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Conserved domains on  [gi|517912251|ref|WP_019082459|]
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prepilin-type N-terminal cleavage/methylation domain-containing protein [Yersinia enterocolitica]

Protein Classification

PilV family protein( domain architecture ID 706969)

PilV family protein, similar to type IV pili (T4P) PilV protein; T4P, found on the surface of many Gram-negative and Gram-positive bacteria, facilitates biological functions important for bacterial pathogenicity, including twitching motility, DNA uptake, and adhesion to host cells

Gene Ontology:  GO:0044096
PubMed:  30988511|23204365

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PilV COG4967
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];
10-69 1.74e-17

Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];


:

Pssm-ID: 443993 [Multi-domain]  Cd Length: 86  Bit Score: 71.55  E-value: 1.74e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 517912251  10 RQYAKNHTQQGFSLPEALIAALFFSVSLLGLLQYHQALLQGFSSLWQQRQAWSLLNQHID 69
Cdd:COG4967    2 SRRRRRRRQRGFTLIEVLVALVILSIGLLGLAGLQAASLRSSQDARQRTQAALLAQDLLE 61
T2SSppdC pfam12528
Type II secretion prepilin peptidase dependent protein C;
43-123 3.77e-17

Type II secretion prepilin peptidase dependent protein C;


:

Pssm-ID: 432611  Cd Length: 80  Bit Score: 70.57  E-value: 3.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517912251   43 YHQALLQGFSSLWQQRQAWSLLNQHIDSGGDKPAKALTSgIKPHWQYHQFIKRIDGECTEFTFTLRIQPKQQAELSRWFC 122
Cdd:pfam12528   1 YQQALLQGFQRQWQQRQAWRLAHQQLELYSAPTALGALS-PPPGWQVERMEQTVSAGCVSVTVTLTSPQGRQVELSRWHC 79


                  .
gi 517912251  123 N 123
Cdd:pfam12528  80 P 80
 
Name Accession Description Interval E-value
PilV COG4967
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];
10-69 1.74e-17

Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];


Pssm-ID: 443993 [Multi-domain]  Cd Length: 86  Bit Score: 71.55  E-value: 1.74e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 517912251  10 RQYAKNHTQQGFSLPEALIAALFFSVSLLGLLQYHQALLQGFSSLWQQRQAWSLLNQHID 69
Cdd:COG4967    2 SRRRRRRRQRGFTLIEVLVALVILSIGLLGLAGLQAASLRSSQDARQRTQAALLAQDLLE 61
T2SSppdC pfam12528
Type II secretion prepilin peptidase dependent protein C;
43-123 3.77e-17

Type II secretion prepilin peptidase dependent protein C;


Pssm-ID: 432611  Cd Length: 80  Bit Score: 70.57  E-value: 3.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517912251   43 YHQALLQGFSSLWQQRQAWSLLNQHIDSGGDKPAKALTSgIKPHWQYHQFIKRIDGECTEFTFTLRIQPKQQAELSRWFC 122
Cdd:pfam12528   1 YQQALLQGFQRQWQQRQAWRLAHQQLELYSAPTALGALS-PPPGWQVERMEQTVSAGCVSVTVTLTSPQGRQVELSRWHC 79


                  .
gi 517912251  123 N 123
Cdd:pfam12528  80 P 80
PRK10332 PRK10332
prepilin-type N-terminal cleavage/methylation domain-containing protein;
18-61 8.42e-08

prepilin-type N-terminal cleavage/methylation domain-containing protein;


Pssm-ID: 182384 [Multi-domain]  Cd Length: 107  Bit Score: 47.09  E-value: 8.42e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 517912251  18 QQGFSLPEALIAALFFSVSLLGLLQYHQALLQGFSSLWQQRQAW 61
Cdd:PRK10332   8 QRGFSLPEVLLAMVLMVMIVTALSGYQRTLMNSFASRNQYRQLW 51
 
Name Accession Description Interval E-value
PilV COG4967
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];
10-69 1.74e-17

Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];


Pssm-ID: 443993 [Multi-domain]  Cd Length: 86  Bit Score: 71.55  E-value: 1.74e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 517912251  10 RQYAKNHTQQGFSLPEALIAALFFSVSLLGLLQYHQALLQGFSSLWQQRQAWSLLNQHID 69
Cdd:COG4967    2 SRRRRRRRQRGFTLIEVLVALVILSIGLLGLAGLQAASLRSSQDARQRTQAALLAQDLLE 61
T2SSppdC pfam12528
Type II secretion prepilin peptidase dependent protein C;
43-123 3.77e-17

Type II secretion prepilin peptidase dependent protein C;


Pssm-ID: 432611  Cd Length: 80  Bit Score: 70.57  E-value: 3.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517912251   43 YHQALLQGFSSLWQQRQAWSLLNQHIDSGGDKPAKALTSgIKPHWQYHQFIKRIDGECTEFTFTLRIQPKQQAELSRWFC 122
Cdd:pfam12528   1 YQQALLQGFQRQWQQRQAWRLAHQQLELYSAPTALGALS-PPPGWQVERMEQTVSAGCVSVTVTLTSPQGRQVELSRWHC 79


                  .
gi 517912251  123 N 123
Cdd:pfam12528  80 P 80
PRK10332 PRK10332
prepilin-type N-terminal cleavage/methylation domain-containing protein;
18-61 8.42e-08

prepilin-type N-terminal cleavage/methylation domain-containing protein;


Pssm-ID: 182384 [Multi-domain]  Cd Length: 107  Bit Score: 47.09  E-value: 8.42e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 517912251  18 QQGFSLPEALIAALFFSVSLLGLLQYHQALLQGFSSLWQQRQAW 61
Cdd:PRK10332   8 QRGFSLPEVLLAMVLMVMIVTALSGYQRTLMNSFASRNQYRQLW 51
PulJ COG4795
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ...
 13-66 4.69e-04

Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443823 [Multi-domain]  Cd Length: 118  Bit Score: 37.30  E-value: 4.69e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 517912251  13 AKNHTQQGFSLPEALIAALFFSVSLLGLLQYHQALLQGFSSLWQQRQAWSLLNQ 66
Cdd:COG4795    3 RARRRQRGFTLLELLVALAIFALLLLAAYRGLDSVLRSRERLEQQAERLQELQR 56
PRK10557 PRK10557
prepilin peptidase-dependent protein;
13-66 4.79e-03

prepilin peptidase-dependent protein;


Pssm-ID: 236714  Cd Length: 192  Bit Score: 35.34  E-value: 4.79e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 517912251  13 AKNHTQQGFSLPEALIAALFFSVSLLGLLQYHQALLQGFSSLWQQRQAWSLLNQ 66
Cdd:PRK10557   1 AMPVKQRGFSLLEVLLAMAIGSVLLLGAARFLPALQRQILTLTRQLRLEDEIWQ 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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