NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|517730112|ref|WP_018900320|]
View 

MULTISPECIES: hypothetical protein [unclassified Rhizobium]

Protein Classification

COG4315 family protein( domain architecture ID 11468205)

COG4315 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG4315 COG4315
Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];
27-126 6.47e-48

Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];


:

Pssm-ID: 443456 [Multi-domain]  Cd Length: 108  Bit Score: 149.29  E-value: 6.47e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517730112  27 KTVDSAKGKVLAGENGMSLYTFKKDTKD--VSNCYDDCAKNWPPLMADGNAKPEGA----YSIVDRKDGMKQWAKDGMPL 100
Cdd:COG4315    1 TAASTELGPVLVDADGMTLYTFDKDTAGpgKSACDGACAANWPPLLADGDAKASGLdtgdFGTITRADGTKQWTYKGWPL 80

                         90       100
                 ....*....|....*....|....*.
gi 517730112 101 YFWVKDKKMGDITGDGVKDVWDVAKP 126
Cdd:COG4315   81 YYYAGDKKPGDTKGDGVGGVWHVVKP 106
 
Name Accession Description Interval E-value
COG4315 COG4315
Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];
27-126 6.47e-48

Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];


Pssm-ID: 443456 [Multi-domain]  Cd Length: 108  Bit Score: 149.29  E-value: 6.47e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517730112  27 KTVDSAKGKVLAGENGMSLYTFKKDTKD--VSNCYDDCAKNWPPLMADGNAKPEGA----YSIVDRKDGMKQWAKDGMPL 100
Cdd:COG4315    1 TAASTELGPVLVDADGMTLYTFDKDTAGpgKSACDGACAANWPPLLADGDAKASGLdtgdFGTITRADGTKQWTYKGWPL 80

                         90       100
                 ....*....|....*....|....*.
gi 517730112 101 YFWVKDKKMGDITGDGVKDVWDVAKP 126
Cdd:COG4315   81 YYYAGDKKPGDTKGDGVGGVWHVVKP 106
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 30-126 9.00e-21

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 84.74  E-value: 9.00e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517730112  30 DSAK-GKVLAGENGMSLYTFKKDTKD--VSNCYDDCAKNWPPLMADGNAKPEG----AYSIVDRKDGMKQWAKDGMPLYF 102
Cdd:NF040526  74 TVAKlGKVLTDSAGLTLYRFDKDTAEppKSNCDGDCATTWPPVPADDAVAAAGvdkaLLGEVTRADGTKQLTVGGWPAYR 153

                         90       100
                 ....*....|....*....|....
gi 517730112 103 WVKDKKMGDITGDGVKDVWDVAKP 126
Cdd:NF040526 154 YAKDTKAGDAKGQGVGGTWYALAP 177
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 34-126 7.46e-19

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 79.73  E-value: 7.46e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517730112  34 GKVLAGENGMSLYTFKKDTKD--VSNCYDDCAKNWPPLMADGNAKPEG----AYSIVDRKDGMKQWAKDGMPLYFWVKDK 107
Cdd:NF040526 205 GEIVVDKNGMTVYRFTKDSAWpmKTACTGACLEKWPPVAPVDKNDTKGidkkGLMTFTRPDGTKQQTVDCWPVYTFAGDK 284

                         90
                 ....*....|....*....
gi 517730112 108 KMGDITGDGVKDVWDVAKP 126
Cdd:NF040526 285 KPGDTNGQGVGGTWYAVEP 303
Lipoprotein_15 pfam03640
Secreted repeat of unknown function; This family occurs as tandem repeats in a set of ...
 83-124 7.34e-12

Secreted repeat of unknown function; This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif.


Pssm-ID: 427419 [Multi-domain]  Cd Length: 45  Bit Score: 55.72  E-value: 7.34e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 517730112   83 IVDRKDGMKQWAKDGMPLYFWVKDKKMGDITGDGVKD---VWDVA 124
Cdd:pfam03640   1 TVTRDDGTKQVAYKGMPLYTFAKDTKPGDKTGDGVGAcagVWPPV 45
 
Name Accession Description Interval E-value
COG4315 COG4315
Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];
27-126 6.47e-48

Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];


Pssm-ID: 443456 [Multi-domain]  Cd Length: 108  Bit Score: 149.29  E-value: 6.47e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517730112  27 KTVDSAKGKVLAGENGMSLYTFKKDTKD--VSNCYDDCAKNWPPLMADGNAKPEGA----YSIVDRKDGMKQWAKDGMPL 100
Cdd:COG4315    1 TAASTELGPVLVDADGMTLYTFDKDTAGpgKSACDGACAANWPPLLADGDAKASGLdtgdFGTITRADGTKQWTYKGWPL 80

                         90       100
                 ....*....|....*....|....*.
gi 517730112 101 YFWVKDKKMGDITGDGVKDVWDVAKP 126
Cdd:COG4315   81 YYYAGDKKPGDTKGDGVGGVWHVVKP 106
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 30-126 9.00e-21

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 84.74  E-value: 9.00e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517730112  30 DSAK-GKVLAGENGMSLYTFKKDTKD--VSNCYDDCAKNWPPLMADGNAKPEG----AYSIVDRKDGMKQWAKDGMPLYF 102
Cdd:NF040526  74 TVAKlGKVLTDSAGLTLYRFDKDTAEppKSNCDGDCATTWPPVPADDAVAAAGvdkaLLGEVTRADGTKQLTVGGWPAYR 153

                         90       100
                 ....*....|....*....|....
gi 517730112 103 WVKDKKMGDITGDGVKDVWDVAKP 126
Cdd:NF040526 154 YAKDTKAGDAKGQGVGGTWYALAP 177
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 34-126 7.46e-19

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 79.73  E-value: 7.46e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517730112  34 GKVLAGENGMSLYTFKKDTKD--VSNCYDDCAKNWPPLMADGNAKPEG----AYSIVDRKDGMKQWAKDGMPLYFWVKDK 107
Cdd:NF040526 205 GEIVVDKNGMTVYRFTKDSAWpmKTACTGACLEKWPPVAPVDKNDTKGidkkGLMTFTRPDGTKQQTVDCWPVYTFAGDK 284

                         90
                 ....*....|....*....
gi 517730112 108 KMGDITGDGVKDVWDVAKP 126
Cdd:NF040526 285 KPGDTNGQGVGGTWYAVEP 303
Lipoprotein_15 pfam03640
Secreted repeat of unknown function; This family occurs as tandem repeats in a set of ...
 83-124 7.34e-12

Secreted repeat of unknown function; This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif.


Pssm-ID: 427419 [Multi-domain]  Cd Length: 45  Bit Score: 55.72  E-value: 7.34e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 517730112   83 IVDRKDGMKQWAKDGMPLYFWVKDKKMGDITGDGVKD---VWDVA 124
Cdd:pfam03640   1 TVTRDDGTKQVAYKGMPLYTFAKDTKPGDKTGDGVGAcagVWPPV 45
Lipoprotein_15 pfam03640
Secreted repeat of unknown function; This family occurs as tandem repeats in a set of ...
 28-69 6.67e-09

Secreted repeat of unknown function; This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif.


Pssm-ID: 427419 [Multi-domain]  Cd Length: 45  Bit Score: 48.40  E-value: 6.67e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 517730112   28 TVDSAKGKVLAGENGMSLYTFKKDTKD---VSNCYDDCAKNWPPL 69
Cdd:pfam03640   1 TVTRDDGTKQVAYKGMPLYTFAKDTKPgdkTGDGVGACAGVWPPV 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH