|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
8-622 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 1009.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 8 SKDAASTGTGYRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEID- 86
Cdd:PRK09111 1 APDAAAAATPYRVLARKYRPQTFDDL-IGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 87 KPTIDLRTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEP 166
Cdd:PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 167 PEHVKFIFATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIA 246
Cdd:PRK09111 160 PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 247 HGAGVVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANDPS 326
Cdd:PRK09111 240 HGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 327 LSEVERTKAAEFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRLAEFSGDNSGPRP 406
Cdd:PRK09111 320 LSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAADLPTPDEALRRLQEGPPSPGGGGG 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 407 AAPPSgngggngtRVSYQNSVAARAAETAPSPPQPSAPVAMLRAVPSSQPETMSVGRIEPKPAealkPLVPVNSVNDIVN 486
Cdd:PRK09111 400 GPPGG--------GGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQ----PAVRLNSFEDIVA 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 487 LATEKRDPKLKAMVRTFLRPVRIEAGRLDVSLAPGAPTTLLNELAVKLKEWTGIHWIVSLSRDEGQPTLVEAEARTREQH 566
Cdd:PRK09111 468 LAEEKRDIKLKAAVERDVRLVRFEPGRLEFALAPGAPRDLAQRLARKLEEWTGRRWVVSVSREGGQPTLAEQEAAAREER 547
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259200 567 VIDARQDPDVAAILAHFPGAKIIDVRVRapepeEEGEATPPAAAESEEGDILPGDD 622
Cdd:PRK09111 548 EAAAEADPLVAAVLAAFPGAKIVDVRDL-----APEAAEEEPAAEAEDPDALPDDD 598
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
18-379 |
3.51e-159 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 460.50 E-value: 3.51e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrTPGE 97
Cdd:TIGR02397 1 YQVLARKYRPQTFED-VIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC----NECE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:TIGR02397 156 EPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDV 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPdaANDPSLSEVERTKAAE 337
Cdd:TIGR02397 236 NELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTP--SNLLAVLESEQEFLKE 313
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 517259200 338 FAKGVAVTTLSRIWQMLLKGIPETEGS--SRTagAAEMVLIRLA 379
Cdd:TIGR02397 314 LALKLSLEFLLRLLDILLEALKDLRFSndPRI--WLEMTLLRLL 355
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
27-380 |
1.18e-155 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 450.80 E-value: 1.18e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 27 PKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPtidlrtPGE--HCQAIME 104
Cdd:COG2812 6 PQTFDDV-VGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEP------CGEceSCRAIAA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 105 GRHVDVIEMDA-ASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVP 183
Cdd:COG2812 79 GSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 184 ITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAgvvqaeavrgmlgL 263
Cdd:COG2812 159 PTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAFGL-------------L 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 264 ADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAanDPSLSEVERTKAAEFAKGVA 343
Cdd:COG2812 226 DRRELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDA--ELLVNEDERERLQELARRLS 303
|
330 340 350
....*....|....*....|....*....|....*..
gi 517259200 344 VTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAH 380
Cdd:COG2812 304 PERLLRAIQILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
17-390 |
3.78e-130 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 393.85 E-value: 3.78e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 17 GYRVLARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTpg 96
Cdd:PRK05563 2 MYQALYRKWRPQTFED-VVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 97 ehCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFAT 176
Cdd:PRK05563 79 --CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILAT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 177 TEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEA 256
Cdd:PRK05563 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYED 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 257 VRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAAnDPSLSEVERTKAA 336
Cdd:PRK05563 237 ALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELE-ILDESTENDELFK 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 517259200 337 EFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDA 390
Cdd:PRK05563 316 ELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEYDT 369
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
21-394 |
1.04e-127 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 385.29 E-value: 1.04e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 21 LARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYktseIDKPTIDLRTPGEHCQ 100
Cdd:PRK14964 3 LALKYRPSSFKDL-VGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC----SNGPTSDPCGTCHNCI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 101 AIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIR 180
Cdd:PRK14964 78 SIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 181 KVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVRGM 260
Cdd:PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 261 LGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAgANPVVVLTDLADFTHLVTRLKYVPDAANDPSLSEVERTKAaefAK 340
Cdd:PRK14964 238 LGCVDKHILEDLVEAILLGDAQSALNVFRELCNT-SNPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKS---LK 313
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 517259200 341 GVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRL 394
Cdd:PRK14964 314 IGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYLSDLPSPQQIIKKI 367
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
18-586 |
8.54e-122 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 372.92 E-value: 8.54e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSeidkPTIDLRTPGE 97
Cdd:PRK14965 3 YLVLARKYRPQTFSD-LTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG----LTAEPCNVCP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANDPSLSEVERTKAAE 337
Cdd:PRK14965 238 AELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 338 FAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAA----------HLPAPEDAARRLAEFSGDNSGPRPA 407
Cdd:PRK14965 318 QAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLApgapvselldRLEALERGAPAPPSAAWGAPTPAAP 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 408 APPSGNGGGNGTRVSYQNSVAARAAEtapsppqpsapvAMLRAVPSSQPETMSVGRIEPKPAEALKPLVPVnsvndivnl 487
Cdd:PRK14965 398 AAPPPAAAPPVPPAAPARPAAARPAP------------APAPPAAAAPPARSADPAAAASAGDRWRAFVAF--------- 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 488 aTEKRDPKLKAMVRtFLRPVRIEAGRLDVSLAPGAP-------TTLLNELAVKLKEWTG---IHWIVSLSRDEGQ--PTL 555
Cdd:PRK14965 457 -VKGKKPALGASLE-QGSPLGVSAGLLEIGFPEGSFelsamqdPDSRAELKALAEQFFGrptRLRITVLAAPPGAapPSL 534
|
570 580 590
....*....|....*....|....*....|....*
gi 517259200 556 VE---AEARTREQHVID-ARQDPDVAAILAHFPGA 586
Cdd:PRK14965 535 AEkkaAEREQRQARLREeAREHPLVQEALRVFGGE 569
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
18-494 |
3.85e-117 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 363.03 E-value: 3.85e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrtpGE 97
Cdd:PRK07994 3 YQVLARKWRPQTFAE-VVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPC------GE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 --HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFA 175
Cdd:PRK07994 76 cdNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 176 TTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAE 255
Cdd:PRK07994 156 TTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTD 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 256 AVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANDPSLSEVERtkA 335
Cdd:PRK07994 236 DVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELR--L 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 336 AEFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIR-LAHAAHLPAPEDAARRlAEFSGDNSGPRPAAPPSGNG 414
Cdd:PRK07994 314 RELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRmLAFHPAAPLPEPEVPP-QSAAPAASAQATAAPTAAVA 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 415 GGNGTRVSyQNSVAARAAETAPSPPQPSAPVAMLRAVPSSQPETMSVGRIEPKPAE-------ALKPLVPVNSVNDIVNL 487
Cdd:PRK07994 393 PPQAPAVP-PPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASrarpvnsALERLASVRPAPSALEK 471
|
....*..
gi 517259200 488 ATEKRDP 494
Cdd:PRK07994 472 APAKKEA 478
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
20-294 |
2.07e-114 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 352.41 E-value: 2.07e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 20 VLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrTPGEHC 99
Cdd:PRK08451 3 ALALKYRPKHFDEL-IGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC----DTCIQC 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 100 QAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEI 179
Cdd:PRK08451 78 QSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 180 RKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVRG 259
Cdd:PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVAD 237
|
250 260 270
....*....|....*....|....*....|....*...
