|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
20-336 |
3.97e-107 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 315.89 E-value: 3.97e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 20 LIRISLKEAGVAIALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIM 99
Cdd:COG1172 11 LLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 100 INPAFSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTITGLPQPFVDFGNLIFW 179
Cdd:COG1172 91 VALGLPIL----LAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 180 GIfPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVA 259
Cdd:COG1172 167 GI-PVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNA 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055627 260 GIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSYRGRLMRK 336
Cdd:COG1172 246 GSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
61-327 |
2.02e-84 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 255.80 E-value: 2.02e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 61 IAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMINPAFSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSF 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIP----LAILAALAVGALIGLLNGLLVAYLRIPPF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 141 IVTLGMLNVASGLARVVSDNSTITGLPQPFVDFGNLIFWGIFPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVR 220
Cdd:cd06579 77 IVTLGTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAAR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 221 LSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLST 300
Cdd:cd06579 157 LSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNN 236
|
250 260
....*....|....*....|....*..
gi 517055627 301 GLQLLGADDNIKPIVIGAVIVLAVILD 327
Cdd:cd06579 237 GLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
32-331 |
6.39e-71 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 223.44 E-value: 6.39e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 32 IALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMinpafSPWQAIV 111
Cdd:PRK09512 23 IALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIV-----GIEVNAL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 112 LACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTI-TGLPQ---PFVDFGNLIFWGIFPSIFL 187
Cdd:PRK09512 98 VAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDnadLFGWFGIGRPLGIPTPVWI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 188 IAIVVvLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNA 267
Cdd:PRK09512 178 MAIVF-LAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDA 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055627 268 IAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSYRG 331
Cdd:PRK09512 257 IAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-329 |
5.91e-56 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 186.51 E-value: 5.91e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 25 LKEAGVAIALILILAFFS-ATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMINPA 103
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQiLTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 104 FSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSFIVTL-GMLnVASGLARVVSDNSTITGLPQPFVDFGN------- 175
Cdd:NF040906 82 MPWW----LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLaGML-VFRGLTLVVLGGQSIGPFPDGFQKISSgflpdlf 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 176 ------------------LIFWGIF-------------------------------------------PSIFLIAIVVVL 194
Cdd:NF040906 157 ggtglhlltlllgvlaaaALVWSQLrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLIL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 195 IGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNAIAAVIIG 274
Cdd:NF040906 237 VYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIG 316
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 517055627 275 GTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSY 329
Cdd:NF040906 317 GASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
53-324 |
1.14e-31 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 119.67 E-value: 1.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 53 NFLKIFVQIAINTVLAAGMTFVI-LVGGIDLSVGSLLALCTVIGATIMINPAFSPWQAIVLACLAsmgtGAILGAVNGWI 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILV----GAAVGLLIGIL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 132 CEKWKLPSFIVTLGMLNVASGLARVVSDNST----ITGLPQPFVDFGNLIFWGIFPSIFLIAIVVVLIGWFVLRYTVFGR 207
Cdd:pfam02653 77 TLRLKINEVIITLLLNLAALGLALFLVTGILggegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 208 FVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPV-AGIGYELNAIAAVIIggtslsGGKGSIV 286
Cdd:pfam02653 157 ALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVL------GGAGSPI 230
|
250 260 270
....*....|....*....|....*....|....*....
gi 517055627 287 GTLVGACILQVLST-GLQLLGADDNIKPIVIGAVIVLAV 324
Cdd:pfam02653 231 GVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
20-336 |
3.97e-107 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 315.89 E-value: 3.97e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 20 LIRISLKEAGVAIALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIM 99
Cdd:COG1172 11 LLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 100 INPAFSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTITGLPQPFVDFGNLIFW 179
Cdd:COG1172 91 VALGLPIL----LAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 180 GIfPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVA 259
Cdd:COG1172 167 GI-PVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNA 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055627 260 GIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSYRGRLMRK 336
Cdd:COG1172 246 GSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
61-327 |
2.02e-84 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 255.80 E-value: 2.02e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 61 IAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMINPAFSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSF 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIP----LAILAALAVGALIGLLNGLLVAYLRIPPF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 141 IVTLGMLNVASGLARVVSDNSTITGLPQPFVDFGNLIFWGIFPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVR 220
Cdd:cd06579 77 IVTLGTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAAR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 221 LSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLST 300
Cdd:cd06579 157 LSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNN 236
|
250 260
....*....|....*....|....*..
gi 517055627 301 GLQLLGADDNIKPIVIGAVIVLAVILD 327
Cdd:cd06579 237 GLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
25-332 |
9.06e-81 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 249.08 E-value: 9.06e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 25 LKEAGVAIALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMINPAF 104
Cdd:COG4158 27 LQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 105 SPwqaivLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTITGLPQPFVDFGNLIFWGIfPS 184
Cdd:COG4158 107 GL-----LGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLGI-PW 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 185 IFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRL-NVGSPVAGIGY 263
Cdd:COG4158 181 LVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLyAANGLQLGQGY 260
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 517055627 264 ELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSYRGR 332
Cdd:COG4158 261 ELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQR 329
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
6-329 |
3.29e-79 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 246.95 E-value: 3.29e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 6 EKQTEAKEVSVWDKLIRISLKEAGVAIALILILAFFS-ATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSV 84
Cdd:COG4214 3 TTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQiLTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 85 GSLLALCTVIGATIMINPAFSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTIT 164
Cdd:COG4214 83 GSVSGFVGAVAAVLMVNWGLPWW----LAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 165 GLPQPFVDFGN---------------------LIFWGI------------------------------------------ 181
Cdd:COG4214 159 PFDPTFQAIGNgflpdilgtlswvlgavavaaYVALQLrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrg 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 182 FPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGI 261
Cdd:COG4214 239 IPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGT 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055627 262 GYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSY 329
Cdd:COG4214 319 GFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVL 386
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
32-331 |
6.39e-71 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 223.44 E-value: 6.39e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 32 IALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMinpafSPWQAIV 111
Cdd:PRK09512 23 IALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIV-----GIEVNAL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 112 LACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTI-TGLPQ---PFVDFGNLIFWGIFPSIFL 187
Cdd:PRK09512 98 VAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDnadLFGWFGIGRPLGIPTPVWI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 188 IAIVVvLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNA 267
Cdd:PRK09512 178 MAIVF-LAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDA 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 517055627 268 IAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSYRG 331
Cdd:PRK09512 257 IAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
16-332 |
2.49e-58 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 190.75 E-value: 2.49e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 16 VWDKLirislkeaGVAIALILILAFFSATAP-YFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVI 94
Cdd:PRK09699 8 FWDKY--------GTFFILAIIVAIFGSLSPeYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 95 GATIMInPAFSPWQAIVLACLAsmgTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTITGLPQPFVDFG 174
Cdd:PRK09699 80 TAKLML-AGVDPFLAALIGGVL---VGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 175 NLIFWGIfPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNV 254
Cdd:PRK09699 156 AASVIGI-PVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGA 234
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 517055627 255 GSPVAGIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSYRGR 332
Cdd:PRK09699 235 AEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 312
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-329 |
5.91e-56 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 186.51 E-value: 5.91e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 25 LKEAGVAIALILILAFFS-ATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMINPA 103
Cdd:NF040906 2 LRQYGMLIALVAIVVLFQiLTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 104 FSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSFIVTL-GMLnVASGLARVVSDNSTITGLPQPFVDFGN------- 175
Cdd:NF040906 82 MPWW----LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLaGML-VFRGLTLVVLGGQSIGPFPDGFQKISSgflpdlf 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 176 ------------------LIFWGIF-------------------------------------------PSIFLIAIVVVL 194
Cdd:NF040906 157 ggtglhlltlllgvlaaaALVWSQLrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglPNVLIILGVLIL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 195 IGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNAIAAVIIG 274
Cdd:NF040906 237 VYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIG 316
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 517055627 275 GTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSY 329
Cdd:NF040906 317 GASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVY 371
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
1-332 |
3.13e-51 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 172.94 E-value: 3.13e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 1 MSANIEKQTEAKEVSVWDKL-IRISLKEAGVAIALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGG 79
Cdd:PRK11285 2 SSVSTSGSGAAAAAPPKSRFsLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 80 IDLSVGSLLALCTVIGATImINPAFSPWqaivLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSD 159
Cdd:PRK11285 82 FDLSVASVVAFAGVVTAVV-INATESLW----LGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 160 NSTITGLPQPFVDFGNLIFWGIFPSIFLIAIVVVLIGwFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGL 239
Cdd:PRK11285 157 GKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFG-FLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 240 TAGIAAMVYLLRLNVGSPVAGIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAV 319
Cdd:PRK11285 236 VSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLI 315
|
330
....*....|...
