|
Name |
Accession |
Description |
Interval |
E-value |
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
17-292 |
1.48e-77 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 237.74 E-value: 1.48e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 17 RRSYSYMALSPAALFLSVFFALPMGLMIGISFSQ-----EEVGGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVL 91
Cdd:COG1176 7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTrdpygGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 92 GYPVAYFLARSRSRWRAVVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPLPLSKNLFAVVVGLTHVVL 171
Cdd:COG1176 87 GYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 172 PFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVLATMISE 251
Cdd:COG1176 167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQ 246
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 516727377 252 QVLFYVDWPFAAVMANALLLLMLVISFVGVRFEALHRIRRS 292
Cdd:COG1176 247 QFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
31-279 |
2.51e-36 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 131.35 E-value: 2.51e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 31 FLSVFFALPMGLMIGISFSQEEVGG-----FSVESYRRFFtDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARSRSR 105
Cdd:PRK09497 18 WLVLFVFLPNLMIIGTSFLTRDDANfvkmvFTLDNYTRLL-DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 106 WRAVVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPLPLSKNLFAVVVGLTHVVLPFGILSLMTSIQGI 185
Cdd:PRK09497 97 VRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 186 DESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVLATMISEQVLFYVDWPFAAVM 265
Cdd:PRK09497 177 DKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAAT 256
|
250
....*....|....
gi 516727377 266 ANALLLLMLVISFV 279
Cdd:PRK09497 257 SITLTIVMGLMLLV 270
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
29-266 |
5.69e-13 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 68.94 E-value: 5.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 29 ALFLSVFFALPMGLMIGISFSQEEVGGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARSRSRWRA 108
Cdd:TIGR03262 11 ILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 109 VVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPlplsknlfAVVVGLTHVVLPFGILSLMTSIQGIDES 188
Cdd:TIGR03262 91 AFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSIYGFW--------GIVIGEVFYTFPHALMILVTALSLADGR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516727377 189 LERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGaGFKVLATMISEQVLFYVDWPFAAVMA 266
Cdd:TIGR03262 163 LYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG-DYNVLATDIYKQVIGQQNFPMGAVVG 239
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
77-266 |
1.91e-07 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 50.35 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 77 TAVMSGLVAIAVTVLGYPVAYFLARSRSRWRAVVFALALAPelagVVLRTYGWLIILedrgfindvLLDLGLISSPLPLS 156
Cdd:cd06261 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLL----LSLPSLVLGLLL---------VLLFGVLLGWGILP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 157 KNLFAVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPAL 236
Cdd:cd06261 71 GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSF 150
|
170 180 190
....*....|....*....|....*....|..
gi 516727377 237 LGGAGFKVLAT--MISEQVLFYVDWPFAAVMA 266
Cdd:cd06261 151 LGGGEAPGPGTglLLIFAILFPGDLGVAAAVA 182
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
158-283 |
4.32e-03 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 37.28 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 158 NLFAVVVGLTHVVLPFGILSLMTsIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALL 237
Cdd:pfam00528 52 ILPAIILALLGWAGYARLIRRAA-LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 516727377 238 GGAGFKVLATMISEQVLFYVDWPFAAVMANALLLLMLVISFVGVRF 283
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRL 176
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
17-292 |
1.48e-77 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 237.74 E-value: 1.48e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 17 RRSYSYMALSPAALFLSVFFALPMGLMIGISFSQ-----EEVGGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVL 91
Cdd:COG1176 7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTrdpygGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 92 GYPVAYFLARSRSRWRAVVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPLPLSKNLFAVVVGLTHVVL 171
Cdd:COG1176 87 GYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 172 PFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVLATMISE 251
Cdd:COG1176 167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQ 246
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 516727377 252 QVLFYVDWPFAAVMANALLLLMLVISFVGVRFEALHRIRRS 292
Cdd:COG1176 247 QFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
31-279 |
2.51e-36 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 131.35 E-value: 2.51e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 31 FLSVFFALPMGLMIGISFSQEEVGG-----FSVESYRRFFtDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARSRSR 105
Cdd:PRK09497 18 WLVLFVFLPNLMIIGTSFLTRDDANfvkmvFTLDNYTRLL-DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 106 WRAVVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPLPLSKNLFAVVVGLTHVVLPFGILSLMTSIQGI 185
Cdd:PRK09497 97 VRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 186 DESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVLATMISEQVLFYVDWPFAAVM 265
Cdd:PRK09497 177 DKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAAT 256
|
250
....*....|....
