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Conserved domains on  [gi|517056574|ref|WP_018245392|]
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DUF1236 domain-containing protein [Rhizobium leguminosarum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1236 super family cl06059
Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial ...
 69-131 8.51e-11

Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.


The actual alignment was detected with superfamily member pfam06823:

Pssm-ID: 429137  Cd Length: 64  Bit Score: 53.78  E-value: 8.51e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517056574   69 YVQQAPAPTERVVVKEKVvvGQPLPETVVVTPVPDD---PKYAYAIVNDQRVIVEPSSRKVVQVIQ 131
Cdd:pfam06823   1 YVREQPVPPVTVEGEVSV--GAVLPETVELYPVPDDigiPGYRYVVVNDRTVIVDPRTRRVVQIIE 64
 
Name Accession Description Interval E-value
DUF1236 pfam06823
Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial ...
 69-131 8.51e-11

Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.


Pssm-ID: 429137  Cd Length: 64  Bit Score: 53.78  E-value: 8.51e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517056574   69 YVQQAPAPTERVVVKEKVvvGQPLPETVVVTPVPDD---PKYAYAIVNDQRVIVEPSSRKVVQVIQ 131
Cdd:pfam06823   1 YVREQPVPPVTVEGEVSV--GAVLPETVELYPVPDDigiPGYRYVVVNDRTVIVDPRTRRVVQIIE 64
 
Name Accession Description Interval E-value
DUF1236 pfam06823
Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial ...
 69-131 8.51e-11

Protein of unknown function (DUF1236); This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.


Pssm-ID: 429137  Cd Length: 64  Bit Score: 53.78  E-value: 8.51e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517056574   69 YVQQAPAPTERVVVKEKVvvGQPLPETVVVTPVPDD---PKYAYAIVNDQRVIVEPSSRKVVQVIQ 131
Cdd:pfam06823   1 YVREQPVPPVTVEGEVSV--GAVLPETVELYPVPDDigiPGYRYVVVNDRTVIVDPRTRRVVQIIE 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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