gi 517055627 320 IVLAVILDSYRGR 332
Cdd:PRK11285 316 LLAAVLFDRYKQR 328
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
34-300 |
4.28e-44 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 153.95 E-value: 4.28e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 34 LILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIMINPAFSPWQAIVLA 113
Cdd:PRK11618 15 FVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPLLAFPLV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 114 CLasmgTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNS-TITglpQPFVDFGNLIFW-----GIFPSIFL 187
Cdd:PRK11618 95 LV----MGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESiPIN---HPFYDTLSSLAWklpggGRLSAMAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 188 IAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNA 267
Cdd:PRK11618 168 IMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDA 247
|
250 260 270
....*....|....*....|....*....|...
gi 517055627 268 IAAVIIGGTSLSGGKGSIVGTLVGACILQVLST 300
Cdd:PRK11618 248 IAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQT 280
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
25-328 |
2.15e-43 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 152.53 E-value: 2.15e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 25 LKEAGVAIALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIGATIM----- 99
Cdd:PRK09478 13 LKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLqsmdn 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 100 INPAFS--PWQAIVLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDN---STITGLPQPFVDF- 173
Cdd:PRK09478 93 ANKVFPelATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFvgaSPISGFDSGFSTFa 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 174 -GNLIFWGI-FPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLR 251
Cdd:PRK09478 173 qGFVALGSFrLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGR 252
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055627 252 LNVGSPVAGIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDS 328
Cdd:PRK09478 253 IGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDS 329
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
26-322 |
6.06e-36 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 132.93 E-value: 6.06e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 26 KEAGVAIALILILAFFSATAPYFATPENFLKIFVQIAINTVLAAGMTFVILVGGIDLSVGSLLALCTVIgATIMINPAFS 105
Cdd:PRK15432 9 RELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVL-VGMLLNAGYS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 106 pwqaIVLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMLNVASGLARVVSDNSTITGLPQPFVDFGNLIFWGIFPsI 185
Cdd:PRK15432 88 ----LPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISP-I 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 186 FLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYEL 265
Cdd:PRK15432 163 GWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEM 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 517055627 266 NAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLSTGLQLLGA----DDNIKPIVIGAVIVL 322
Cdd:PRK15432 243 KAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIpawwNDFIAGLVLLGVLVF 303
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
53-324 |
1.14e-31 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 119.67 E-value: 1.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 53 NFLKIFVQIAINTVLAAGMTFVI-LVGGIDLSVGSLLALCTVIGATIMINPAFSPWQAIVLACLAsmgtGAILGAVNGWI 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILV----GAAVGLLIGIL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 132 CEKWKLPSFIVTLGMLNVASGLARVVSDNST----ITGLPQPFVDFGNLIFWGIFPSIFLIAIVVVLIGWFVLRYTVFGR 207
Cdd:pfam02653 77 TLRLKINEVIITLLLNLAALGLALFLVTGILggegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 208 FVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPV-AGIGYELNAIAAVIIggtslsGGKGSIV 286
Cdd:pfam02653 157 ALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVL------GGAGSPI 230
|
250 260 270
....*....|....*....|....*....|....*....
gi 517055627 287 GTLVGACILQVLST-GLQLLGADDNIKPIVIGAVIVLAV 324
Cdd:pfam02653 231 GVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
66-325 |
2.64e-25 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 103.76 E-value: 2.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 66 VLAAGMTFVILVGGIDLSVGSLLALCTvigatIMINPAFSPWQAIVLACLASMGTGAILGAVNGWICEKWKLPSFIVTLG 145
Cdd:PRK15038 47 IVALPLTMVIVSGGIDISFGSTIGLCA-----IALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLG 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 146 MLNVASGLARVVSDNSTITG------LPQPFVDFGNLIFWGIfPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAV 219
Cdd:PRK15038 122 TLYLFGGSALLLSGMAGATGyegiggFPMAFTDFANLDVLGL-PVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 220 RLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNAIAAVIIGGTSLSGGKGSIVGTLVGACILQVLS 299
Cdd:PRK15038 201 LYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQ 280
|
250 260
....*....|....*....|....*.