gi 517259200 260 MLGLADRARIVDLFQHIVKGDVAAALG---EFQNqYEA 294
Cdd:PRK08451 238 MLGLLDPSKLEDFFQAILNQDKEKLFEllkELED-YEA 274
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
16-411 |
5.33e-114 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 350.97 E-value: 5.33e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 16 TGYRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrtp 95
Cdd:PRK14969 1 MSYQVLARKWRPKSFSEL-VGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPC------ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 96 G--EHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFI 173
Cdd:PRK14969 74 GvcSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 174 FATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQ 253
Cdd:PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVN 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 254 AEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANDpslSEVERT 333
Cdd:PRK14969 234 ESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIAD---DLPERD 310
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259200 334 KAAEFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIR-LAHAAHLPAPEDAARRLAEFSGDNSGPRPAAPPS 411
Cdd:PRK14969 311 RLLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRmLAFRPSEQDSGAGRAPGAVPGVNRTRAVPTAAPA 389
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
19-591 |
2.32e-111 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 346.03 E-value: 2.32e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 19 RVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEidkPTIDLRTPGEH 98
Cdd:PRK14950 4 QVLYRKWRSQTFAEL-VGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND---PKGRPCGTCEM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 99 CQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTE 178
Cdd:PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 179 IRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVR 258
Cdd:PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 259 GMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGAnpvvvltDLADFTH-LVTRLKYVP--DAANDPSLSEVERTKA 335
Cdd:PRK14950 240 SLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGA-------DLRQFTRdLVEYLRQVMllNSGADRSLLDLTADEK 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 336 AEFAKGVAVTTLSRIWQMlLKGIPETEGSSRTAG----AAEMVLIRlAHAAHLPAPEDAARRLAEFSGDNSGPRPAAPPS 411
Cdd:PRK14950 313 AALQKVSQIANLEALTKW-VKAFSQLDFQLRTTSygqlPLELAVIE-ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPK 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 412 GNGGGNGTRVSYQNSVAARaaETAPSPPQPSAPVAMLRAVPSSQPETMSVGRIEPKPAEALKPLVPVNSVNDIVNLA--- 488
Cdd:PRK14950 391 AAAAANIPPKEPVRETATP--PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEqle 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 489 ---------TEKRDPKLKAMVRTFLRPVRIEAGRLDVSLAPGAPTTLLNELAVK------LKEWTGIHWIVSLSRDEGQP 553
Cdd:PRK14950 469 aiwkqilrdVPPRSPAVQALLSSGVRPVSVEKNTLTLSFKSKFHKDKIEEPENRkiteelLSNFVGKTCAVRCTIEEKSE 548
|
570 580 590
....*....|....*....|....*....|....*...
gi 517259200 554 TLVEAEARTREqhvidARQDPDVAAILAHFpGAKIIDV 591
Cdd:PRK14950 549 EPGDLREQIRE-----ARKDHLVKAAQNIF-DAQIISV 580
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
18-390 |
1.47e-105 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 328.36 E-value: 1.47e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTPGE 97
Cdd:PRK06645 8 YIPFARKYRPSNFAEL-QGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAI---AHGAGVVQA 254
Cdd:PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAsmsAKSDNIISP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 255 EAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANDPSLSEVERTK 334
Cdd:PRK06645 247 QVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDRTK 326
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259200 335 AaeFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDA 390
Cdd:PRK06645 327 S--ILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTSLPLLTDF 380
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
18-358 |
3.92e-105 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 330.77 E-value: 3.92e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSeiDKPTIdlrTP-G 96
Cdd:PRK14948 3 YEPLHHKYRPQRFDEL-VGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNS--DKPTP---EPcG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 97 --EHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIF 174
Cdd:PRK14948 77 kcELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 175 ATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQaIAHGAGVVQA 254
Cdd:PRK14948 157 ATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITP 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 255 EAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTH-LVtrlkyVPDAANDPS----LSE 329
Cdd:PRK14948 236 EAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRdLL-----LAKTAPNRPdlvaVSQ 310
|
330 340
....*....|....*....|....*....
gi 517259200 330 VERTKAAEFAKGVAVTTLSRiWQMLLKGI 358
Cdd:PRK14948 311 QTWDELCKLAKQINLERILQ-WQQHLKGS 338
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
18-525 |
4.60e-105 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 330.91 E-value: 4.60e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYK--------TSeidkpt 89
Cdd:PRK14951 3 YLVLARKYRPRSFSE-MVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQgpdgqggiTA------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 90 idlrTPGEHCQA---IMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEP 166
Cdd:PRK14951 76 ----TPCGVCQAcrdIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 167 PEHVKFIFATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIA 246
Cdd:PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 247 HGAGVVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANDPS 326
Cdd:PRK14951 232 FGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAAT 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 327 LSEvertkAAEFAKGVAV-----TTLsrIWQMLLKGIPETEGSSRTAGAAEMVLIRLahAAHLPApedaarrlaeFSGDN 401
Cdd:PRK14951 312 DPE-----AAEVARLAALmpadeTQL--LYSICLHGRAELGLAPDEYAALTMVLLRL--LAFKPA----------AAAEA 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 402 SGPRPAAPPsgngggngTRVSYQNSVAARAAETAPSPPQPSAPVAMLRAVPSSQPETMSVGRIEPKPAEALKPLVPVNSV 481
Cdd:PRK14951 373 AAPAEKKTP--------ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 517259200 482 NDIVNLATEKRDPKLKAM-VRTFLRPVRIEAGRLDVSLAPGAPTT 525
Cdd:PRK14951 445 VALAPAPPAQAAPETVAIpVRVAPEPAVASAAPAPAAAPAAARLT 489
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
18-474 |
3.62e-104 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 330.86 E-value: 3.62e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTpge 97
Cdd:PRK14960 2 YQVLARKYRPRNFNEL-VGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 hCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK14960 78 -CKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGD---VAAALGEFQNQyeaGANPVVVLTDLADFTHLVTRLKYVPDAAndPSLSEVERTK 334
Cdd:PRK14960 237 KEMLGLIDRTIIYDLILAVHQNQrekVSQLLLQFRYQ---ALDVSLVLDQLISTLHELALLQYLPELG--LKYSEEINAK 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 335 AAEFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLahAAHLP-APEDAArrLAEFSGDNSGPRPAAPPSGN 413
Cdd:PRK14960 312 ILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRL--LAFRPlAPNEIL--VSEPVQQNGQAEVGLNSQAQ 387
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259200 414 GGGNGTRVSYQNSVAARAAEtapsppqpsapvAMLRAVPSSQPETMSVGRIEPKPAEALKP 474
Cdd:PRK14960 388 TAQEITPVSAVQPVEVISQP------------AMVEPEPEPEPEPEPEPEPEPEPEPEPEP 436
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
18-494 |
7.11e-102 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 325.12 E-value: 7.11e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLrtpgE 97
Cdd:PRK08691 3 YQVLARKWRPKTFADL-VGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC----Q 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPD--AANDPslsevERTKA 335
Cdd:PRK08691 238 RQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSalAHDDP-----DSDIL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 336 AEFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRLAEFSGDNSgprpaaPPSGNGG 415
Cdd:PRK08691 313 HRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAPLAAASCDANAVIENTELQS------PSAQTAE 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 416 GNGTRVSYQNSVAARAAETAPSPPQPSAPVAMLRAV-PSSQPETMSVGRIEPKPAEALKPLVPVNSVNDIVNLATEKRDP 494
Cdd:PRK08691 387 KETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAgPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETP 466
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
16-308 |
8.82e-96 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 301.31 E-value: 8.82e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 16 TGYRVLARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKtseidKPTIDlRTP 95
Cdd:PRK06305 2 TSYQVSSRKYRPQTFSE-ILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ-----NPTED-QEP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 96 GEHC---QAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKF 172
Cdd:PRK06305 75 CNQCascKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 173 IFATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVV 252
Cdd:PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259200 253 QAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADF 308
Cdd:PRK06305 235 DPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLF 290
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
18-285 |
2.75e-95 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 301.36 E-value: 2.75e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrTPGE 97
Cdd:PRK14953 3 YIPFARKYRPKFFKEV-IGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC----GKCE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVV 237
|
250 260
....*....|....*....|....*...
