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Conserved domains on  [gi|516538509|ref|WP_017926134|]
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ABC-type transport auxiliary lipoprotein family protein [Thioalkalivibrio sp. HL-Eb18]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-202 3.30e-17

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 76.57  E-value: 3.30e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509   1 MNWWKGPILMLAALVLGGCTLLPEREPLDRswYLLELPDDPAARTADEPVAVELGSVRVAPAYAGNGLVYRLGNHQYESD 80
Cdd:COG3218    4 RRLLRLLLLLLLALLLAGCSSLPAPPPPTL--YDLTPPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509  81 YYNEWFLKPSEQLEQLLRERWTRNGAALELVDNASAVreqgRPAVRVHVLITALYGDLEGTdavesngvvTGAGHMGLRA 160
Cdd:COG3218   82 AGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGL----AADYRLEGELRDFEQDFDGG---------APRAVVELRA 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 516538509 161 QLSQGDRSRLV---HLESEQALERRSASQLVSALSRATAEVLADL 202
Cdd:COG3218  149 RLVDDRDGRVVasrRFEARVPAASADAAGVVAALNQALDQLLAEI 193
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-202 3.30e-17

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 76.57  E-value: 3.30e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509   1 MNWWKGPILMLAALVLGGCTLLPEREPLDRswYLLELPDDPAARTADEPVAVELGSVRVAPAYAGNGLVYRLGNHQYESD 80
Cdd:COG3218    4 RRLLRLLLLLLLALLLAGCSSLPAPPPPTL--YDLTPPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509  81 YYNEWFLKPSEQLEQLLRERWTRNGAALELVDNASAVreqgRPAVRVHVLITALYGDLEGTdavesngvvTGAGHMGLRA 160
Cdd:COG3218   82 AGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGL----AADYRLEGELRDFEQDFDGG---------APRAVVELRA 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 516538509 161 QLSQGDRSRLV---HLESEQALERRSASQLVSALSRATAEVLADL 202
Cdd:COG3218  149 RLVDDRDGRVVasrRFEARVPAASADAAGVVAALNQALDQLLAEI 193
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 38-202 2.92e-04

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 40.00  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509   38 PDDPAARTADEPV-AVELGSVRVAPAYAGNGLVYRLGNHQYESDYYNEWflkpSEQLEQLLRERWTRNgaaLELVDNASA 116
Cdd:pfam03886   1 PAPAATPAASSPQpQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARW----AEPLDDQITRALAAD---LSRRLPSRR 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509  117 VREQG-----RPAVRVHVLITALYGDLEGtdavesNGVVTGaghmglraqlsqgdRSRLVHLESEQALERRSASQ----- 186
Cdd:pfam03886  74 VAAFPwplggTPDYRLQVDVRRFDGRPGG------NAVLEA--------------RWTLLDAGGGRVLTSRSFRIsepva 133

                         170       180
                  ....*....|....*....|..
gi 516538509  187 ------LVSALSRATAEVLADL 202
Cdd:pfam03886 134 gdgyaaLVAALSQALAQLAAQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 1-202 3.30e-17

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 76.57  E-value: 3.30e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509   1 MNWWKGPILMLAALVLGGCTLLPEREPLDRswYLLELPDDPAARTADEPVAVELGSVRVAPAYAGNGLVYRLGNHQYESD 80
Cdd:COG3218    4 RRLLRLLLLLLLALLLAGCSSLPAPPPPTL--YDLTPPLPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509  81 YYNEWFLKPSEQLEQLLRERWTRNGAALELVDNASAVreqgRPAVRVHVLITALYGDLEGTdavesngvvTGAGHMGLRA 160
Cdd:COG3218   82 AGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGL----AADYRLEGELRDFEQDFDGG---------APRAVVELRA 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 516538509 161 QLSQGDRSRLV---HLESEQALERRSASQLVSALSRATAEVLADL 202
Cdd:COG3218  149 RLVDDRDGRVVasrRFEARVPAASADAAGVVAALNQALDQLLAEI 193
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 1-206 3.66e-16

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 73.49  E-value: 3.66e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509   1 MNWWKGPILMLAALVLGGCTLLPERepldrSWYLLELPDDPAAR-TADEPVAVELGSVRVAPAYAGNGLVYRLGNHQYES 79
Cdd:COG3009    2 KRPLRLLLLLLLALLLAACASSPPT-----RYYTLPPPAAPAAAaAAAAAPVIEVGPVSLPDYLDRPQIVYRTGDGRLVI 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509  80 DYYNEWFLKPSEQLEQLLRERWTRNGAALELVDNASAVReqGRPAVRVHVLITALYGDLEGtdavesNGVVTGaghmglR 159
Cdd:COG3009   77 AENHRWAEPLSDQLTRALAANLAARLPGARVAAQPWPLA--GRPDYRLRVDVTRFDGRPDG------QAVLSA------Q 142

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 516538509 160 AQLSQGDRSRLVHLES---EQALERRSASQLVSALSRATAEVLADLEDAI 206
Cdd:COG3009  143 WSLRRGGGGGPLLSRRfsiEEPLAGDGYDALVAALSQALAQLADQIAAAL 192
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 38-202 2.92e-04

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 40.00  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509   38 PDDPAARTADEPV-AVELGSVRVAPAYAGNGLVYRLGNHQYESDYYNEWflkpSEQLEQLLRERWTRNgaaLELVDNASA 116
Cdd:pfam03886   1 PAPAATPAASSPQpQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARW----AEPLDDQITRALAAD---LSRRLPSRR 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516538509  117 VREQG-----RPAVRVHVLITALYGDLEGtdavesNGVVTGaghmglraqlsqgdRSRLVHLESEQALERRSASQ----- 186
Cdd:pfam03886  74 VAAFPwplggTPDYRLQVDVRRFDGRPGG------NAVLEA--------------RWTLLDAGGGRVLTSRSFRIsepva 133

                         170       180
                  ....*....|....*....|..
gi 516538509  187 ------LVSALSRATAEVLADL 202
Cdd:pfam03886 134 gdgyaaLVAALSQALAQLAAQI 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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