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Conserved domains on  [gi|517996087|ref|WP_019166295|]
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lipoate--protein ligase family protein [Staphylococcus delphini]

Protein Classification

biotin/lipoate A/B protein ligase family protein( domain architecture ID 10000572)

biotin/lipoate A/B protein ligase family protein is responsible for attaching biotin and lipoic acid to a specific lysine at the active site of biotin and lipoate-dependent enzymes, respectively

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
14-264 2.66e-54

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


:

Pssm-ID: 439865  Cd Length: 246  Bit Score: 176.19  E-value: 2.66e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  14 RYVDHSSgLEPMQSFAFDDTFSESVGADLSPSVVRTWVHQHTIILGIHDSRLPYLKdgIQYLtDERGYNAIVRNSGGLGV 93
Cdd:COG0095    1 RLIDSGS-TDPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVN--LEYV-EEHGIPVVRRISGGGAV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  94 VLDQGILNISLMFKGKTE-VTIDEAFTVMYLLMSQMFED-----DFTeiatheithsycpGKFDLSINNQKFAGISQRRV 167
Cdd:COG0095   77 YHDPGNLNYSLILPEDDVpLSIEESYRKLLEPILEALRKlgvdaEFS-------------GRNDIVVDGRKISGNAQRRR 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087 168 RGGIAVQIYLCVEGSGSERAELMRDFYERALkgettKFTYPDIHpSSMASLEELLGRPITVQDVMFKLLYAIKDLGGQLN 247
Cdd:COG0095  144 KGAVLHHGTLLVDGDLEKLAKVLRVPYEKLR-----DKGIKSVR-SRVTNLSELLGTDITREEVKEALLEAFAEVLGVLE 217
                        250
                 ....*....|....*..
gi 517996087 248 MDPITPHEWERYEHYYE 264
Cdd:COG0095  218 PGELTDEELEAAEELAE 234
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
14-264 2.66e-54

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 176.19  E-value: 2.66e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  14 RYVDHSSgLEPMQSFAFDDTFSESVGADLSPSVVRTWVHQHTIILGIHDSRLPYLKdgIQYLtDERGYNAIVRNSGGLGV 93
Cdd:COG0095    1 RLIDSGS-TDPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVN--LEYV-EEHGIPVVRRISGGGAV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  94 VLDQGILNISLMFKGKTE-VTIDEAFTVMYLLMSQMFED-----DFTeiatheithsycpGKFDLSINNQKFAGISQRRV 167
Cdd:COG0095   77 YHDPGNLNYSLILPEDDVpLSIEESYRKLLEPILEALRKlgvdaEFS-------------GRNDIVVDGRKISGNAQRRR 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087 168 RGGIAVQIYLCVEGSGSERAELMRDFYERALkgettKFTYPDIHpSSMASLEELLGRPITVQDVMFKLLYAIKDLGGQLN 247
Cdd:COG0095  144 KGAVLHHGTLLVDGDLEKLAKVLRVPYEKLR-----DKGIKSVR-SRVTNLSELLGTDITREEVKEALLEAFAEVLGVLE 217
                        250
                 ....*....|....*..
gi 517996087 248 MDPITPHEWERYEHYYE 264
Cdd:COG0095  218 PGELTDEELEAAEELAE 234
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
14-239 8.22e-51

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 165.89  E-value: 8.22e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  14 RYVDHSSGLEPMQSFAFDDTFSESVGADLSPsVVRTWVHQHTIILGIHDSRLPYLKDGiqyLTDERGYNAIVRNSGGLGV 93
Cdd:cd16443    1 MRLIDSSGDPPAENLALDEALLRSVAAPPTL-RLYLWQNPPTVVIGRFQNPLEEVNLE---YAEEDGIPVVRRPSGGGAV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  94 VLDQGILNISLMFKgKTEVTIDEAFTVMYLLMSQMFEDDFTEIATHEithsycPGKFDLSINNQKFAGISQRRVRGGIAV 173
Cdd:cd16443   77 FHDLGNLNYSLILP-KEHPSIDESYRALSQPVIKALRKLGVEAEFGG------VGRNDLVVGGKKISGSAQRRTKGRILH 149
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517996087 174 QIYLCVEGSGSERAELMRDFYERALKGEttkftyPDIHPSSMASLEELLGRPITVQDVMFKLLYAI 239
Cdd:cd16443  150 HGTLLVDVDLEKLARVLNVPYEKLKSKG------PKSVRSRVTNLSELLGRDITVEEVKNALLEAF 209
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
79-179 7.69e-09

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 52.83  E-value: 7.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087   79 RGYNAIVRNSGGLG---VVLDQ--GILNISLMF-KGKTEVTIDEAFTVMYLLMSQMFEDDFteIATHEITHSYCPGK--F 150
Cdd:pfam03099  23 GGVVVVRRQTGGRGrggNVWHSpkGCLTYSLLLsKEHPNVDPSVLEFYVLELVLAVLEALG--LYKPGISGIPCFVKwpN 100
                          90       100
                  ....*....|....*....|....*....
gi 517996087  151 DLSINNQKFAGISQRRVRGGIAVQIYLCV 179
Cdd:pfam03099 101 DLYVNGRKLAGILQRSTRGGTLHHGVIGL 129
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
14-264 2.66e-54