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAAL 285
Cdd:PRK14953 238 EEFLGIVSQESVRKFLNLLLESDVDEAI 265
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
18-305 |
2.59e-94 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 305.59 E-value: 2.59e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEidkptiDLRTPGE 97
Cdd:PRK07133 5 YKALYRKYRPKTFDDI-VGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKT------DLLEPCQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEgRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK07133 78 ECIENVN-NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK07133 157 EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNV 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDL 305
Cdd:PRK07133 237 EELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISL 284
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
18-621 |
1.94e-92 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 299.87 E-value: 1.94e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNykTSEIDKPTIDLRTPGE 97
Cdd:PRK12323 3 YQVLARKWRPRDFTTL-VGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN--CTGADGEGGITAQPCG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIME---GRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIF 174
Cdd:PRK12323 80 QCRACTEidaGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 175 ATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQA 254
Cdd:PRK12323 160 ATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 255 EAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDA--ANDPSLSEVER 332
Cdd:PRK12323 240 EAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAvqDDWPEADDIRR 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 333 TKAAEFAKGVAVttlsrIWQMLLKGIPETEGSSRTAGAAEMVLIRLAhaahlpapedaARRLAEFSGDNSGPRPAAPPsg 412
Cdd:PRK12323 320 LAGRFDAQEVQL-----FYQIANLGRSELALAPDEYAGFTMTLLRML-----------AFRPGQSGGGAGPATAAAAP-- 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 413 ngGGNGTRVSYQNSVAARAAETAPSPPQPSAPVAMLRAVPSSQPETMSVGRIEPKPAEALKPLVPVNSVNDIVNLATEKR 492
Cdd:PRK12323 382 --VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 493 DPKLKAMVRtfLRPVRIEAGRLDVSLAPGAPTTLLNELAVKLKEWTGIHWIVSLSRDEGQPTLVEAEARTREQhvidARQ 572
Cdd:PRK12323 460 AAARPAAAG--PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA----TAD 533
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 517259200 573 DPDVAAILAHFPGAKIidVRVRAPEPEEEGEATPPAAAESEEGDILPGD 621
Cdd:PRK12323 534 PDDAFETLAPAPAAAP--APRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
18-474 |
1.48e-91 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 295.15 E-value: 1.48e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFtDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTseidkPTIDLRTPG- 96
Cdd:PRK14971 4 YIVSARKYRPSTF-ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQN-----LTADGEACNe 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 97 -EHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFA 175
Cdd:PRK14971 78 cESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 176 TTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAE 255
Cdd:PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYK 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 256 AVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTH--LVTRlkyvpDAANDPSL--SEVE 331
Cdd:PRK14971 238 SVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRdlLVCK-----DAATLQLLevGESI 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 332 RTKAAEFAKGVAVttlsriwQMLLKGIPETEGSSRTAGAA-------EMVLIRLAH-----AAHLPAPEDAARRLAEFSG 399
Cdd:PRK14971 313 RQRYLEQAQKCPM-------SFLYRALKLCNQCDLNYRASknkrllvELTLIQLAQltqkgDDASGGRGPKQHIKPVFTQ 385
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259200 400 DNSGPRPAAPPSGNGGGNGTRVSYQNSVAARAaeTAPSPPQPSAPVAMLRAVPSSQPETMSvGRIEPKPAEALKP 474
Cdd:PRK14971 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSA--TQPAGTPPTVSVDPPAAVPVNPPSTAP-QAVRPAQFKEEKK 457
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
18-332 |
3.02e-91 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 292.83 E-value: 3.02e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSeidkPTIdlrTP-G 96
Cdd:PRK06647 3 YRGTATKRRPRDFNSL-EGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNG----PTP---MPcG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 97 E--HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIF 174
Cdd:PRK06647 75 EcsSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 175 ATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQA 254
Cdd:PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 255 EAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADF-------THLVTRLKYVPDAANDP-- 325
Cdd:PRK06647 235 EQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFfrellflKHGIKNEAFIGIKAERLpe 314
|
330
....*....|..
gi 517259200 326 -----SLSEVER 332
Cdd:PRK06647 315 klrefDLSQIER 326
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
18-377 |
1.28e-90 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 284.78 E-value: 1.28e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrTPGE 97
Cdd:PRK14961 3 YQILARKWRPQYFRDI-IGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC----RKCI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDaANDPSLSEVERTKAAE 337
Cdd:PRK14961 238 TDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPK-IWNTIFIKNYKNQIQK 316
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 517259200 338 FAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIR 377
Cdd:PRK14961 317 IAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLR 356
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
18-357 |
4.63e-88 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 293.55 E-value: 4.63e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFtDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrtpGE 97
Cdd:PRK14949 3 YQVLARKWRPATF-EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC------GV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 --HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFA 175
Cdd:PRK14949 76 csSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 176 TTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAE 255
Cdd:PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLT 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 256 AVRGMLGLADRARIVDLFQHIVKGDVAAALgefqnQYEA-----GANPVVVLTDLADFTHLVTRLKYVPDAANDPSLSev 330
Cdd:PRK14949 236 QVQTMLGSIDEQHVIALLKALTDADIGVLM-----QTCAqvlafGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYS-- 308
|
330 340
....*....|....*....|....*..
gi 517259200 331 ERTKAaeFAKGVAVTTLSRIWQMLLKG 357
Cdd:PRK14949 309 EQIRA--FAEQLSPEQVQLYYQILLTG 333
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
18-474 |
1.13e-85 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 285.20 E-value: 1.13e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTpge 97
Cdd:PRK07003 3 YQVLARKWRPKDFASL-VGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 hCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK07003 79 -CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAAND--PSLSEVERTKA 335
Cdd:PRK07003 238 SGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDewPEAADLRRFAE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 336 AEFAKGV----AVTTLSR------------IWQMLLKGI---PETEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRLAE 396
Cdd:PRK07003 318 LLSPEQVqlfyQIATVGRgelglapdeyagFTMTLLRMLafePAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVP 397
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259200 397 FSGDNSGPRPAAP-PSGNGGGNGTRVSYQNSVAARAAETAPSPPQPSAPVAMLRAVPSSQPETMSVGRIEPKPAEALKP 474
Cdd:PRK07003 398 AVTAVTGAAGAALaPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS 476
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
20-338 |
5.36e-85 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 277.88 E-value: 5.36e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 20 VLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYktseIDKPTIDLRTPGEHC 99
Cdd:PRK05896 5 TFYRKYRPHNFKQI-IGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC----LNPKDGDCCNSCSVC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 100 QAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEI 179
Cdd:PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 180 RKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVRG 259
Cdd:PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 260 MLGLADRARIVDLFQHIVKGDVAAALgEFQNQYEA-GANPVVVLTDLadFTHLVTRLKY--VPDAANDPSLSEvERTKAA 336
Cdd:PRK05896 240 TFGLVDNNKKINLIELIQKNDIEELR-NLINELESkGINFEAFCRDL--INLLIDLLVYqkTKNINLLKKLSK-EQLKTL 315
|
..
gi 517259200 337 EF 338
Cdd:PRK05896 316 NL 317
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
20-305 |
8.43e-85 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 273.18 E-value: 8.43e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 20 VLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTpgehC 99
Cdd:PRK14962 3 ALYRKYRPKTFSEV-VGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA----C 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 100 QAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEI 179
Cdd:PRK14962 78 RSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 180 RKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVRG 259
Cdd:PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHE 237
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 517259200 260 MLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDL 305
Cdd:PRK14962 238 ALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQA 283
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
18-324 |
2.74e-84 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 274.27 E-value: 2.74e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrTPGE 97
Cdd:PRK14957 3 YQALARKYRPQSFAEV-AGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC----NKCE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAV 257
Cdd:PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQI 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLAD--FTHLVTRLKYVPDAAND 324
Cdd:PRK14957 238 KQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEiwFACCIYSFTQSLDAVND 306
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
21-519 |
1.13e-80 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 263.62 E-value: 1.13e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 21 LARKYRPKDFtDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYkTSEIDKPTIDLrtpgEHCQ 100
Cdd:PRK14963 4 LYQRARPITF-DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGEC----ESCL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 101 AIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIR 180
Cdd:PRK14963 78 AVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 181 KVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEaVRGM 260
Cdd:PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQ-VEEA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 261 LGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLadfthlvtrlkyvpdaandpslseVERTKAAEFAK 340
Cdd:PRK14963 237 LGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGL------------------------LEAFRAALYAE 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 341 gvavttlsriwqMLLKGIPETEGSSRTAGAAEMVL----IRLAHAAHLPAPEDA---ARRLAEFSGDNSGPRPAAPPSGN 413
Cdd:PRK14963 293 ------------LGLGGGPRLEGAEPRLLAAMTALdeqmERFARRSDALSLELAllhALLALGGAPSEGVAAVAPPAPAP 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 414 GGGNGTRVSYQNSVA-ARAAETapsppqpsapvAMLRAVPSSQPETMSVGRIEPKP--AEALKPLVPVNSVNDIVNLATE 490
Cdd:PRK14963 361 ADLTQRLNRLEKEVRsLRSAPT-----------AAATAAGAPLPDFDPRPRGPPAPepARSAEAPPLVAPAAAPAGLALR 429
|
490 500 510
....*....|....*....|....*....|.