gi 516727377 266 ANALLLLMLVISFV 279
Cdd:PRK09497 257 SITLTIVMGLMLLV 270
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
14-266 |
5.42e-29 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 115.64 E-value: 5.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 14 SPIRRSYSYMALSPAALFLSVFFALPMGLMIGISFSQEevggfsVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGY 93
Cdd:COG1178 2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 94 PVAYFLARSRSRWRAVVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPLPLSknLFAVVVGLTHVVLPF 173
Cdd:COG1178 76 PLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPDIYG--LGGIILVLVLFNYPY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 174 GILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGaGFKVLATMISEQV 253
Cdd:COG1178 154 VYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGG-GYTTLTTAIYQAW 232
|
250
....*....|...
gi 516727377 254 LFYVDWPFAAVMA 266
Cdd:COG1178 233 LGDFDLGAAAALA 245
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
29-266 |
5.04e-27 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 105.96 E-value: 5.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 29 ALFLSVFFALPMGLMIGISFSQEEV-----GGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARSR 103
Cdd:COG1177 13 LALVLLFLYLPILVLVLYSFNDSWFltfppEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 104 SRWRAVVFALALAPelagvvlrtygwlIIledrgfINDVLLDLGLIS--SPLPLSKNLFAVVVGLTHVVLPFGILSLMTS 181
Cdd:COG1177 93 FRGRRLLLALLLLP-------------LV------VPGIVLGVALLLlfSALGLSGGLWGLILAHVVFTLPFVVLVVLAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 182 IQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVLATMISEQVLFYVDwPF 261
Cdd:COG1177 154 LQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGIS-PE 232
|
....*
gi 516727377 262 AAVMA 266
Cdd:COG1177 233 INALS 237
|
|
| PRK10683 |
PRK10683 |
putrescine transporter subunit: membrane component of ABC superfamily; Provisional |
90-266 |
7.59e-24 |
|
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Pssm-ID: 182646 Cd Length: 317 Bit Score: 98.63 E-value: 7.59e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 90 VLGYPVAYFLARSRSRWRAVVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPLPLSKNLFAVVVGLTHV 169
Cdd:PRK10683 115 LIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 170 VLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVLATMI 249
Cdd:PRK10683 195 YLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVL 274
|
170
....*....|....*..
gi 516727377 250 SEQVLFYVDWPFAAVMA 266
Cdd:PRK10683 275 WQEFFNNRDWPVASAVA 291
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
3-283 |
1.89e-23 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 97.13 E-value: 1.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 3 TITLAVPAASLSPIRRSYSYMALSPAALFLSVFFALPMGLMIGISFSQEEVGGFSV-----ESYRRFFTDGLSVAGFCRT 77
Cdd:COG1175 2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPefvglDNYARLFTDPRFWNALGNT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 78 AVMSGLVAIAVTVLGYPVAYFLARsRSRWRAVVFALALAPELAGVVLRTYGWLIIL-EDRGFINDVLLDLGlISSPLPLS 156
Cdd:COG1175 82 LLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFnPDYGLLNALLGALG-LEPINWLG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 157 K---NLFAVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYAT 233
Cdd:COG1175 160 DpslALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 516727377 234 PALLGGAG----FKVLATMISEQVLFYVDWPFAAVMANALLLLMLVISFVGVRF 283
Cdd:COG1175 240 VYVLTGGGpgnsTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRL 293
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
28-266 |
7.79e-23 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 97.92 E-value: 7.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 28 AALFLSVFFALPMGLMIGISFSQEEVGGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARSRSRWR 107
Cdd:COG1178 294 CLLLVLLGLLLPLLALLLWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLA 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 108 AVVFALALAPeLA--GVVLRTyGWLIILedrgfindvlldlgLISSPLPLSKNLFAVVVGLTHVVLPFGILSLMTSIQGI 185
Cdd:COG1178 374 RLLDRLAMLP-YAvpGIVLGL-GLLLLF--------------NRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQI 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 186 DESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVLATMISEQVLFYvDWPFAAVM 265
Cdd:COG1178 438 DPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSG-RYGEAAAL 516
|
.
