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Conserved domains on  [gi|517995843|ref|WP_019166051|]
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thioredoxin domain-containing protein [Staphylococcus delphini]

Protein Classification

DsbA family protein( domain architecture ID 11447254)

DsbA family protein belongs to the thioredoxin superfamily of proteins containing a redox active CXXC motif, similar to DsbA that is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm

CATH:  3.40.30.10
Gene Ontology:  GO:0015036
SCOP:  3000031

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DsbG COG1651
Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, ...
57-227 1.25e-35

Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 441257 [Multi-domain]  Cd Length: 152  Bit Score: 123.18  E-value: 1.25e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  57 KVLLVEFGDFKCPYCGDFERNIkPKLEKEYIDnNKVEFRYVNVLIHGDESELGAKAALAVnqYAPDKYWEFHHALFEQQP 136
Cdd:COG1651    1 KVTVVEFFDYQCPYCARFHPEL-PELLKKYVD-GKVRVVYRPFPLLHPDSLRAARAALCA--ADQGKFWAFHDALFANQP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843 137 NnkddvgsqhwLTDDLIQQQLQKLDLSeqeRKQITAAYRDekGEMAKRAQEDHTLAKKEEVPYVPALYVNGKQVEDETDF 216
Cdd:COG1651   77 A----------LTDDDLREIAKEAGLD---AAKFDACLNS--GAVAAKVEADTALAQALGVTGTPTFVVNGKLVSGAVPY 141
                        170
                 ....*....|.
gi 517995843 217 DAIKDEIDKAL 227
Cdd:COG1651  142 EELEAALDAAL 152
 
Name Accession Description Interval E-value
DsbG COG1651
Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, ...
57-227 1.25e-35

Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441257 [Multi-domain]  Cd Length: 152  Bit Score: 123.18  E-value: 1.25e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  57 KVLLVEFGDFKCPYCGDFERNIkPKLEKEYIDnNKVEFRYVNVLIHGDESELGAKAALAVnqYAPDKYWEFHHALFEQQP 136
Cdd:COG1651    1 KVTVVEFFDYQCPYCARFHPEL-PELLKKYVD-GKVRVVYRPFPLLHPDSLRAARAALCA--ADQGKFWAFHDALFANQP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843 137 NnkddvgsqhwLTDDLIQQQLQKLDLSeqeRKQITAAYRDekGEMAKRAQEDHTLAKKEEVPYVPALYVNGKQVEDETDF 216
Cdd:COG1651   77 A----------LTDDDLREIAKEAGLD---AAKFDACLNS--GAVAAKVEADTALAQALGVTGTPTFVVNGKLVSGAVPY 141
                        170
                 ....*....|.
gi 517995843 217 DAIKDEIDKAL 227
Cdd:COG1651  142 EELEAALDAAL 152
Thioredoxin_4 pfam13462
Thioredoxin;
45-225 4.40e-27

Thioredoxin;


Pssm-ID: 433227 [Multi-domain]  Cd Length: 164  Bit Score: 101.65  E-value: 4.40e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843   45 TQKQPTQGKKESKVLLVEFGDFKCPYCGDFERNIKpKLEKEYIDNNKVEFRYVNVLIHGDESEL-GAKAALAVNQYAPDK 123
Cdd:pfam13462   1 TPTDPVIGNPDAPVTVVEYADLRCPHCAKFHEEVL-KLLEEYIDTGKVRFIIRDFPLDGEGESLlAAMAARCAGDQSPEY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  124 YWEFHHALFEQQPnnkddvgsqHWLTDDLIQQQLQKLDlseqerKQITAAYRDEKgeMAKRAQEDHTLAKKEEVPYVPAL 203
Cdd:pfam13462  80 FLVIDKLLYSQQE---------EWAQDLELAALAGLKD------EEFEACLEEED--FLALVMADVKEARAAGINFTPTF 142
                         170       180
                  ....*....|....*....|..
gi 517995843  204 YVNGKQVEDETDFDAIKDEIDK 225
Cdd:pfam13462 143 IINGKKVDGPLTYEELKKLIDD 164
DsbA_Com1_like cd03023
DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer ...
52-224 6.01e-20

DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.


Pssm-ID: 239321 [Multi-domain]  Cd Length: 154  Bit Score: 82.64  E-value: 6.01e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  52 GKKESKVLLVEFGDFKCPYCgdfeRNIKPKLEKEYIDNNKVEFRYVNVLIHGDESELGAKAALAVNQYAPDKYWEFHHAL 131
Cdd:cd03023    1 GNPNGDVTIVEFFDYNCGYC----KKLAPELEKLLKEDPDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNAL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843 132 FeqqpnnkddvGSQHWLTDDLIQQQLQKLDLSEqerKQITAAYRDEkgEMAKRAQEDHTLAKKEEVPYVPALYVNGKQVE 211
Cdd:cd03023   77 M----------ATRGRLNEESLLRIAKKAGLDE---AKLKKDMDDP--EIEATIDKNRQLARALGITGTPAFIIGDTVIP 141
                        170
                 ....*....|...
gi 517995843 212 DETDFDAIKDEID 224
Cdd:cd03023  142 GAVPADTLKEAID 154
 
Name Accession Description Interval E-value
DsbG COG1651
Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, ...
57-227 1.25e-35

Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441257 [Multi-domain]  Cd Length: 152  Bit Score: 123.18  E-value: 1.25e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  57 KVLLVEFGDFKCPYCGDFERNIkPKLEKEYIDnNKVEFRYVNVLIHGDESELGAKAALAVnqYAPDKYWEFHHALFEQQP 136
Cdd:COG1651    1 KVTVVEFFDYQCPYCARFHPEL-PELLKKYVD-GKVRVVYRPFPLLHPDSLRAARAALCA--ADQGKFWAFHDALFANQP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843 137 NnkddvgsqhwLTDDLIQQQLQKLDLSeqeRKQITAAYRDekGEMAKRAQEDHTLAKKEEVPYVPALYVNGKQVEDETDF 216
Cdd:COG1651   77 A----------LTDDDLREIAKEAGLD---AAKFDACLNS--GAVAAKVEADTALAQALGVTGTPTFVVNGKLVSGAVPY 141
                        170
                 ....*....|.
gi 517995843 217 DAIKDEIDKAL 227
Cdd:COG1651  142 EELEAALDAAL 152
Thioredoxin_4 pfam13462
Thioredoxin;
45-225 4.40e-27

Thioredoxin;


Pssm-ID: 433227 [Multi-domain]  Cd Length: 164  Bit Score: 101.65  E-value: 4.40e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843   45 TQKQPTQGKKESKVLLVEFGDFKCPYCGDFERNIKpKLEKEYIDNNKVEFRYVNVLIHGDESEL-GAKAALAVNQYAPDK 123
Cdd:pfam13462   1 TPTDPVIGNPDAPVTVVEYADLRCPHCAKFHEEVL-KLLEEYIDTGKVRFIIRDFPLDGEGESLlAAMAARCAGDQSPEY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  124 YWEFHHALFEQQPnnkddvgsqHWLTDDLIQQQLQKLDlseqerKQITAAYRDEKgeMAKRAQEDHTLAKKEEVPYVPAL 203
Cdd:pfam13462  80 FLVIDKLLYSQQE---------EWAQDLELAALAGLKD------EEFEACLEEED--FLALVMADVKEARAAGINFTPTF 142
                         170       180
                  ....*....|....*....|..
gi 517995843  204 YVNGKQVEDETDFDAIKDEIDK 225
Cdd:pfam13462 143 IINGKKVDGPLTYEELKKLIDD 164
DsbA_Com1_like cd03023
DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer ...
52-224 6.01e-20

DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.


Pssm-ID: 239321 [Multi-domain]  Cd Length: 154  Bit Score: 82.64  E-value: 6.01e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  52 GKKESKVLLVEFGDFKCPYCgdfeRNIKPKLEKEYIDNNKVEFRYVNVLIHGDESELGAKAALAVNQYAPDKYWEFHHAL 131
Cdd:cd03023    1 GNPNGDVTIVEFFDYNCGYC----KKLAPELEKLLKEDPDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNAL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843 132 FeqqpnnkddvGSQHWLTDDLIQQQLQKLDLSEqerKQITAAYRDEkgEMAKRAQEDHTLAKKEEVPYVPALYVNGKQVE 211
Cdd:cd03023   77 M----------ATRGRLNEESLLRIAKKAGLDE---AKLKKDMDDP--EIEATIDKNRQLARALGITGTPAFIIGDTVIP 141
                        170
                 ....*....|...
gi 517995843 212 DETDFDAIKDEID 224
Cdd:cd03023  142 GAVPADTLKEAID 154
DsbA_family cd02972
DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) ...
60-135 6.56e-13

DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.


Pssm-ID: 239270 [Multi-domain]  Cd Length: 98  Bit Score: 62.42  E-value: 6.56e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517995843  60 LVEFGDFKCPYCGDFERNIKPKLekeYIDNNKVEFRYVNVLIHGDESELGAKAALAVNQ-YAPDKYWEFHHALFEQQ 135
Cdd:cd02972    1 IVEFFDPLCPYCYLFEPELEKLL---YADDGGVRVVYRPFPLLGGMPPNSLAAARAALAaAAQGKFEALHEALADTA 74
DsbA_DsbA cd03019
DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein ...
54-208 1.29e-08

DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.


Pssm-ID: 239317 [Multi-domain]  Cd Length: 178  Bit Score: 52.68  E-value: 1.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  54 KESKVLLVEFGDFKCPYCGDFERNIKPKLEKEyidNNKVEFRYVNVLIHGDESELGAKAALAVNQYAPDKywEFHHALFE 133
Cdd:cd03019   13 PSGKPEVIEFFSYGCPHCYNFEPILEAWVKKL---PKDVKFEKVPVVFGGGEGEPLARAFYAAEALGLED--KLHAALFE 87
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517995843 134 QQPNNKddvgsQHWLTDDLIQQQLQKLDLSeqeRKQITAAYRD-EKGEMAKRAQEdhtLAKKEEVPYVPALYVNGK 208
Cdd:cd03019   88 AIHEKR-----KRLLDPDDIRKIFLSQGVD---KKKFDAAYNSfSVKALVAKAEK---LAKKYKITGVPAFVVNGK 152
COG3531 COG3531
Predicted protein-disulfide isomerase, contains CxxC motif [Posttranslational modification, ...
94-226 4.05e-03

Predicted protein-disulfide isomerase, contains CxxC motif [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442753 [Multi-domain]  Cd Length: 206  Bit Score: 37.15  E-value: 4.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517995843  94 FRYVNVLIHGDE---SELGAKAALAVNQYAPDKYWEFHHALfeQQPNNKDdvgsQHWLTD-DLIQQQLQKLDLSEQerkQ 169
Cdd:COG3531   76 EAYNDLLRDGTFvldSEPACRAVLAARELAPERELAMLHAI--QRAFYVE----GRDISDpEVLAELAAELGLDAE---A 146
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517995843 170 ITAAYRDEkgEMAKRAQEDHTLAKKEEVPYVPAL-YVNGKQVE----DETDFDAIKDEIDKA 226
Cdd:COG3531  147 FAAALASE--ETRQHIQQEFALARQLGVQGFPTLvLEQGGQLYllprGYGDPEALLAALEQL 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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