gi 517055627 300 TGLQLLGADDNIKPIVIGAVIVLAVI 325
Cdd:PRK15038 281 QGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
63-324 |
1.62e-24 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 100.43 E-value: 1.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 63 INTVLAAGMTFVILVGGI-DLSVGSLLALCTVIGATIMINPaFSPWQAIVLACLAsmgtGAILGAVNGWICEKWKLPSFI 141
Cdd:cd06574 3 IYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAG-YNPWLALIAAILA----GAAAGLVTGFLHTRLKINGLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 142 VTLGMLNVASGLARVVSDNSTITGLPQPFVDFGNLIFWGIF----PSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEE 217
Cdd:cd06574 78 AGILIMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGtlsiPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 218 AVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSPVAGIGYELNAIAAVIIGGTSLSG--GKGSIVGTLVGACIL 295
Cdd:cd06574 158 MARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILY 237
|
250 260
....*....|....*....|....*....
gi 517055627 296 QVLSTGLQLLGADDNIKPIVIGAVIVLAV 324
Cdd:cd06574 238 RIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
54-326 |
1.85e-18 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 83.98 E-value: 1.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 54 FLKIFVQIAINTVLAAGMTFVILVGG-IDLSVGSLLALCTVIGATIMINPAFSPWQAIVLACLASMGTGAILGavngwic 132
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLGYTGlLSLGHAAFFGIGAYAAALLTTHLGLPFWLALLLAGLVAALLGLLIG------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 133 ekwkLPSF--------IVTLG----MLNVASGLARVVSDNSTITGLPQPFV---DFGNLIFWGIFpsIFLIAIVVVLIGW 197
Cdd:COG4177 77 ----LPALrlrgdylaIATLAfaeiVRLLALNLESLTGGADGLSGIPRPTLfglDLGSPLAFYYL--VLALLVLVLLLLR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 198 FVLRyTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSP-VAGIGYELNAIAAVIIGGT 276
Cdd:COG4177 151 RLVR-SRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPeSFSFLLSIEILLMVVLGGL 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 517055627 277 slsggkGSIVGTLVGACILQVLSTGLQLLGaddNIKPIVIGAVIVLAVIL 326
Cdd:COG4177 230 ------GSLLGPVLGAVLLVLLPELLRSLP---EYRLLIFGLLLILVVLF 270
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
61-326 |
1.08e-17 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 81.34 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 61 IAINTVLAAGMTFVILVGG-IDLSVGSLLALCTVIGATIMINPAFSPWQAIVLACLASMGTGAILGavngwicekwkLPS 139
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLG-----------LPA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 140 F--------IVTLG----MLNVASGLARVVSDNSTITGLPQPFvdFGNLIFWGIFPSIFLIAIVVVLIGWFV--LRYTVF 205
Cdd:cd06581 70 LrlrgvyfaIATLAfaeiVRLLALNWSSLTGGSNGLSGIPPPL--LGGLLLSSPLAFYYLVLAVLLLVLLLLrrLVRSPF 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 206 GRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVGSP-VAGIGYELNAIAAVIIGGTslsggkGS 284
Cdd:cd06581 148 GRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPeSFGFALSIELLLMVVLGGL------GS 221
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 517055627 285 IVGTLVGACILQVLSTGLQLLGadDNIKPIVIGAVIVLAVIL 326
Cdd:cd06581 222 LLGPVLGAALLVLLPELLRSLG--PGLRLLVFGLLLILVVLF 261
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
57-326 |
3.26e-17 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 80.49 E-value: 3.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 57 IFVQIAINTV--------LAAGMTFVILVGG-IDLSVGSLLALCTVIGATIMINPAFSPWQAIVLACLASMGTGAILG-A 126
Cdd:COG0559 3 LFLQQLLNGLslgsiyalIALGLTLIFGVMGvINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLErL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 127 VNGWICEKWKLPSFIVTLGMLNVASGLARVV--SDNSTITGLPQPFVDFGNLIFWGIFPSIFLIAIVVVLIGWFVLRYTV 204
Cdd:COG0559 83 VIRPLRGAPPLALLLATIGLSLVLQGLVLLIfgADPRSFPALLSGSVELGGVSIPAYRLFIIVVALVLLAALWLFLRRTR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 205 FGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVgSPVAGIGYELNAIAAVIIGGTslsggkGS 284
Cdd:COG0559 163 LGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SPTMGFLLGLKAFAAVVLGGL------GS 235