gi 516727377 266 A 266
Cdd:COG1178 517 A 517
|
|
| COG4132 |
COG4132 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
9-253 |
1.08e-19 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443307 [Multi-domain] Cd Length: 286 Bit Score: 86.78 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 9 PAASLSPIRRSYSYMALSPAALFLSVFFALPMGLMIGISFsQEEVGGFSVESYRRFFTDgLSVAGFCRTAVMSGLVAIAV 88
Cdd:COG4132 2 TTASRRRRRKWLAWLGLLPFFLFVLLFLLLPTVWVVIGAF-QDDDGGFTLANYAELTSP-FYLQAFWNSIWLSLASALIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 89 TVLGYPVAYFLARSRSRW--RAVVFALALAPELAGVVLrTYGWLIILEDRGFINDVLLDLGLissPLPLSKNLFAVVvGL 166
Cdd:COG4132 80 AVIGLLLAYALRRGGPGWlrRAVLAFSGVASNFAGVPL-AFAFIATLGRNGLVTLLLKQLGI---DLYDGFNLYSFW-GL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 167 THVVL----PFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGF 242
Cdd:COG4132 155 ILVYLyfqiPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYATAYALTGGNY 234
|
250
....*....|.
gi 516727377 243 KVLATMISEQV 253
Cdd:COG4132 235 NLVPIRIGALI 245
|
|
| ModB |
COG4149 |
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ... |
81-224 |
3.00e-18 |
|
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443320 [Multi-domain] Cd Length: 223 Bit Score: 81.25 E-value: 3.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 81 SGLVAIAVTVLGYPVAYFLARSRSRWRAVVFA-----LALAPELAGVVLrtygwLIILEDRGFINDVLLDLGLISsplpL 155
Cdd:COG4149 16 ALIATLLLLLLGIPLAWWLARTRFRGKGLLEAlvtlpLVLPPTVLGFYL-----LLLFGRNGPLGQLLEELFGIS----L 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 516727377 156 SKNLFAVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSF 224
Cdd:COG4149 87 VFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAF 155
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
28-227 |
5.62e-17 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 78.98 E-value: 5.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 28 AALFLSVFFALPMGLMIGISF-SQEEV---------GGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAY 97
Cdd:COG0395 20 LLILLALLFLFPLYWMVVTSFkPPAEIfsgppsllpSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 98 FLARSRSRWRAVVFALALAPELAGVVLRTYGWLIILedrgfindvlLDLGLISSPLPLsknlfaVVVGLThVVLPFGILS 177
Cdd:COG0395 100 ALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLF----------RQLGLLNTYWGL------ILPYLA-FGLPFGIFL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 516727377 178 LMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMA 227
Cdd:COG0395 163 LRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGA 212
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
14-231 |
2.25e-16 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 77.10 E-value: 2.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 14 SPIRRSYSYMALSPAALFLSVFFALPMGLMIGISFSQeevggfSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGY 93
Cdd:COG0555 2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGL------GWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 94 PVAYFLARSRSRWRAVVFAL-----ALAPELAGVVLrtygwLIILEDRGFINDVLLDLGL--ISSPLplsknlfAVVVGL 166
Cdd:COG0555 76 PLAWVLVRYRFPGKRLVDALvdlpfALPTAVAGIAL-----LLLFGPNGWLGQLLAPLGIkvAFTPL-------GIVLAQ 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516727377 167 THVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAY 231
Cdd:COG0555 144 TFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
29-266 |
5.69e-13 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 68.94 E-value: 5.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 29 ALFLSVFFALPMGLMIGISFSQEEVGGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARSRSRWRA 108
Cdd:TIGR03262 11 ILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 109 VVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLDLGLISSPlplsknlfAVVVGLTHVVLPFGILSLMTSIQGIDES 188
Cdd:TIGR03262 91 AFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSIYGFW--------GIVIGEVFYTFPHALMILVTALSLADGR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516727377 189 LERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGaGFKVLATMISEQVLFYVDWPFAAVMA 266
