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Conserved domains on  [gi|517055817|ref|WP_018244635|]
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cytochrome-c oxidase, cbb3-type subunit III [Rhizobium leguminosarum]

Protein Classification

cytochrome c family protein( domain architecture ID 229496)

cytochrome c family protein is a ubiquitous heme protein in mitochondria and bacteria, possessing a CXXCH motif with covalently attached heme; in both prokaryotes and eukaryotes it functions to transfer electrons from reduced substrates to physiological partners, thereby driving the pathway leading to oxidative phosphorylation and ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DHOR super family cl21467
Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It ...
 14-291 3.14e-90

Di-haem oxidoreductase, putative peroxidase; DHOR is a family of di-haem oxidoredictases. It carries the two characteriztic Cys-X-Y-Cys-His haem-binding motifs. The C-terminal high-potential site functions as an electron transfer centre, and the N-terminal low-potential site corresponds to the peroxidatic centre. Its probable function is as a peroxidase.


The actual alignment was detected with superfamily member TIGR00782:

Pssm-ID: 473872 [Multi-domain]  Cd Length: 285  Bit Score: 269.84  E-value: 3.14e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817   14 TTGHIWNGIKELDTPVPRGVLLFLIITHLFAALWWILYPTWPLGSTYTRGLIGTSQKQAVERKIIEADASRAPWIEKIET 93
Cdd:TIGR00782  11 TTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWPLVSGATKGLLGWSSRSQVEEEIKKFNEKNAAKWAKLAQ 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817   94 SSFDEIRADEKLMEKVASSGHQLFGDNCAACHGRDGKGGRDFPDLTDDDWLWGGGPEKIVQTMTVGV-NTTHSQSRVSQM 172
Cdd:TIGR00782  91 TPLEDIAKDPELKQYARNAGAAIFRTWCAQCHGSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrDPDDGDTYVGEM 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  173 PAFGtdEMLNRKQVSDVAAYVYSLSNTSTEsvDASQIAAGRQVFMASCVACHGEDAKGKQDVGAPNLTDGRWIYGGGIER 252
Cdd:TIGR00782 171 PAFG--PLLEEADIKDVASYVMSLSSGKPK--DEALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTDDVWLYGGDLKT 246

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 517055817  253 IVQSIHGGRQGHMPTWDERLSPAEIKILALYVNKLGGGQ 291
Cdd:TIGR00782 247 ITTTITNGRGGVMPAWGPRLSEAQIKALAAYVHSLGGGQ 285
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 14-291 3.14e-90

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 269.84  E-value: 3.14e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817   14 TTGHIWNGIKELDTPVPRGVLLFLIITHLFAALWWILYPTWPLGSTYTRGLIGTSQKQAVERKIIEADASRAPWIEKIET 93
Cdd:TIGR00782  11 TTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWPLVSGATKGLLGWSSRSQVEEEIKKFNEKNAAKWAKLAQ 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817   94 SSFDEIRADEKLMEKVASSGHQLFGDNCAACHGRDGKGGRDFPDLTDDDWLWGGGPEKIVQTMTVGV-NTTHSQSRVSQM 172
Cdd:TIGR00782  91 TPLEDIAKDPELKQYARNAGAAIFRTWCAQCHGSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrDPDDGDTYVGEM 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  173 PAFGtdEMLNRKQVSDVAAYVYSLSNTSTEsvDASQIAAGRQVFMASCVACHGEDAKGKQDVGAPNLTDGRWIYGGGIER 252
Cdd:TIGR00782 171 PAFG--PLLEEADIKDVASYVMSLSSGKPK--DEALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTDDVWLYGGDLKT 246

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 517055817  253 IVQSIHGGRQGHMPTWDERLSPAEIKILALYVNKLGGGQ 291
Cdd:TIGR00782 247 ITTTITNGRGGVMPAWGPRLSEAQIKALAAYVHSLGGGQ 285
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
189-290 3.77e-20