gi 517259200 491 KRD--PKLKAMVRTFLRPVRIEAGRLDVSLA 519
Cdd:PRK14963 430 WRDvlAALKMQLRAFLREARPHVEEGYVSLT 460
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
18-285 |
4.74e-78 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 253.28 E-value: 4.74e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTPG- 96
Cdd:PRK14955 3 YQVIARKYRPKKFADI-TAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPc 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 97 ---EHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFI 173
Cdd:PRK14955 82 gecESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 174 FATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIA-----HG 248
Cdd:PRK14955 162 FATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAfsvesEG 241
|
250 260 270
....*....|....*....|....*....|....*..
gi 517259200 249 AGVVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAAL 285
Cdd:PRK14955 242 EGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAML 278
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
21-404 |
1.08e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 258.84 E-value: 1.08e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 21 LARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrTPGEHCQ 100
Cdd:PRK14959 6 LTARYRPQTFAEV-AGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC----NTCEQCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 101 AIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIR 180
Cdd:PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 181 KVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVRGM 260
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 261 LGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANdPSLS--EVERTKAAEF 338
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAAL-ASLDlpEDEARQWLGW 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259200 339 AKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARrlaefSGDNSGP 404
Cdd:PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLPRLMPVESLRP-----SGGGASA 380
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
14-325 |
2.68e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 254.10 E-value: 2.68e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 14 TGTgYRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLR 93
Cdd:PRK14956 2 SGT-HEVLSRKYRPQFFRDV-IHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 94 TpgehCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFI 173
Cdd:PRK14956 80 S----CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 174 FATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQ 253
Cdd:PRK14956 156 LATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLT 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259200 254 AEAVRGMLGLADRARIVDLFQHIVKGDVAAALGE-FQNQYEAGANPVVVLTDLADFTHlvtRLKYVPDAANDP 325
Cdd:PRK14956 236 GVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEiLESLYQEGQDIYKFLWDSIEFTH---TLNLIRDSLADR 305
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
18-285 |
4.49e-76 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 254.48 E-value: 4.49e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 18 YRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSeIDKPTI--DLRTP 95
Cdd:PRK14954 3 YQVIARKYRPSKFADI-TAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRM-IDDPVYlqEVTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 96 GEHCQAIME---GRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKF 172
Cdd:PRK14954 81 CGECESCRDfdaGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 173 IFATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAG-- 250
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGse 240
|
250 260 270
....*....|....*....|....*....|....*...
gi 517259200 251 ---VVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAAL 285
Cdd:PRK14954 241 aekVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKML 278
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
17-378 |
4.30e-74 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 246.18 E-value: 4.30e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 17 GYRVLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLrtpg 96
Cdd:PRK14958 2 AHQVLARKWRPRCFQEV-IGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 97 EHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFAT 176
Cdd:PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 177 TEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEA 256
Cdd:PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIAD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 257 VRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAandpsLSEVERTKAA 336
Cdd:PRK14958 237 VKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEA-----LIENDSEQLR 311
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 517259200 337 EFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRL 378
Cdd:PRK14958 312 QLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRM 353
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
20-288 |
9.88e-74 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 240.93 E-value: 9.88e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 20 VLARKYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNykTSEIDKPTidlrtpgehc 99
Cdd:PRK14970 6 VSARKYRPQTFDDV-VGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN--QPGYDDPN---------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 100 qaimEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEI 179
Cdd:PRK14970 73 ----EDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 180 RKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVRG 259
Cdd:PRK14970 149 HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTE 228
|
250 260
....*....|....*....|....*....
gi 517259200 260 MLGLADRARIVDLFQHIVKGDVAAALGEF 288
Cdd:PRK14970 229 NLNILDYDTYINVTDLILENKIPELLLAF 257
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
21-394 |
4.78e-73 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 245.56 E-value: 4.78e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 21 LARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYktseIDKPTidlRTPGEHCQ 100
Cdd:PRK14952 3 LYRKYRPATFAE-VVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC----AQGPT---ATPCGVCE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 101 AIME-GR----HVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFA 175
Cdd:PRK14952 75 SCVAlAPngpgSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 176 TTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGV-VQA 254
Cdd:PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADThVTY 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 255 EAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAAN----DPSLSEV 330
Cdd:PRK14952 235 QRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAArgvvDAPEDVL 314
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259200 331 ERTKaaEFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAhaahLPAPEDAARRL 394
Cdd:PRK14952 315 ERMR--EQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL----LPSASDAESAL 372
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
21-471 |
3.55e-63 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 223.71 E-value: 3.55e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 21 LARKYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPT------IDLRT 94
Cdd:PRK07764 5 LYRRYRPATFAE-VIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCgecdscVALAP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 95 --PGEhcqaimegrhVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKF 172
Cdd:PRK07764 84 ggPGS----------LDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 173 IFATTEIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAhGAG-- 250
Cdd:PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLA-GAGpe 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 251 VVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLAD-FTHLVTrLKYVPDAAN----DP 325
Cdd:PRK07764 233 GVTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLErLRDLIV-LQAVPDAAErglvDA 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 326 SLSEVERTKAAEFAKGVAvtTLSRIW-------------------------QMLLKGIPETEGSsrTAGAAEMVLIRLAH 380
Cdd:PRK07764 312 PADQLDRMRAQAQRLGPA--ELTRAAdvvndgltemrgatsprlllellcaRMLLPSASDDERG--LLARLERLERRLGV 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 381 AAHLPAPEDAARRLAEfsgdnSGPRPAAPPSGNGGGNGTRVSYQnsVAARAAETAPSPPQPSAPVAMLRAVPSSQPETMS 460
Cdd:PRK07764 388 AGGAGAPAAAAPSAAA-----AAPAAAPAPAAAAPAAAAAPAPA--AAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460
|
490
....*....|.
gi 517259200 461 VGRIEPKPAEA 471
Cdd:PRK07764 461 APSAQPAPAPA 471
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
252-394 |
7.74e-58 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 190.94 E-value: 7.74e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 252 VQAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDAANDPSLSEVE 331
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVAPDAADDLLLPEEE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259200 332 RTKAAEFAKGVAVTTLSRIWQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRL 394
Cdd:pfam12169 81 RARLAELAEKLSPEVLHRLWQMLLKGIEEVPNAPDPRQAAEMVLLRLAYAASLPPPEELLRRL 143
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
37-293 |
3.66e-47 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 167.46 E-value: 3.66e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 37 QEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDlrtpgEHCQAIMEGRHVDVIEM--D 114
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQ-----CHSRLMAAGNHPDLLELnpE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 115 AASHT-GIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRF 193
Cdd:COG0470 76 EKSDQiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 194 DLRRISASDLVglftTIAAKEGIeaEADALAMIARAAEGSARDGLSLLdQAIAHGAGVVQAeavrgMLGLADRARIVDLF 273
Cdd:COG0470 156 RFRPPSEEEAL----AWLREEGV--DEDALEAILRLAGGDPRAAINLL-QALAGRKELLED-----LAALLSRDRALELL 223
|
250 260
....*....|....*....|
gi 517259200 274 QHIVKGDVAAALGEFQNQYE 293
Cdd:COG0470 224 DALLKAEALELLDWLLKWLL 243
|
|
| DUF3646 |
pfam12362 |
DNA polymerase III gamma and tau subunits C terminal; This domain family is found in bacteria, ... |
478-591 |
3.41e-43 |
|
DNA polymerase III gamma and tau subunits C terminal; This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00004. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Pssm-ID: 432506 [Multi-domain] Cd Length: 114 Bit Score: 150.41 E-value: 3.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 478 VNSVNDIVNLATEKRDPKLKAMVRTFLRPVRIEAGRLDVSLAPGAPTTLLNELAVKLKEWTGIHWIVSLSRDEGQPTLVE 557
Cdd:pfam12362 1 LPSFEDLVALAEEKRDIKLKAELERYVRLVRFEPGRLEFALAPGAPRDLAQRLARKLKEWTGRRWTVSLSSEPGEPTLAE 80
|
90 100 110
....*....|....*....|....*....|....