Cdd:TIGR03262 163 LYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG-DYNVLATDIYKQVIGQQNFPMGAVVG 239
|
|
| potC |
PRK09500 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
30-245 |
5.19e-11 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 236542 [Multi-domain] Cd Length: 256 Bit Score: 61.54 E-value: 5.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 30 LFLSVFFA---LPMGLMIGISFSQEEVG----GFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARS 102
Cdd:PRK09500 8 GFMTLVYAylyIPIIILIVNSFNSSRFGinwkGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 103 RSRWRAVV----FALALAPELAGVVlrtygwliiledrgfindVLLDLGLIsspLPLSKNLFAVVVGLTHVVLPFGILSL 178
Cdd:PRK09500 88 RFRGKKFVsgmlFVVMMSPDIVMAI------------------SLLVLFML---LGIQLGFWSLLFAHITFCLPFVVVTV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516727377 179 MTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLGGAGFKVL 245
Cdd:PRK09500 147 YSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEIL 213
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
82-224 |
4.81e-08 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 52.62 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 82 GLVAIAVTV-LGYPVAYFLARSRSRWRAVVFALALAPELAGVVLRTYGWLIILEDRGFINDVLLD-LGLISSPLPLSKNL 159
Cdd:PRK09421 18 SSVAVLFSLpFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEwFGISFAFSWRGAAL 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516727377 160 FAVVVGLthvvlPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSF 224
Cdd:PRK09421 98 AAAVMAF-----PLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
7-266 |
7.87e-08 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 52.70 E-value: 7.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 7 AVPAASLSPIRRSYSYMALSPAALFLSVFFALPMGLMIGISFSQEevGGFSVESYRRFFTDGLSVAGFCRTAVMSGLVAI 86
Cdd:PRK15050 10 AAHAAAARRRRRLRPLLWLLLPLLVLAPLVVYPLVRVVLQSLTGE--HGLGLATYRAVLGSPDFRGALLTTLQIAFASTA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 87 AVTVLGYPVAYFL-------ARSRSRWRAVVFALAlapelagVVLRTYGWLIILEDRGFINDVLLDL-GLISSPLPLSKN 158
Cdd:PRK15050 88 GCLVLGVLLALVLafvpfpgASLVGRFIDTFVAFP-------SFLITLAFTFLYGSAGSVNIALQRLfGLEAPPLDFLYS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 159 LFAVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALLG 238
Cdd:PRK15050 161 PGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTG 240
|
250 260
....*....|....*....|....*...
gi 516727377 239 GAGFKVLATMISEQVLFYVDWPFAAVMA 266
Cdd:PRK15050 241 AKDVVTLPVLIYSKAIVDFDYPTACAIA 268
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
66-239 |
1.13e-07 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 51.55 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 66 TDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARSR---SRW--RAVVFALALAPELAGVVLRT-YGwliileDRGFI 139
Cdd:CHL00187 49 TEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNfpgKRLldAAVDLPFALPTSVAGLTLATvYG------DNGWI 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 140 NDVLLDLGLIsspLPLSKnlFAVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSS 219
Cdd:CHL00187 123 GHLLSHLGIQ---IVFTK--LGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTG 197
|
170 180
....*....|....*....|
gi 516727377 220 LLLSFTMAASAYATPALLGG 239
Cdd:CHL00187 198 LALTFSRAIGEYGSIVIISS 217
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
77-266 |
1.91e-07 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 50.35 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 77 TAVMSGLVAIAVTVLGYPVAYFLARSRSRWRAVVFALALAPelagVVLRTYGWLIILedrgfindvLLDLGLISSPLPLS 156
Cdd:cd06261 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLL----LSLPSLVLGLLL---------VLLFGVLLGWGILP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 157 KNLFAVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPAL 236
Cdd:cd06261 71 GLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSF 150
|
170 180 190
....*....|....*....|....*....|..
