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Conserved domains on  [gi|516480620|ref|WP_017869064|]
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phytoene desaturase family protein [Deinococcus wulumuqiensis]

Protein Classification

phytoene desaturase family protein( domain architecture ID 1001200)

phytoene desaturase family protein from the CrtI family, whose members catalyze multiple desaturation reactions on phytoene, generating a large diversity of molecules that can then be cyclized and produce many different carotenoids

Gene Ontology:  GO:0016491|GO:0016117

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
crtI_fam super family cl37159
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 19-541 1.34e-180

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


The actual alignment was detected with superfamily member TIGR02734:

Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 517.60  E-value: 1.34e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   19 ALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTpDGYVFDMGPTVITVPHFIEELFALerdrahldapdyp 98
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-DGFRFDTGPTVITMPEALEELFAL------------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   99 pevlsgervrggvsGGPRTSEYVTLVPILPFYRIVFHDGTFFDYDGDPDSTRRQIAELAPQDLAGYERFHADAEAIFRRG 178
Cdd:TIGR02734  67 --------------AGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREG 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  179 FLELGYTHFGDVPTMLRVV-PDLLKLDAVRTLFSFTSKYFQSDKMRQVFSFETLLVGGNPLNVPAIYAMIHFVEKTWGIH 257
Cdd:TIGR02734 133 YRKLGYVPFLSPRDLLRADaPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVW 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  258 YALGGTGALVRGLVRKFGELGGTIRYGAGVKEIVVDGrlpgqRTARGVRLESGEELEADLVASNGDWANTYLKRVPARAR 337
Cdd:TIGR02734 213 FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEG-----GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPR 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  338 LVNSDLRVRAARQSMGLLVVYFGFRGGDELP--LKHHNILLGPRYEALLTEIFGKKVLGEDFSQYLHVPTLTDPDLAPAG 415
Cdd:TIGR02734 288 RRYPAARLSRKRPSPSLFVLYFGLLGVDGHWpqLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPG 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  416 HHAAYTLVPVPHNGSG-IDWKVEGPRLADAALADIEARGlIPGLRGRLTHFEFVTPDYFEGTLDSYLGNAFGPEPQLVQS 494
Cdd:TIGR02734 368 CESLYVLAPVPHLGTAdVDWSVEGPRYRDRILAYLEERA-IPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQS 446

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*..
gi 516480620  495 AFFRPHNRSEDVRNLYLVGAGAQPGAGTPSVMMSAKMTARLIAEDFG 541
Cdd:TIGR02734 447 AWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLA 493
 
Name Accession Description Interval E-value
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 19-541 1.34e-180

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 517.60  E-value: 1.34e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   19 ALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTpDGYVFDMGPTVITVPHFIEELFALerdrahldapdyp 98
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-DGFRFDTGPTVITMPEALEELFAL------------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   99 pevlsgervrggvsGGPRTSEYVTLVPILPFYRIVFHDGTFFDYDGDPDSTRRQIAELAPQDLAGYERFHADAEAIFRRG 178
Cdd:TIGR02734  67 --------------AGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREG 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  179 FLELGYTHFGDVPTMLRVV-PDLLKLDAVRTLFSFTSKYFQSDKMRQVFSFETLLVGGNPLNVPAIYAMIHFVEKTWGIH 257
Cdd:TIGR02734 133 YRKLGYVPFLSPRDLLRADaPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVW 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  258 YALGGTGALVRGLVRKFGELGGTIRYGAGVKEIVVDGrlpgqRTARGVRLESGEELEADLVASNGDWANTYLKRVPARAR 337
Cdd:TIGR02734 213 FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEG-----GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPR 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  338 LVNSDLRVRAARQSMGLLVVYFGFRGGDELP--LKHHNILLGPRYEALLTEIFGKKVLGEDFSQYLHVPTLTDPDLAPAG 415
Cdd:TIGR02734 288 RRYPAARLSRKRPSPSLFVLYFGLLGVDGHWpqLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPG 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  416 HHAAYTLVPVPHNGSG-IDWKVEGPRLADAALADIEARGlIPGLRGRLTHFEFVTPDYFEGTLDSYLGNAFGPEPQLVQS 494
Cdd:TIGR02734 368 CESLYVLAPVPHLGTAdVDWSVEGPRYRDRILAYLEERA-IPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQS 446

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*..
gi 516480620  495 AFFRPHNRSEDVRNLYLVGAGAQPGAGTPSVMMSAKMTARLIAEDFG 541
Cdd:TIGR02734 447 AWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLA 493
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 14-541 4.63e-156