gi 517259200 558 AEARTREQHVIDARQDPDVAAILAHFPGAKIIDV 591
Cdd:pfam12362 81 QEAAAKAARRAAARAHPLVAAVLAAFPGAEIVDV 114
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
36-199 |
3.88e-41 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 146.59 E-value: 3.88e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 36 GQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTpgehCQAIMEGRHVDV--IEM 113
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRS----CRRIESGNHPDLviIEP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 114 DAASHtGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRF 193
Cdd:pfam13177 77 EGQSI-KIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQII 155
|
....*.
gi 517259200 194 DLRRIS 199
Cdd:pfam13177 156 RFKPLS 161
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
42-235 |
1.00e-39 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 143.92 E-value: 1.00e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 42 RTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPtiDLRTPGehCQAIMEGRHVDV--IEMDAASHt 119
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEP--CGECHS--CRLIEAGNHPDLhrLEPEGQSI- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 120 GIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRIS 199
Cdd:TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLS 156
|
170 180 190
....*....|....*....|....*....|....*.
gi 517259200 200 ASDLVglftTIAAKEGIEAEADALAmiARAAEGSAR 235
Cdd:TIGR00678 157 EEALL----QWLIRQGISEEAAELL--LALAGGSPG 186
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
24-320 |
5.18e-23 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 100.45 E-value: 5.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 24 KYRPKDFtDLMVGQEPMVRTLTNAFETGrIAQAYMLTGVRGVGKTTTARILARAL---NYKTSEIDKPTIDLRTPGeHCQ 100
Cdd:PRK12402 8 KYRPALL-EDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELygdPWENNFTEFNVADFFDQG-KKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 101 AIMEGRHVDVIEMDAASHTG-IDDIREII-EQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTE 178
Cdd:PRK12402 85 LVEDPRFAHFLGTDKRIRSSkIDNFKHVLkEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 179 IRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLdQAIAHGAGVVQAEAVR 258
Cdd:PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL-QTAALAAGEITMEAAY 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259200 259 GMLGLADR-ARIVDLFQHIVKGDVAAALGEFQN-QYEAGANPVVVLTDLadftHLVTRLKYVPD 320
Cdd:PRK12402 244 EALGDVGTdEVIESLLDAAEAGDFTDARKTLDDlLIDEGLSGGEVLEEL----LRVARSRYRGD 303
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
21-246 |
7.54e-23 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 101.31 E-value: 7.54e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 21 LARKYRPKDFTDlMVGQEPMV---RTLTNAFETGRIAQAyMLTGVRGVGKTTTARILARALNYKtseidkptidlrtpge 97
Cdd:PRK13342 2 LAERMRPKTLDE-VVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATDAP---------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 hcqaimegrhvdVIEMDAAShTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLST--QAFngLLKTLEEppEHVKFIFA 175
Cdd:PRK13342 64 ------------FEALSAVT-SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKaqQDA--LLPHVED--GTITLIGA 126
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259200 176 TTE-----IRKvPItvLSRCQRFDLRRISASDLVGLFTTIAAKEG---IEAEADALAMIARAAEGSARDGLSLLDQAIA 246
Cdd:PRK13342 127 TTEnpsfeVNP-AL--LSRAQVFELKPLSEEDIEQLLKRALEDKErglVELDDEALDALARLANGDARRALNLLELAAL 202
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
41-285 |
9.93e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 99.61 E-value: 9.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 41 VRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRtpgeHCQAIMEGRHVDV--IEMDAASh 118
Cdd:PRK08058 15 VKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT----NCKRIDSGNHPDVhlVAPDGQS- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 119 TGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRI 198
Cdd:PRK08058 90 IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 199 SASDLVGLFTtiaaKEGIeaeADALAMIARAAEGSARDGLSLL-DQAIAhgagvvQAeavrgmlgladRARIVDLFQHIV 277
Cdd:PRK08058 170 PPESLIQRLQ----EEGI---SESLATLLAGLTNSVEEALALSeDDWFA------QA-----------RALVIKLYEALH 225
|
....*...
gi 517259200 278 KGDVAAAL 285
Cdd:PRK08058 226 EKDLQSFV 233
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
26-288 |
1.14e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 100.10 E-value: 1.14e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 26 RPKDFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILAR-ALNYKTSEID---KPTIDLRTPGEH--C 99
Cdd:PRK07471 14 HPRETTAL-FGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARfLLATPPPGGDgavPPPTSLAIDPDHpvA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 100 QAIMEGRHVD--VIEMDAASHTG-------IDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHV 170
Cdd:PRK07471 93 RRIAAGAHGGllTLERSWNEKGKrlrtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 171 KFIFATTEIRKVPITVLSRCQRFDLRRISASDLVGLfttiAAKEGIEAEADALAMIARAAEGSARDGLSLLDQaiahGAG 250
Cdd:PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDA----LAAAGPDLPDDPRAALAALAEGSVGRALRLAGG----DGL 244
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 517259200 251 VVQAEAVRGMLGL--ADRARIVDLFQHIVKGDVAAALGEF 288
Cdd:PRK07471 245 ALYRRLTALLDTLprLDRRALHALADAAAGRDRAARFALF 284
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
198-262 |
1.40e-22 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 91.41 E-value: 1.40e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 517259200 198 ISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHGAGVVQAEAVRGMLG 262
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
24-284 |
3.03e-22 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 98.02 E-value: 3.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 24 KYRPKDFTDlMVGQEPMVRTLTNAFETGRIAQaYMLTGVRGVGKTTTARILARALnYktseidkptidlrtpGEHCQAIM 103
Cdd:PRK00440 10 KYRPRTLDE-IVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALAREL-Y---------------GEDWRENF 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 104 egrhvdvIEMDAASHTGIDDIREIIEQ-VRYRPV-SARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRK 181
Cdd:PRK00440 72 -------LELNASDERGIDVIRNKIKEfARTAPVgGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 182 V--PITvlSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLdQAIAHGAGVVQAEAVRG 259
Cdd:PRK00440 145 IidPIQ--SRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYK 221
|
250 260
....*....|....*....|....*
gi 517259200 260 MLGLADRARIVDLFQHIVKGDVAAA 284
Cdd:PRK00440 222 ITGTARPEEIREMIELALNGDFTEA 246
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
34-203 |
2.38e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 92.02 E-value: 2.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 34 MVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTttarILARALNYKTseIDKPTIDlrtpgehcqaimegRHVDVIE- 112
Cdd:PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKS----LLAKEIALKI--LGKSQQR--------------EYVDIIEf 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 113 --MDAAShTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC 190
Cdd:PRK05564 66 kpINKKS-IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144
|
170
....*....|...
