI 91
Cdd:PRK14594   3 VKGIILSSYGINGYAKVKSISNNFCDFINLKNNKLvlkKSNCSSIEVKVEDVSLKNNSLLLKFEEFNAPEPIKPLIGFEL 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 518284927  92 MVDSEQLPPLEGDDYYWKDLMGCQVVTTaGYELGKVIDMMETGSNDVMVVKANLKDAFgmkerlIPFL 159
Cdd:PRK14594  83 WVDDELASKLEEGEYYFGKLIGYAIVND-GKELGEVVSFFECLNSVLLEVKVGIKLFF------VPFL 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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