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 85.39  E-value: 3.77e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 189 VAAYVYSLSNTSTESVDASQIAAGRQVFMASCVACHGEDAKGKQDVgAPNLTDGRwIYGGGIERIVQSI-HGGRQGHMPT 267
Cdd:COG2010   69 LLALLLAAAAADAPAADAEALARGKALYEQNCAACHGADGKGGLGA-APNLTDDA-LYGGDPEALVETIlNGRPGGAMPA 146

                         90       100
                 ....*....|....*....|...
gi 517055817 268 WDERLSPAEIKILALYVNKLGGG 290
Cdd:COG2010  147 FGGQLSDEEIAALAAYLRSLSGN 169
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 11-57 9.01e-17

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 72.57  E-value: 9.01e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 517055817   11 GRKTTGHIWNGIKELDTPVPRGVLLFLIITHLFAALWWILYPTWPLG 57
Cdd:pfam14715   1 GDETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLG 47
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 169-287 6.58e-06

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 46.74  E-value: 6.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 169 VSQMPAFGTDemLNRKQVSDVAayvYSLSNTSTESVDASQIAAGRQVFMASCVACHGEDAKGKQDVgAPNLTDGRWIYGG 248
Cdd:PRK14486 180 VAYMQSLGKA--IPRRAAGGAE---VDLELPNPFATDVAAIAKGKALYDANCAACHGDEAQGQEGV-ALNDIDDGDLPDA 253

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 517055817 249 GIERIvqsIHGGRQGH-MPTWDERLSPAEIKILALYVNKL 287
Cdd:PRK14486 254 AYFGM---IKGGSDAKgMPGFGGDLSDDDIWAIVAYIRSQ 290
 
Name Accession Description Interval E-value
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 14-291 3.14e-90

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 269.84  E-value: 3.14e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817   14 TTGHIWNGIKELDTPVPRGVLLFLIITHLFAALWWILYPTWPLGSTYTRGLIGTSQKQAVERKIIEADASRAPWIEKIET 93
Cdd:TIGR00782  11 TTGHEWDGIEEYDNPLPRWWLWTFYATIVWGFGYLVAYPAWPLVSGATKGLLGWSSRSQVEEEIKKFNEKNAAKWAKLAQ 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817   94 SSFDEIRADEKLMEKVASSGHQLFGDNCAACHGRDGKGGRDFPDLTDDDWLWGGGPEKIVQTMTVGV-NTTHSQSRVSQM 172
Cdd:TIGR00782  91 TPLEDIAKDPELKQYARNAGAAIFRTWCAQCHGSGAGGAKGFPNLLDNDWLWGGTLEGIHTTIKHGIrDPDDGDTYVGEM 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  173 PAFGtdEMLNRKQVSDVAAYVYSLSNTSTEsvDASQIAAGRQVFMASCVACHGEDAKGKQDVGAPNLTDGRWIYGGGIER 252
Cdd:TIGR00782 171 PAFG--PLLEEADIKDVASYVMSLSSGKPK--DEALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTDDVWLYGGDLKT 246

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 517055817  253 IVQSIHGGRQGHMPTWDERLSPAEIKILALYVNKLGGGQ 291
Cdd:TIGR00782 247 ITTTITNGRGGVMPAWGPRLSEAQIKALAAYVHSLGGGQ 285
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
189-290 3.77e-20

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 85.39  E-value: 3.77e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 189 VAAYVYSLSNTSTESVDASQIAAGRQVFMASCVACHGEDAKGKQDVgAPNLTDGRwIYGGGIERIVQSI-HGGRQGHMPT 267
Cdd:COG2010   69 LLALLLAAAAADAPAADAEALARGKALYEQNCAACHGADGKGGLGA-APNLTDDA-LYGGDPEALVETIlNGRPGGAMPA 146

                         90       100
                 ....*....|....*....|...
gi 517055817 268 WDERLSPAEIKILALYVNKLGGG 290
Cdd:COG2010  147 FGGQLSDEEIAALAAYLRSLSGN 169
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
102-197 4.16e-19

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 82.30  E-value: 4.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 102 DEKLMEKVASSGHQLFGDNCAACHGRDGKGGR-DFPDLTDDDwLWGGGPEKIVQTMTVGVNTThsqsrvsQMPAFGtdEM 180
Cdd:COG2010   81 APAADAEALARGKALYEQNCAACHGADGKGGLgAAPNLTDDA-LYGGDPEALVETILNGRPGG-------AMPAFG--GQ 150

                         90
                 ....*....|....*..
gi 517055817 181 LNRKQVSDVAAYVYSLS 197
Cdd:COG2010  151 LSDEEIAALAAYLRSLS 167
FixP_N pfam14715
N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the ...
 11-57 9.01e-17

N-terminal domain of cytochrome oxidase-cbb3, FixP; This is the N-terminal domain of FixP, the cytochrome oxidase type-cbb3. the exact function is not known.