gi 517259200 191 QRFDLRRISASDL 203
Cdd:PRK05564 145 QIYKLNRLSKEEI 157
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
32-232 |
3.20e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 93.05 E-value: 3.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 32 DLMVGQEPMVRTLTNA---------FETGRIAQAYMLTGVRGVGKTTTARILARALNyktseidkpTIDLRTPG----EH 98
Cdd:PRK07940 5 DDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ---------CTDPDEPGcgecRA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 99 CQAIMEGRHVDV--IEMDAAShTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFAT 176
Cdd:PRK07940 76 CRTVLAGTHPDVrvVAPEGLS-IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 517259200 177 TEIRKVPITVLSRCQRFDLRRISASDLVGLFTtiaAKEGIEAEADALAmiARAAEG 232
Cdd:PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV---RRDGVDPETARRA--ARASQG 205
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
29-233 |
5.85e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 91.12 E-value: 5.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 29 DFTDLmVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALnyKTSEIDKPTIDLRtpgehcqaIMEGRHV 108
Cdd:PRK07399 2 LFANL-IGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL--LSQGSPSKNIRRR--------LEEGNHP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 109 DV-------------IEMDAASHTG----------IDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEE 165
Cdd:PRK07399 71 DLlwveptyqhqgklITASEAEEAGlkrkappqirLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 166 pPEHVKFIFATTEIRKVPITVLSRCQRFDLRRISASDLvglfTTIAAKEGIEAEADAL--AMIARAAeGS 233
Cdd:PRK07399 151 -PGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQL----EQVLKRLGDEEILNINfpELLALAQ-GS 214
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
24-274 |
3.47e-19 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 90.75 E-value: 3.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 24 KYRPKDFTDLmVGQEPMVRTLT---NAFETGRIAQAYMLTGVRGVGKTTTARILARALNYktseidkptidlrtpgehcq 100
Cdd:PRK04195 7 KYRPKTLSDV-VGNEKAKEQLRewiESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW-------------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 101 aimegrhvDVIEMDAAshtgidDIR--EIIEQV-----RYRPVS-ARYKVYIIDEVHMLSTQAFNG----LLKTLEEPpe 168
Cdd:PRK04195 66 --------EVIELNAS------DQRtaDVIERVageaaTSGSLFgARRKLILLDEVDGIHGNEDRGgaraILELIKKA-- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 169 hvkfifatteirKVPI-------------TVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSAR 235
Cdd:PRK04195 130 ------------KQPIiltandpydpslrELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLR 197
|
250 260 270
....*....|....*....|....*....|....*....
gi 517259200 236 DGLSLLdQAIAHGAGVVQAEAVRgmlGLADRARIVDLFQ 274
Cdd:PRK04195 198 SAINDL-QAIAEGYGKLTLEDVK---TLGRRDREESIFD 232
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
24-305 |
1.36e-17 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 84.01 E-value: 1.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 24 KYRPKDFTDLmVGQEPMVRTLTNAFETGRIAQaYMLTGVRGVGKTTTARILARAL---NYKTSeidkptidlrtpgehcq 100
Cdd:PLN03025 6 KYRPTKLDDI-VGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHELlgpNYKEA----------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 101 aimegrhvdVIEMDAASHTGIDDIREIIEQVRYRPVS---ARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:PLN03025 67 ---------VLELNASDDRGIDVVRNKIKMFAQKKVTlppGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EIRKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLdQAIAHGAGVVQAEAV 257
Cdd:PLN03025 138 TSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL-QATHSGFGFVNQENV 216
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 517259200 258 RGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDL 305
Cdd:PLN03025 217 FKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTL 264
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
8-262 |
3.23e-17 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 84.34 E-value: 3.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 8 SKDAASTGTGYRVLARKYRPKDFTDlMVGQEPMV---RTLTNAFETGRIAQayM-LTGVRGVGKTTTARILARALNYKts 83
Cdd:COG2256 2 DDAAAEASAANAPLAERMRPRTLDE-VVGQEHLLgpgKPLRRAIEAGRLSS--MiLWGPPGTGKTTLARLIANATDAE-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 84 eidkptidlrtpgehcqaimegrhvdVIEMDAAShTGIDDIREIIEQVRYRPVSARYKVYIIDEVHmlstqAFN-----G 158
Cdd:COG2256 77 --------------------------FVALSAVT-SGVKDIREVIEEARERRAYGRRTILFVDEIH-----RFNkaqqdA 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 159 LLKTLEEppEHVKFIFATTE-----IRKvPItvLSRCQRFDLRRISASDLVGLFTTIAAKEG-------IEAEADALAMI 226
Cdd:COG2256 125 LLPHVED--GTITLIGATTEnpsfeVNS-AL--LSRCRVFVLKPLSEEDLEQLLERALADDErglggykLELDDEALEAL 199
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 517259200 227 ARAAEGSARDGLSLLDQAIA----HGAGVVQAEAVRGMLG 262
Cdd:COG2256 200 ARLADGDARRALNALELAVLsappDGVIEITLELVEEALQ 239
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
42-202 |
1.77e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 81.07 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 42 RTLTNAFEtgRIAQAYMLTGVRGVGKTTTARILARALnyktsEIDKPTIDLRTPGE--HCQAIMEGRHVDVIEMDAAS-- 117
Cdd:PRK08699 11 RQIAEHWE--RRPNAWLFAGKKGIGKTAFARFAAQAL-----LCETPAPGHKPCGEcmSCHLFGQGSHPDFYEITPLSde 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 118 --------HTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSR 189
Cdd:PRK08699 84 pengrkllQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR 163
|
170
....*....|...
gi 517259200 190 CQRFDLRRISASD 202
Cdd:PRK08699 164 CRKMVLPAPSHEE 176
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
51-316 |
1.82e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 77.82 E-value: 1.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 51 GRIAQAYMLTGVRGVGKTTTARILARALNyktseIDKPTiDLRTPGE--HCQAIMEGRHVD--VIEMDAASHT-GIDDIR 125
Cdd:PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALL-----CEAPQ-GGGACGSckGCQLLRAGSHPDnfVLEPEEADKTiKVDQVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 126 EIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFdlrrisasdlvg 205
Cdd:PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ------------ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 206 LFTtiaakegIEAEADALAMIARA-AEGSARDGLSLLDQAiahGAGVVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAa 284
Cdd:PRK05707 161 ACP-------LPSNEESLQWLQQAlPESDERERIELLTLA---GGSPLRALQLHEQGVREQRARVLDGVKKLLKQQQSA- 229
|
250 260 270
....*....|....*....|....*....|...
gi 517259200 285 lgeFQNQYEAGANPVVVLTD-LADFTHLVTRLK 316
Cdd:PRK05707 230 ---SQLAESWLKVPLLLLFDwFCDWAHDILRYQ 259
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
31-248 |
7.00e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 76.23 E-value: 7.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 31 TDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTA-----RILARALNYKTSE----IDKPTIDLR--TPGEHC 99
Cdd:PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAfhlanHILSHPDPAEAPEtladPDPASPVWRqiAQGAHP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 100 QAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEI 179
Cdd:PRK09112 102 NLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSS 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259200 180 RKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEadALAMIARAAEGSARDGLSLldqaIAHG 248
Cdd:PRK09112 182 GRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGE--ITEALLQRSKGSVRKALLL----LNYG 244
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
38-191 |
1.54e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 68.99 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 38 EPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEIDKPTidlrtpGE--HCQAIMEGRHVDVIEMDA 115
Cdd:PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPC------GQchSCHLFQAGNHPDFHILEP 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259200 116 ASHT--GIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQ 191
Cdd:PRK06871 82 IDNKdiGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
123-199 |
1.57e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 65.51 E-value: 1.57e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517259200 123 DIREIIEQVRYRP-VSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRIS 199
Cdd:PRK07132 73 EFLSAINKLYFSSfVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
118-216 |
2.55e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 64.82 E-value: 2.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 118 HTgIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRC-----QR 192
Cdd:PRK05917 75 HS-IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSlsihiPM 153
|
90 100
....*....|....*....|....
gi 517259200 193 FDLRRISASDLVGLFTTIAAKEGI 216
Cdd:PRK05917 154 EEKTLVSKEDIAYLIGYAQGKESV 177
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
106-272 |
2.81e-11 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 66.79 E-value: 2.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 106 RHvDVIEMDAASHTGIDDIREIIEQ-VRYRPV-SARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVP 183
Cdd:PRK04132 596 RH-NFLELNASDERGINVIREKVKEfARTKPIgGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 184 ITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLdQAIAHGAGVVQAEAVrgmLGL 263
Cdd:PRK04132 675 EPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDDKITDENV---FLV 750
|
....*....