gi 516727377 237 LGGAGFKVLAT--MISEQVLFYVDWPFAAVMA 266
Cdd:cd06261 151 LGGGEAPGPGTglLLIFAILFPGDLGVAAAVA 182
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
23-225 |
1.78e-04 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 42.43 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 23 MALSPAALFLSVFFALPMGLMIgISFSQeevggFSVESYRRFFTDGLSVAGFCRTAVMSGLVAIAVTVLGYPVAYFLARS 102
Cdd:PRK10971 15 LSLGTSLLFVCLILLLPLSALV-MQLSQ-----MSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 103 RSRWRAVVFAL-----ALAPELAGVVLRTygwliILEDRGFINDVLLDLGLissplPLSKNLFAVVVGLTHVVLPFGILS 177
Cdd:PRK10971 89 RFPGRTLLDALmdlpfALPTAVAGLTLAS-----LFSVNGWYGEWLAKFDI-----KVTYTWLGIAVAMAFTSIPFVVRT 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 516727377 178 LMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFT 225
Cdd:PRK10971 159 VQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
152-227 |
2.01e-04 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 42.38 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 152 PLPLSKNLFAVVVGLTHVVLPFgILSLMT-SIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSF------ 224
Cdd:COG0573 149 WPPSGFSLLTAGIVLAIMILPT-ITSLSRdALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLgralge 227
|
...
gi 516727377 225 TMA 227
Cdd:COG0573 228 TMA 230
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
161-227 |
4.53e-04 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 40.90 E-value: 4.53e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516727377 161 AVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMA 227
Cdd:COG0600 127 SKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLA 193
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
143-224 |
9.35e-04 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 40.02 E-value: 9.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 143 LLDLGLISSPLPLSKNLFAVVVGLTHVVLPFGILSLMTSIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLL 222
Cdd:COG0581 98 LFGYALFVLTLGLGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVIL 177
|
..
gi 516727377 223 SF 224
Cdd:COG0581 178 AI 179
|
|
| malG |
PRK10998 |
maltose ABC transporter permease MalG; |
185-237 |
3.85e-03 |
|
maltose ABC transporter permease MalG;
Pssm-ID: 182891 Cd Length: 296 Bit Score: 38.15 E-value: 3.85e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 516727377 185 IDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALL 237
Cdd:PRK10998 184 IDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLL 236
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
158-283 |
4.32e-03 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 37.28 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 158 NLFAVVVGLTHVVLPFGILSLMTsIQGIDESLERAAQMLGASRVSVVRHVIVPLSVPGIVSSLLLSFTMAASAYATPALL 237
Cdd:pfam00528 52 ILPAIILALLGWAGYARLIRRAA-LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 516727377 238 GGAGFKVLATMISEQVLFYVDWPFAAVMANALLLLMLVISFVGVRF 283
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRL 176
|
|
| PseudoU_synth_ScPUS7 |
cd02576 |
Pseudouridine synthase, TruD family; This group consists of eukaryotic pseudouridine synthases ... |
124-236 |
4.80e-03 |
|
Pseudouridine synthase, TruD family; This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Saccharomyces cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA), psi13 in cytoplasmic tRNAs and psi35 in pre-tRNATyr. Psi35 in yeast U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Pssm-ID: 211341 [Multi-domain] Cd Length: 371 Bit Score: 37.98 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516727377 124 LRTYGWLIILEDRGF-INDVLLDLGLISSPLPLSKNLFAVVVGLTHVVLPFgilSLMTSiqgidesLERAAQMLGASRVS 202
Cdd:cd02576 268 IKLYGLKVVEGDLVIvIYDVVLPLPGHDVIYPSNEIGEWYKEVLSKDGLDP---DNMRR-------KEREFSLSGGYRKI 337
|
90 100 110
....*....|....*....|....*....|....
gi 516727377 203 VVRhvivPLSVPGIVSSLLLSFTMAASAYATPAL 236
Cdd:cd02576 338 LVK----PKNLEYSFLALKLKFSLPSSSYATMAL 367
|
|
| |