Pssm-ID: 464278  Cd Length: 48  Bit Score: 72.57  E-value: 9.01e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 517055817   11 GRKTTGHIWNGIKELDTPVPRGVLLFLIITHLFAALWWILYPTWPLG 57
Cdd:pfam14715   1 GDETTGHEWDGIRELNNPLPRWWLWLFYATIVFAVVYLVLYPGLGLG 47
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
203-292 1.62e-14

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 67.83  E-value: 1.62e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 203 SVDASQIAAGRQvFMASCVACHGEDAKGKQDVGAPNLTDGRWIYgggierIVQSIHGGRQGH-----MPTWDERLSPAEI 277
Cdd:COG2863    9 PAAAGDAARGKA-YAAACAACHGADGEGNPGGGAPRLAGQHAEY------LVAQLKAFRSGArkngvMPAIAKGLSDEDI 81

                         90
                 ....*....|....*
gi 517055817 278 KILALYVNKLGGGQP 292
Cdd:COG2863   82 KALAAYIASLKAPPG 96
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 109-292 3.57e-13

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 67.19  E-value: 3.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 109 VASSGHQLF--GDNCAACHGRDGKGGR----DFPDLTDDdwlwgggpEKIVQTMTVGVNTTHSQSRVSQMPAFGTDEMLn 182
Cdd:COG3258   11 AARRGEELFtnGLSCASCHLDAGTKPWgvaaAYPAYRAR--------NGKVVTLEDRINGCFTRSMNGKPLPLDSAEMK- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 183 rkqvsDVAAYVYSLSNTSTESVD--------------ASQIAAGRQVFMASCVACHGEDAKGKQDVGA----PNLTDGR- 243
Cdd:COG3258   82 -----ALVAYLRWLSRGLPVGVKldgrglpklpkpaaSADVERGKALYAERCASCHGADGEGQGRADGqygfPPLWGGDs 156

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 517055817 244 WIYGGGIERIVQSIHGGRQGHMPTWD-ERLSPAEIKILALYVNKLGGGQP 292
Cdd:COG3258  157 YNDGAGMARLGTLADFIKGRNMPLGKpGSLSDDEAWDVAAYVRSLPRPVP 206
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
208-284 6.34e-11

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 57.03  E-value: 6.34e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055817  208 QIAAGRQVFMASCVACHGEDAKGkqdvgaPNLTDGRWIYgggiERIVQSIHGGRQGhMPTWDERLSPAEIKILALYV 284
Cdd:pfam13442   2 AAAAGEALYAANCASCHGTGGAG------PSLAGRALPP----EALVDIIRNGKGA-MPAFGGDLSDEELEALAAYL 67
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 113-211 8.54e-10

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 57.56  E-value: 8.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 113 GHQLFGDNCAACHGRDGKGGRD------FPDLT-DDDWLWGGGpekivqtMTvGVNTTHSQSRVSQMPaFGTDEMLNRKQ 185
Cdd:COG3258  120 GKALYAERCASCHGADGEGQGRadgqygFPPLWgGDSYNDGAG-------MA-RLGTLADFIKGRNMP-LGKPGSLSDDE 190

                         90       100
                 ....*....|....*....|....*.
gi 517055817 186 VSDVAAYVYSLSNTSTESVDASQIAA 211
Cdd:COG3258  191 AWDVAAYVRSLPRPVPRKTDVPAVRK 216
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
110-193 1.96e-09