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 454.69  E-value: 4.63e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  14 TRRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQkRTPDGYVFDMGPTVITVPHFIEELFALerdrahLD 93
Cdd:COG1233    1 MMMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRART-FERPGFRFDVGPSVLTMPGVLERLFRE------LG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  94 APDYppevlsgervrggvsggprtseyVTLVPILPFYRIVFHDGTFFDYDGDPDSTRRQIAELAPQDLAGYERFHADAEA 173
Cdd:COG1233   74 LEDY-----------------------LELVPLDPAYRVPFPDGRALDLPRDLERTAAELERLFPGDAEAYRRFLAELRR 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 174 IFRRGFLELGYTHFGDVPTMLR--VVPDLLKLdAVRTLFSFTSKYFQSDKMRQVFSFETLLVGGNPLNVPAIYAMIHFVE 251
Cdd:COG1233  131 LYDALLEDLLYRPLLSLRDLLRplALARLLRL-LLRSLRDLLRRYFKDPRLRALLAGQALYLGLSPDRTPALYALIAYLE 209

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 252 KTWGIHYALGGTGALVRGLVRKFGELGGTIRYGAGVKEIVVDGRlpgqrTARGVRLESGEELEADLVASNGDWANTYLKR 331
Cdd:COG1233  210 YAGGVWYPKGGMGALADALARLAEELGGEIRTGAEVERILVEGG-----RATGVRLADGEEIRADAVVSNADPAHTYLRL 284

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 332 VPARARLVNSDLRVRAARQSMGLLVVYFGFRGgdELP-LKHHNILLGPRYEALLTEIFgKKVLGEDFSQYLHVPTLTDPD 410
Cdd:COG1233  285 LGEEALPARYRRRLERFRYSPSAFKLYLGLDG--PLPgLAHHTIHLSEDYEAAFDDIF-RGRLPEDPSLYVSIPSLTDPS 361

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 411 LAPAGHHAAYTLVPVPHnGSGIDWKVEGPRLADAALADIEARGliPGLRGRLTHFEFVTPDYFEGTLDSYLGNAFGPEPQ 490
Cdd:COG1233  362 LAPEGKHTLWVLVPVPY-GLEDAWDELKEEYAERILARLERYA--PGLRDRIVAREVLTPLDFERYLNLVGGAIYGGAHT 438

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|.
gi 516480620 491 LVQSAFFRPHNRSEDVRNLYLVGAGAQPGAGTPSVMMSAKMTARLIAEDFG 541
Cdd:COG1233  439 LDQSAFFRPSNYRTPIPGLYLVGASTHPGGGVPGVLISGRLAARRILKDLK 489
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 26-536 9.17e-20

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 92.17  E-value: 9.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   26 FGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTpDGYVFDMGPTVITVPHfiEELFALERDrahLDAPDYPPEVLSGE 105
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRD-DGFLIELGAMWFHGAQ--PPLLALLKE---LGLEDRLVLPDPAP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  106 RVRGGVSGGPRTSEYVTLVPILpfYRIVFHDGTFFDYdgdPDSTRRQIAELAPQDLAGYERFHADAEAIFRrgflELGYT 185
Cdd:pfam01593  75 FYTVLFAGGRRYPGDFRRVPAG--WEGLLEFGRLLSI---PEKLRLGLAALASDALDEFDLDDFSLAESLL----FLGRR 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  186 HFGDVPTMlrvvpDLLKLDAVRTLFSFTSKYFQSDKMrqvfsfetllvggNPLNVPAIYAMIHFVEKTWGIHYALGGTGA 265
Cdd:pfam01593 146 GPGDVEVW-----DRLIDPELFAALPFASGAFAGDPS-------------ELSAGLALPLLWALLGEGGSLLLPRGGLGA 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  266 LVRGLVRKFgeLGGTIRYGAGVKEIVVDGrlpgqrTARGVRLESGEELEADLVASNGDWANtyLKRVPARARLvnSDLRV 345
Cdd:pfam01593 208 LPDALAAQL--LGGDVRLNTRVRSIDREG------DGVTVTLTDGEVIEADAVIVTVPLGV--LKRILFTPPL--PPEKA 275

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  346 RAARQ--SMGLLVVYFGFRGgdelPLKHHNILLGPRYEALlteifgkKVLGEDFSqylhvpTLTDPDLAPAGHHaaytLV 423
Cdd:pfam01593 276 RAIRNlgYGPVNKVHLEFDR----KFWPDLGLLGLLSELL-------TGLGTAFS------WLTFPNRAPPGKG----LL 334

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  424 PVPHNGSGiDWKVEGPRLADAALADIeARGLIPGLRGRL-THFEFVTPDYFegTLDSYLGNAFGPEPQLVQSAFFRPHNR 502
Cdd:pfam01593 335 LLVYVGPG-DRARELEGLSDEELLQA-VLRDLRKLFGEEaPEPLRVLVSDW--HTDPWPRGSYSLPQYGPGHDDYRPLAR 410