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 176.19  E-value: 2.66e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  14 RYVDHSSgLEPMQSFAFDDTFSESVGADLSPSVVRTWVHQHTIILGIHDSRLPYLKdgIQYLtDERGYNAIVRNSGGLGV 93
Cdd:COG0095    1 RLIDSGS-TDPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVN--LEYV-EEHGIPVVRRISGGGAV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  94 VLDQGILNISLMFKGKTE-VTIDEAFTVMYLLMSQMFED-----DFTeiatheithsycpGKFDLSINNQKFAGISQRRV 167
Cdd:COG0095   77 YHDPGNLNYSLILPEDDVpLSIEESYRKLLEPILEALRKlgvdaEFS-------------GRNDIVVDGRKISGNAQRRR 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087 168 RGGIAVQIYLCVEGSGSERAELMRDFYERALkgettKFTYPDIHpSSMASLEELLGRPITVQDVMFKLLYAIKDLGGQLN 247
Cdd:COG0095  144 KGAVLHHGTLLVDGDLEKLAKVLRVPYEKLR-----DKGIKSVR-SRVTNLSELLGTDITREEVKEALLEAFAEVLGVLE 217
                        250
                 ....*....|....*..
gi 517996087 248 MDPITPHEWERYEHYYE 264
Cdd:COG0095  218 PGELTDEELEAAEELAE 234
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
14-239 8.22e-51

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 165.89  E-value: 8.22e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  14 RYVDHSSGLEPMQSFAFDDTFSESVGADLSPsVVRTWVHQHTIILGIHDSRLPYLKDGiqyLTDERGYNAIVRNSGGLGV 93
Cdd:cd16443    1 MRLIDSSGDPPAENLALDEALLRSVAAPPTL-RLYLWQNPPTVVIGRFQNPLEEVNLE---YAEEDGIPVVRRPSGGGAV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  94 VLDQGILNISLMFKgKTEVTIDEAFTVMYLLMSQMFEDDFTEIATHEithsycPGKFDLSINNQKFAGISQRRVRGGIAV 173
Cdd:cd16443   77 FHDLGNLNYSLILP-KEHPSIDESYRALSQPVIKALRKLGVEAEFGG------VGRNDLVVGGKKISGSAQRRTKGRILH 149
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517996087 174 QIYLCVEGSGSERAELMRDFYERALKGEttkftyPDIHPSSMASLEELLGRPITVQDVMFKLLYAI 239
Cdd:cd16443  150 HGTLLVDVDLEKLARVLNVPYEKLKSKG------PKSVRSRVTNLSELLGRDITVEEVKNALLEAF 209
BPL_LplA_LipB cd16435
biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), ...
44-239 3.83e-21

biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), lipoate-protein ligase A (LplA) and octanoyl-[acyl carrier protein]-protein acyltransferase (LipB). Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LplA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes.


Pssm-ID: 319740  Cd Length: 198  Bit Score: 88.36  E-value: 3.83e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087  44 PSVVRTWVHQHTIILGIHDSRLPYLKDGIQyltDERGYNAIVRNSGGLGVVLDQGILNISLMFKGKTEVTIDEAFTVMYL 123
Cdd:cd16435   29 SSTLLLWEHPTTVTLGRLDRELPHLELAKK---IERGYELVVRNRGGRAVSHDPGQLVFSPVIGPNVEFMISKFNLIIEE 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087 124 LMSQMFEDdFTEIATHEithsycPGKFDLSINNQKFAGISQRRVRGGIAVQIYLCVEGSGSERAELMRDFYEralkgett 203
Cdd:cd16435  106 GIRDAIAD-FGQSAEVK------WGRNDLWIDNRKVCGIAVRVVKEAIFHGIALNLNQDLENFTEIIPCGYK-------- 170
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 517996087 204 kftypdihPSSMASLEELLGRPITVQDVMFKLLYAI 239
Cdd:cd16435  171 --------PERVTSLSLELGRKVTVEQVLERVLAAF 198
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
79-179 7.69e-09

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 52.83  E-value: 7.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517996087   79 RGYNAIVRNSGGLG---VVLDQ--GILNISLMF-KGKTEVTIDEAFTVMYLLMSQMFEDDFteIATHEITHSYCPGK--F 150
Cdd:pfam03099  23 GGVVVVRRQTGGRGrggNVWHSpkGCLTYSLLLsKEHPNVDPSVLEFYVLELVLAVLEALG--LYKPGISGIPCFVKwpN 100
                          90       100
                  ....*....|....*....|....*....
gi 517996087  151 DLSINNQKFAGISQRRVRGGIAVQIYLCV 179
Cdd:pfam03099 101 DLYVNGRKLAGILQRSTRGGTLHHGVIGL 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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