gi 517259200 264 ADRARIVDL 272
Cdd:PRK04132 751 ASRARPEDI 759
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
99-190 |
5.84e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 64.32 E-value: 5.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 99 CQAIMEGRHVD--VIEMDAASHT-GIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFA 175
Cdd:PRK07993 65 CQLMQAGTHPDyyTLTPEKGKSSlGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLA 144
|
90
....*....|....*
gi 517259200 176 TTEIRKVPITVLSRC 190
Cdd:PRK07993 145 CREPARLLATLRSRC 159
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
35-192 |
6.59e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 61.01 E-value: 6.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 35 VGQEPMVRTLTNAFEtGRIAQAYMLTGVRGVGKTTTARILARALNYktseidkptidlrtpgehcqaimegRHVDVIEMD 114
Cdd:cd00009 1 VGQEEAIEALREALE-LPPPKNLLLYGPPGTGKTTLARAIANELFR-------------------------PGAPFLYLN 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 115 AASHTGIDDIREIIEQVRYR-----PVSARYKVYIIDEVHMLSTQAFNGLLKTLEE------PPEHVKFIFATT--EIRK 181
Cdd:cd00009 55 ASDLLEGLVVAELFGHFLVRllfelAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGD 134
|
170
....*....|.
gi 517259200 182 VPITVLSRCQR 192
Cdd:cd00009 135 LDRALYDRLDI 145
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
47-254 |
1.67e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 59.59 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 47 AFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEidkPTIDLRTPgehcQAIMEGRHVDV-----IEMDAA----S 117
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPD---PAAAQRTR----QLIAAGTHPDLqlvsfIPNRTGdklrT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 118 HTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRR 197
Cdd:PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKL 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517259200 198 ISASDLVGL-----FTTIAAKEGIEAeadALAMIARAAEGSARDGLSL-------LDQAIAHGAGVVQA 254
Cdd:PRK08769 172 PPAHEALAWllaqgVSERAAQEALDA---ARGHPGLAAQWLREDGLALrravaqdLEQIASGRAGAVDV 237
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
24-224 |
2.14e-09 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 59.23 E-value: 2.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 24 KYRPKDFTDLMVGQEpmVRTLTNAF-ETGRIAQAYMLTGVRGVGKTTTARILARALNYktseidkptidlrtpgehcqai 102
Cdd:PHA02544 14 KYRPSTIDECILPAA--DKETFKSIvKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA---------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 103 megrhvDVIEMDAAShTGIDDIR-EIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTL-EEPPEHVKFIFATTEIR 180
Cdd:PHA02544 70 ------EVLFVNGSD-CRIDFVRnRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKN 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 517259200 181 KVPITVLSRCQRFDLRRISASDLVGLF-------TTIAAKEGIEAEADALA 224
Cdd:PHA02544 143 GIIEPLRSRCRVIDFGVPTKEEQIEMMkqmivrcKGILEAEGVEVDMKVLA 193
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
100-321 |
2.46e-09 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 59.11 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 100 QAIMEGRHVDVIEMDAAShtgiDDIREIIEQVRYRPVSARYKVYIIDEVHMLS--TQAFNGLLKTLEEPPEHVKFIFATT 177
Cdd:COG1466 27 AALAEDDGFNRTRLDGAE----TDWAELLDEAQTLSLFGERRLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 178 EI---RKVPITVLSRCQRFDLRRISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSardgLSLLDQAI------AHG 248
Cdd:COG1466 103 KLdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAGLRIDPDAAQLLAERVGGD----LLALAQELeklalyAGD 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 517259200 249 AGVVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLTDLADFTHLVTRLKYVPDA 321
Cdd:COG1466 179 GGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLLAEGEEPVLILAALARQFRLLLQVKALLAQ 251
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
55-198 |
3.09e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 3.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 55 QAYMLTGVRGVGKTTTARILARALNYKTSEIdkptIDLRTPGEHCQAiMEGRHVDVIEMDAASHTGIDDIREIIEQVRYR 134
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGV----IYIDGEDILEEV-LDQLLLIIVGGKKASGSGELRLRLALALARKL 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517259200 135 pvsaRYKVYIIDEVHMLSTQAFNGLL-------KTLEEPPEHVKFIFATTEIRKVPITVLSR---CQRFDLRRI 198
Cdd:smart00382 78 ----KPDVLILDEITSLLDAEQEALLllleelrLLLLLKSEKNLTVILTTNDEKDLGPALLRrrfDRRIVLLLI 147
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
21-245 |
5.52e-09 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 59.30 E-value: 5.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 21 LARKYRPKDFTDLmVGQEPMV---RTLTNAFETGRIAQAyMLTGVRGVGKTTTARILARalnyktseidkptidlrtpge 97
Cdd:PRK13341 18 LADRLRPRTLEEF-VGQDHILgegRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIAN--------------------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 98 HCQAimegrhvDVIEMDAASHtGIDDIREIIEQVRYRpvSARY---KVYIIDEVHMLSTQAFNGLLKTLEEPPehVKFIF 174
Cdd:PRK13341 75 HTRA-------HFSSLNAVLA-GVKDLRAEVDRAKER--LERHgkrTILFIDEVHRFNKAQQDALLPWVENGT--ITLIG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 175 ATTE--IRKVPITVLSRCQRFDLRRISASDLVG-LFTTIAAKEG------IEAEADALAMIARAAEGSARDGLSLLDQAI 245
Cdd:PRK13341 143 ATTEnpYFEVNKALVSRSRLFRLKSLSDEDLHQlLKRALQDKERgygdrkVDLEPEAEKHLVDVANGDARSLLNALELAV 222
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
39-195 |
4.14e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 55.20 E-value: 4.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 39 PMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTSEiDKPTidlrtpG--EHCQAIMEGRHVD--VI--E 112
Cdd:PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SEAC------GfcHSCELMQSGNHPDlhVIkpE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 113 MDAASHTgIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQR 192
Cdd:PRK06090 83 KEGKSIT-VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161
|
...
gi 517259200 193 FDL 195
Cdd:PRK06090 162 WVV 164
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
57-193 |
5.38e-08 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 51.83 E-value: 5.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 57 YMLTGVRGVGKTTTARILARALNYKTSEIDKPTIDLRTPGEhcqaimegrhvdviemdaashtGIDDIREIIEQVRyrpv 136
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGE----------------------SEKRLRELFEAAK---- 54
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517259200 137 SARYKVYIIDEVHML-----------STQAFNGLLKTLEEP---PEHVKFIFATTEIRKVPITVLSRCQRF 193
Cdd:pfam00004 55 KLAPCVIFIDEIDALagsrgsggdseSRRVVNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRFDRI 125
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
121-249 |
1.59e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 53.61 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 121 IDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRISA 200
Cdd:PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 517259200 201 SDLVGLFTT--IAAKEGIEAEADA--LAMIArAAEGSARDGLSLLDQAIAHGA 249
Cdd:PRK06964 194 EAAAAWLAAqgVADADALLAEAGGapLAALA-LASDENRPLRDWTLGQLAAGA 245
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
54-182 |
4.74e-07 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 49.26 E-value: 4.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 54 AQAYMLTGVRGVGKTTTARILARALNYKTSE---IDKPtiDLRTPGEHCQAIMEGrhvdvIEMDAASHTGIDDIREIIEQ 130
Cdd:pfam13401 5 AGILVLTGESGTGKTTLLRRLLEQLPEVRDSvvfVDLP--SGTSPKDLLRALLRA-----LGLPLSGRLSKEELLAALQQ 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 517259200 131 VRYRpvSARYKVYIIDEVHMLSTQAFNgLLKTLEEPPEH-VKFIFA-TTEIRKV 182
Cdd:pfam13401 78 LLLA--LAVAVVLIIDEAQHLSLEALE-ELRDLLNLSSKlLQLILVgTPELREL 128
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
97-193 |
1.11e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 50.60 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 97 EHCQAIMEGRHVDVIEM-DAASHTGIDDIREIIEQVRYRPVSAR-YKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIF 174
Cdd:PRK05818 44 ESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINKLNRPSVESNgKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIF 123
|
90
....*....|....*....
