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Conserved domains on  [gi|518123092|ref|WP_019293300|]
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hypothetical protein [Lactococcus petauri]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CodB super family cl42794
Purine-cytosine permease or related protein [Nucleotide transport and metabolism];
128-212 2.67e-03

Purine-cytosine permease or related protein [Nucleotide transport and metabolism];


The actual alignment was detected with superfamily member COG1457:

Pssm-ID: 441066 [Multi-domain]  Cd Length: 448  Bit Score: 38.31  E-value: 2.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518123092 128 SYLGLLSLLVcIPWlgwiFGIVWAIVFGINGERWALqnpdnryRDEEEFRKVMDGWNRAGLVAFIIGAVVIVLLLLFFMI 207
Cdd:COG1457  346 NFLLLLGVVL-PPW----GGIMLADYFLVRRGRYDP-------DALFDRRGRYGGVNWVGLIAWLLGSVVGILFVNTPGL 413


                 ....*
gi 518123092 208 LGAAI 212
Cdd:COG1457  414 FGPAL 418
 
Name Accession Description Interval E-value
CodB COG1457
Purine-cytosine permease or related protein [Nucleotide transport and metabolism];
128-212 2.67e-03

Purine-cytosine permease or related protein [Nucleotide transport and metabolism];


Pssm-ID: 441066 [Multi-domain]  Cd Length: 448  Bit Score: 38.31  E-value: 2.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518123092 128 SYLGLLSLLVcIPWlgwiFGIVWAIVFGINGERWALqnpdnryRDEEEFRKVMDGWNRAGLVAFIIGAVVIVLLLLFFMI 207
Cdd:COG1457  346 NFLLLLGVVL-PPW----GGIMLADYFLVRRGRYDP-------DALFDRRGRYGGVNWVGLIAWLLGSVVGILFVNTPGL 413


                 ....*
gi 518123092 208 LGAAI 212
Cdd:COG1457  414 FGPAL 418
 
Name Accession Description Interval E-value
CodB COG1457
Purine-cytosine permease or related protein [Nucleotide transport and metabolism];
128-212 2.67e-03

Purine-cytosine permease or related protein [Nucleotide transport and metabolism];


Pssm-ID: 441066 [Multi-domain]  Cd Length: 448  Bit Score: 38.31  E-value: 2.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518123092 128 SYLGLLSLLVcIPWlgwiFGIVWAIVFGINGERWALqnpdnryRDEEEFRKVMDGWNRAGLVAFIIGAVVIVLLLLFFMI 207
Cdd:COG1457  346 NFLLLLGVVL-PPW----GGIMLADYFLVRRGRYDP-------DALFDRRGRYGGVNWVGLIAWLLGSVVGILFVNTPGL 413


                 ....*
gi 518123092 208 LGAAI 212
Cdd:COG1457  414 FGPAL 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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