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 517055627 285 IVGTLVGACILQVLSTGLQLLgADDNIKPIVIGAVIVLAVIL 326
Cdd:COG0559 236 IPGAVVGGLLLGLAESLGAAY-LPSGYKDVVAFVLLILVLLV 276
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
93-326 |
2.25e-16 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 77.09 E-value: 2.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 93 VIGATIMINPAFSPWQAIVLACLASMGTGAILGAVNGWICEKWKLPSFIVTLGMlnvasglarvvsdnstitglpqpfvd 172
Cdd:cd06580 33 FAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLML-------------------------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 173 fgNLIFWGIFPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLLRL 252
Cdd:cd06580 87 --NYIALGLTSYLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGV 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 517055627 253 nVGSPVAGI--GYELNAIAAVIIGGtslsggkGSIVGTLVGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVIL 326
Cdd:cd06580 165 -QGRFTEGMsaGYGFIAIAVALLGR-------WNPLGILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLF 232
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
67-326 |
6.60e-16 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 76.32 E-value: 6.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 67 LAAGMTFVILVGG-IDLSVGSLLALCTVIGATIMINPAFSPWQAIVLACLASMGTGAILGAVNGWICEKWKLPSFIVTLG 145
Cdd:cd06582 11 IALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLITFG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 146 MLNVASGLARVV---SDNSTITGLPQPFVDFGNLIFWGIFPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLS 222
Cdd:cd06582 91 GLLILLQGLLLIfggDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 223 GHEPKRYKIAVFTISGLTAGIAAMVYLLRLNVgSPVAGIGYELNAIAAVIIGGTslsggkGSIVGTLVGACILQVLSTGL 302
Cdd:cd06582 171 GINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGLAESLA 243
|
250 260
....*....|....*....|....
gi 517055627 303 QLLgADDNIKPIVIGAVIVLAVIL 326
Cdd:cd06582 244 AAY-LSSGYKDAVAFVLLILVLLV 266
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
102-340 |
2.93e-14 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 72.85 E-value: 2.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 102 PAFSPWQAIVLACLASMGTGAILGAVNGWICEKWKLPSFIVTLgMLN-VASGLA--------RVVSDNSTITGLPQPFVD 172
Cdd:COG4603 108 PGLPGPLHLPLALLAGALAGALWAAIPGLLKARFGVNEVITTL-MLNyIALYLVnylvrgplRDPGSGFPQTPPIPESAR 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 173 FGNLIFWGIFPSIFLIAIVVVLIGWFVLRYTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTISGLTAGIAAMVYLL-- 250
Cdd:COG4603 187 LPRLLPGTRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgv 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 251 --RLNVGSPvAGIGYelNAIAAVIIGGtslsggkGSIVGTLVGACILQVLSTG---LQL-LGADDNIKPIVIGAVIVLAV 324
Cdd:COG4603 267 qgRLTPGFS-PGYGF--TGIAVALLGR-------NNPLGIILAALLFGALYVGgdaMQRaLGVPSEIVDVIQGLIILFVL 336
|
250
....*....|....*.
gi 517055627 325 ILDSYRGRLMRKLETR 340
Cdd:COG4603 337 AADFLIRYRLRRRRRK 352
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
61-336 |
9.66e-06 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 46.65 E-value: 9.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 61 IAINTVLAAGMTFVILVGGI----------DLSV-GSLLALCTVigATIMINPAFSPWqaivLACLASMGTGAILGAVNG 129
Cdd:COG4120 4 NLLIGALEQGLIYAIMALGVyitfrildfpDLTVdGSFPLGAAV--AAVLIVAGVNPF----LATLAAFLAGALAGLVTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 130 WICEKWKLPSF---IVTLGMLNvasglarvvSDNSTITGLP-----------QPFVDFGNLIFWGIFPSIFLIAIVVVLI 195
Cdd:COG4120 78 LLHTKLKIPPLlagILTMTALY---------SINLRIMGKPnipllgedtifTLLPDLGLPGDWAKLLVLLVIVLVIKLL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517055627 196 GWFVLRyTVFGRFVFAIGTNEEAVRLSGHEPKRYKIAVFTIS-GLTAGIAAMV--YLLRLNVGSpvaGIGYELNAIAAVI 272
Cdd:COG4120 149 LDWFLK-TELGLALRATGDNPQMARALGINTDRMKILGLALSnGLVALSGALVaqYQGFADVNM---GIGTIVIGLASVI 224
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 517055627 273 IgGTSLSGGKGSIVGTL---VGACILQVLSTGLQLLGADDNIKPIVIGAVIVLAVILDSYRGRLMRK 336
Cdd:COG4120 225 I-GEVLFGSRSILRRLLavvLGSILYRLIIALALQLGLPPNDLKLITALIVAIALALPQLKKKLKRK 290
|
|
| |