gi 517259200 175 ATTEIRKVPITVLSRCQRF 193
Cdd:PRK05818 124 TTRNENNILNTILSRCVQY 142
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
121-196 |
5.46e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 47.72 E-value: 5.46e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517259200 121 IDDIREIIEQVrYrpVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLR 196
Cdd:PRK08485 39 IEDAKEVIAEA-Y--IAESEEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
210-261 |
6.96e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 41.30 E-value: 6.96e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 517259200 210 IAAKEGIEAEADALAMIARAAEGSARDGLSLLDQAIAHG-AGVVQAEAVRGML 261
Cdd:cd18133 13 IAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGdDGKISLDRVYQAV 65
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
198-257 |
2.01e-04 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 39.82 E-value: 2.01e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 198 ISASDLVGLFTTIAAKEGIEAEADALAMIARAAEGSARDGLSLLdQAIAHGAGVVQAEAV 257
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDV 59
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
58-159 |
6.78e-04 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 41.70 E-value: 6.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 58 MLTGVRGVGKTTTARILARAL--NYKTSEIDKPTIdlrTPGEHCQAIMEGRHVDVIEMDAAShtGIDDIREIIEQVRyrp 135
Cdd:COG3267 47 VLTGEVGTGKTTLLRRLLERLpdDVKVAYIPNPQL---SPAELLRAIADELGLEPKGASKAD--LLRQLQEFLLELA--- 118
|
90 100
....*....|....*....|....*
gi 517259200 136 vSARYKVY-IIDEVHMLSTQAFNGL 159
Cdd:COG3267 119 -AAGRRVVlIIDEAQNLPPETLEEL 142
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
107-196 |
7.61e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 41.75 E-value: 7.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 107 HVDVIEMDAASHT---GIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVP 183
Cdd:PRK06581 54 HFIARETSATSNAkniSIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASII 133
|
90
....*....|...
gi 517259200 184 ITVLSRCQRFDLR 196
Cdd:PRK06581 134 STIRSRCFKINVR 146
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
49-231 |
1.40e-03 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 41.16 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 49 ETGRIAQAYMLTGvrGVGKTTTARILARALNYKTSEIDKPTIDLRTpgehCQAIMEGRHVDVIEMDAASHT-GIDDIREI 127
Cdd:PRK07276 19 EQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRS----CRLIEQGEFSDVTVIEPQGQViKTDTIREL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 128 IEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRISASdLVGLf 207
Cdd:PRK07276 93 VKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPKNEAY-LIQL- 170
|
170 180
....*....|....*....|....*
gi 517259200 208 ttiAAKEGI-EAEADALAMIARAAE 231
Cdd:PRK07276 171 ---LEQKGLlKTQAELLAKLAQSTS 192
|
|
| SK |
cd00464 |
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ... |
59-81 |
1.86e-03 |
|
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Pssm-ID: 238260 [Multi-domain] Cd Length: 154 Bit Score: 39.08 E-value: 1.86e-03
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
159-352 |
2.88e-03 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 39.94 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 159 LLKTLEEPPEHVKFIF----------ATTEIRKVPITVLSRCQRfdlrrISASDLVGLFTTIAAKEGIEAEADALAMIAR 228
Cdd:TIGR01128 67 LEEYLANPPPDTLLLIeapkldkrkkLTKWLKALKNAEIVECKT-----PKEQELPRWIQARLKKLGLRIDPDAVQLLAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 229 AAEGSardgLSLLDQAIA-----HGAGVVQAEAVRGMLGLADRARIVDLFQHIVKGDVAAALGEFQNQYEAGANPVVVLT 303
Cdd:TIGR01128 142 LVEGN----LLAIAQELEklalyAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLA 217
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 517259200 304 DLADFTHLVTRLKyvpdaandpSLSEVERTKAAEFAKGvavttlsRIWQ 352
Cdd:TIGR01128 218 LLQRQLRLLLQLK---------RLAQQGGPLAQLASKL-------GIWP 250
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
56-205 |
4.05e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 37.95 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 56 AYMLTGVRGVGKTTTARILARALNYKTSEIdkpTIDLRTPgehcqaimegrhvdviemDAASHTGIDDIREIIEQVRYRP 135
Cdd:pfam13173 4 ILVITGPRQVGKTTLLLQLIKELLPPENIL---YINLDDP------------------RLLKLADFELLELFLELLYPGK 62
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 136 vsaryKVYIIDEVHMlstqafngllktLEEPPEHVKFIFATTEIRKVpitVLSRCQRFDLRRISASDLVG 205
Cdd:pfam13173 63 -----TYLFLDEIQR------------VPDWELALKRLYDDGPNGRV---ILTGSSALLLSKEIAESLAG 112
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
58-236 |
4.69e-03 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 39.89 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 58 MLTGVRGVGKTTTARILARALNyktseidkptidlrtpgehcqaimegrhVDVIEMDAAS-------HTGIDdIREIIEQ 130
Cdd:COG0464 195 LLYGPPGTGKTLLARALAGELG----------------------------LPLIEVDLSDlvskyvgETEKN-LREVFDK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 131 VR-YRPVsarykVYIIDEVHML-----------STQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQR-FDLRR 197
Cdd:COG0464 246 ARgLAPC-----VLFIDEADALagkrgevgdgvGRRVVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEiIFFPL 320
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 517259200 198 ISASDLVGLFTTIAAKEGIEAEADaLAMIARAAEG-SARD 236
Cdd:COG0464 321 PDAEERLEIFRIHLRKRPLDEDVD-LEELAEATEGlSGAD 359
|
|
| AAA_18 |
pfam13238 |
AAA domain; |
58-143 |
4.80e-03 |
|
AAA domain;
Pssm-ID: 433052 [Multi-domain] Cd Length: 128 Bit Score: 37.41 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 58 MLTGVRGVGKTTTARILARALNYKTSEID-KPTIDLRTPGEH----CQAIMEGRHVDVIE--MDAASHTGIDDIreIIEQ 130
Cdd:pfam13238 2 LITGTPGVGKTTLAKELSKRLGFGDNVRDlALENGLVLGDDPetreSKRLDEDKLDRLLDllEENAALEEGGNL--IIDG 79
|
90
....*....|...
gi 517259200 131 VRYRPVSARYKVY 143
Cdd:pfam13238 80 HLAELEPERAKDL 92
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
56-151 |
6.71e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 39.16 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 56 AYMLTGVRGVGKTTTARILARALNyktseiDKPTIDLrtpgehcqaimegrhvdviEMDAASHTGIDDIREIIEqvRYRP 135
Cdd:COG1373 22 AVVITGPRQVGKTTLLKQLAKELE------NILYINL-------------------DDPRLRALAEEDPDDLLE--ALKE 74
|
90
....*....|....*.
gi 517259200 136 VSARYKVYIIDEVHML 151
Cdd:COG1373 75 LYPGKTYLFLDEIQRV 90
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
41-247 |
7.91e-03 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 38.39 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 41 VRTLTNAFETGRIAQAYML-TGVRGVGKTTTARILARAlnyktseiDKPTI-----DLRTPGEHCQAIMEgrhvdVIEMD 114
Cdd:COG2842 36 VRRFAEALDEARALPGIGVvYGESGVGKTTAAREYANR--------NPNVIyvtasPSWTSKELLEELAE-----ELGIP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517259200 115 AASHTGIDDIREIIEQVRY--RPVsarykvyIIDEVHMLSTQAFngllktleeppEHVKFIFATTEIrkvPI-------- 184
Cdd:COG2842 103 APPGTIADLRDRILERLAGtgRLL-------IIDEADHLKPKAL-----------EELRDIHDETGV---GVvligmerl 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 517259200 185 -TVLSRCQRFD--------LRRISASDlvgLFTTIAAKEGIEaEADALAMIARAAEGSARdglsLLDQAIAH 247
Cdd:COG2842 162 pAKLKRYEQLYsrigfwveFKPLSLED---VRALAEAWGELT-DPDLLELLHRITRGNLR----RLDRTLRL 225
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
35-79 |
8.48e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.48 E-value: 8.48e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 517259200 35 VGQEPMVRTLTNAFETGRI--AQAYMLTGVRGVGKTTTARILARALN 79
Cdd:pfam13191 3 VGREEELEQLLDALDRVRSgrPPSVLLTGEAGTGKTTLLRELLRALE 49
|
|
| |