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 52.79  E-value: 1.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  110 ASSGHQLFGDNCAACHGRDGKGgrdfPDLTDDDWlwggGPEKIVQTMTVGVNTthsqsrvsqMPAFGTDemLNRKQVSDV 189
Cdd:pfam13442   3 AAAGEALYAANCASCHGTGGAG----PSLAGRAL----PPEALVDIIRNGKGA---------MPAFGGD--LSDEELEAL 63


                  ....
gi 517055817  190 AAYV 193
Cdd:pfam13442  64 AAYL 67
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 210-287 4.13e-09

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 52.54  E-value: 4.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  210 AAGRQVFMASCVACHGEDAKGKQDvGAPNL-----------TDGRWIYGGGIERIVQSIHGGRQGHMPTWDERLSPAEIK 278
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGA-GGPDLaglaarypgdaLGAIRENKHAIGGGGVDRAGGPPGTGMPAFDGLTDEEIA 79


                  ....*....
gi 517055817  279 ILALYVNKL 287
Cdd:pfam00034  80 DLVAYLLSL 88
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 113-197 2.33e-08

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 50.61  E-value: 2.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  113 GHQLFGDNCAACHGRDGKG-GRDFPDLTDDDWLWGGGPEKIV-----QTMTVGVNTTHSQSRvSQMPAFGtdeMLNRKQV 186
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGaGAGGPDLAGLAARYPGDALGAIrenkhAIGGGGVDRAGGPPG-TGMPAFD---GLTDEEI 78

                          90
                  ....*....|.
gi 517055817  187 SDVAAYVYSLS 197
Cdd:pfam00034  79 ADLVAYLLSLS 89
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
117-198 8.65e-07

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 46.26  E-value: 8.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 117 FGDNCAACHGRDGKGGRD--FPDLTdddwlwGGGPEKIVQTMTvgvNTTHSQSRVSQMPAFGtdEMLNRKQVSDVAAYVY 194
Cdd:COG2863   21 YAAACAACHGADGEGNPGggAPRLA------GQHAEYLVAQLK---AFRSGARKNGVMPAIA--KGLSDEDIKALAAYIA 89


                 ....
gi 517055817 195 SLSN 198
Cdd:COG2863   90 SLKA 93
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 120-196 1.38e-06

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 45.27  E-value: 1.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  120 NCAACHGRDGKG---GRDFPDLT-------DDDWLWGggpeKIVQtmtvgvntthSQSRV--SQMPAFGTDEMLNRKQVS 187
Cdd:TIGR04485   4 NCLACHQIPGSEvfpGNIGPSLTgygarypDEAYLRA----KIAD----------AKAVNpcTVMPRFGKNGILTEQEIE 69


                  ....*....
gi 517055817  188 DVAAYVYSL 196
Cdd:TIGR04485  70 DVVAYLLTL 78
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
206-287 1.86e-06

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 45.28  E-value: 1.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 206 ASQIAAGRQVFMAS-CVACHGEDAKGkqdVGaPNLTDGRWIYGG---GIERIVQSIHGGRQGH-----MPTwDERLSPAE 276
Cdd:COG4654    1 AADAAAGKALAKKSgCLACHAVDKKL---VG-PSYKDVAKKYKGkadAVAKLAKKIKKGGSGVwgdvpMPP-HPQLSDAE 75

                         90
                 ....*....|.
gi 517055817 277 IKILALYVNKL 287
Cdd:COG4654   76 AKALVKWILSL 86
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 169-287 6.58e-06

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 46.74  E-value: 6.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 169 VSQMPAFGTDemLNRKQVSDVAayvYSLSNTSTESVDASQIAAGRQVFMASCVACHGEDAKGKQDVgAPNLTDGRWIYGG 248
Cdd:PRK14486 180 VAYMQSLGKA--IPRRAAGGAE---VDLELPNPFATDVAAIAKGKALYDANCAACHGDEAQGQEGV-ALNDIDDGDLPDA 253

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 517055817 249 GIERIvqsIHGGRQGH-MPTWDERLSPAEIKILALYVNKL 287
Cdd:PRK14486 254 AYFGM---IKGGSDAKgMPGFGGDLSDDDIWAIVAYIRSQ 290
PRK13697 PRK13697
cytochrome c6; Provisional
 206-284 1.07e-05

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 43.62  E-value: 1.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 206 ASQIAAGRQVFMASCVACHgedAKGKQDVGA-PNLTDGRW-IYG-GGIERIVQSIHGGRqGHMPTWDERLSPAEIKILAL 282
Cdd:PRK13697  25 AADAANGEQVFSANCASCH---AGGKNLVNAgKTLKKADLeKYGmYSLEAITAQVTNGK-NAMPAFKDRLSPDQIEDVAA 100


                 ..
gi 517055817 283 YV 284
Cdd:PRK13697 101 YV 102
petJ CHL00183
cytochrome c553; Provisional
 199-284 2.59e-04

cytochrome c553; Provisional


Pssm-ID: 177085  Cd Length: 108  Bit Score: 39.76  E-value: 2.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 199 TSTESVDASQIAAGRQVFMASCVACHGedakGKQDVGAPNLTDGRWIYGG----GIERIVQSIHGGRQGhMPTWDERLSP 274
Cdd:CHL00183  16 SFSQPAFAADLDNGEQIFSANCAACHA----GGNNVIMPEKTLKKDALEAnsmnSIEAITYQVTNGKNA-MPAFGGRLSD 90

                         90
                 ....*....|
gi 517055817 275 AEIKILALYV 284
Cdd:CHL00183  91 EDIEDVANYV 100
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 109-198 2.66e-04

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 41.73  E-value: 2.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 109 VASSGHQLFGDNCAACHGRDGKGGRDfPDLTDDDwlWGGGPEKIVQTMtvgvntTHSQSRVSQMPAFGTDemLNRKQVSD 188
Cdd:PRK14486 214 AIAKGKALYDANCAACHGDEAQGQEG-VALNDID--DGDLPDAAYFGM------IKGGSDAKGMPGFGGD--LSDDDIWA 282

                         90
                 ....*....|
gi 517055817 189 VAAYVYSLSN 198
Cdd:PRK14486 283 IVAYIRSQKA 292
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
209-243 2.71e-04

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 39.48  E-value: 2.71e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 517055817 209 IAAGRQVFMASCVACH--GEDAKGKqdVGaPNLTD--GR 243
Cdd:COG3474    3 AAAGEKLFNRKCAACHsvDGGAGNR--VG-PNLNGvvGR 38
petJ CHL00183
cytochrome c553; Provisional
 113-195 5.21e-04

cytochrome c553; Provisional


Pssm-ID: 177085  Cd Length: 108  Bit Score: 38.99  E-value: 5.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817 113 GHQLFGDNCAACHGrdgkGGRDFPDltdddwlwgggPEKIVQTMTVGVNTTHSQSRV--------SQMPAFGTdeMLNRK 184
Cdd:CHL00183  29 GEQIFSANCAACHA----GGNNVIM-----------PEKTLKKDALEANSMNSIEAItyqvtngkNAMPAFGG--RLSDE 91

                         90
                 ....*....|.
gi 517055817 185 QVSDVAAYVYS 195
Cdd:CHL00183  92 DIEDVANYVLS 102
c550_PedF TIGR04494
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote ...
 113-193 3.37e-03

cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.


Pssm-ID: 275287  Cd Length: 133  Bit Score: 36.99  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055817  113 GHQLFGDNCAACHGRDGKGGRDFPDL----TDDDwlwggGPEKIVQTMTVGVntthSQSRVSQMPAFgtDEMLNRKQVSD 188
Cdd:TIGR04494  54 GASAYNQNCARCHGLEAISGGIAPDLrkldAGED-----GDEWFVERVRHGA----VRDGRVYMPPF--EGILSQEALWA 122


                  ....*
gi 517055817  189 VAAYV 193
Cdd:TIGR04494 123 IRTYL 127
CxxCH_TIGR02603 TIGR02603
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
 210-241 8.58e-03

putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).


Pssm-ID: 274224  Cd Length: 133  Bit Score: 35.80  E-value: 8.58e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 517055817  210 AAGRQVFMASCVACHGEDAKGkQDVGaPNLTD 241
Cdd:TIGR02603   4 ARGKAVFAKVCYLCHRIGGQG-VDFG-PNLTT 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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