                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 516480620  503 SEDvRNLYLVGAG-AQPGAGT-PSVMMSAKMTARLI 536
Cdd:pfam01593 411 TPD-PGLFFAGEHtSTGYPGTvEGAIESGRRAARAV 445
PLN03000 PLN03000
amine oxidase
 16-77 1.32e-05

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 48.09  E-value: 1.32e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516480620  16 RKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTPDGYV---FDMGPTVITVPH 77
Cdd:PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVgaaADLGGSVLTGTL 248
 
Name Accession Description Interval E-value
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 19-541 1.34e-180

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 517.60  E-value: 1.34e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   19 ALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTpDGYVFDMGPTVITVPHFIEELFALerdrahldapdyp 98
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-DGFRFDTGPTVITMPEALEELFAL------------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   99 pevlsgervrggvsGGPRTSEYVTLVPILPFYRIVFHDGTFFDYDGDPDSTRRQIAELAPQDLAGYERFHADAEAIFRRG 178
Cdd:TIGR02734  67 --------------AGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREG 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  179 FLELGYTHFGDVPTMLRVV-PDLLKLDAVRTLFSFTSKYFQSDKMRQVFSFETLLVGGNPLNVPAIYAMIHFVEKTWGIH 257
Cdd:TIGR02734 133 YRKLGYVPFLSPRDLLRADaPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVW 212

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  258 YALGGTGALVRGLVRKFGELGGTIRYGAGVKEIVVDGrlpgqRTARGVRLESGEELEADLVASNGDWANTYLKRVPARAR 337
Cdd:TIGR02734 213 FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEG-----GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPR 287

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  338 LVNSDLRVRAARQSMGLLVVYFGFRGGDELP--LKHHNILLGPRYEALLTEIFGKKVLGEDFSQYLHVPTLTDPDLAPAG 415
Cdd:TIGR02734 288 RRYPAARLSRKRPSPSLFVLYFGLLGVDGHWpqLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPG 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  416 HHAAYTLVPVPHNGSG-IDWKVEGPRLADAALADIEARGlIPGLRGRLTHFEFVTPDYFEGTLDSYLGNAFGPEPQLVQS 494
Cdd:TIGR02734 368 CESLYVLAPVPHLGTAdVDWSVEGPRYRDRILAYLEERA-IPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQS 446

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*..
gi 516480620  495 AFFRPHNRSEDVRNLYLVGAGAQPGAGTPSVMMSAKMTARLIAEDFG 541
Cdd:TIGR02734 447 AWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLA 493
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 14-541 4.63e-156

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 454.69  E-value: 4.63e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  14 TRRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQkRTPDGYVFDMGPTVITVPHFIEELFALerdrahLD 93
Cdd:COG1233    1 MMMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRART-FERPGFRFDVGPSVLTMPGVLERLFRE------LG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  94 APDYppevlsgervrggvsggprtseyVTLVPILPFYRIVFHDGTFFDYDGDPDSTRRQIAELAPQDLAGYERFHADAEA 173
Cdd:COG1233   74 LEDY-----------------------LELVPLDPAYRVPFPDGRALDLPRDLERTAAELERLFPGDAEAYRRFLAELRR 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 174 IFRRGFLELGYTHFGDVPTMLR--VVPDLLKLdAVRTLFSFTSKYFQSDKMRQVFSFETLLVGGNPLNVPAIYAMIHFVE 251
Cdd:COG1233  131 LYDALLEDLLYRPLLSLRDLLRplALARLLRL-LLRSLRDLLRRYFKDPRLRALLAGQALYLGLSPDRTPALYALIAYLE 209

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 252 KTWGIHYALGGTGALVRGLVRKFGELGGTIRYGAGVKEIVVDGRlpgqrTARGVRLESGEELEADLVASNGDWANTYLKR 331
Cdd:COG1233  210 YAGGVWYPKGGMGALADALARLAEELGGEIRTGAEVERILVEGG-----RATGVRLADGEEIRADAVVSNADPAHTYLRL 284

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 332 VPARARLVNSDLRVRAARQSMGLLVVYFGFRGgdELP-LKHHNILLGPRYEALLTEIFgKKVLGEDFSQYLHVPTLTDPD 410
Cdd:COG1233  285 LGEEALPARYRRRLERFRYSPSAFKLYLGLDG--PLPgLAHHTIHLSEDYEAAFDDIF-RGRLPEDPSLYVSIPSLTDPS 361

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 411 LAPAGHHAAYTLVPVPHnGSGIDWKVEGPRLADAALADIEARGliPGLRGRLTHFEFVTPDYFEGTLDSYLGNAFGPEPQ 490
Cdd:COG1233  362 LAPEGKHTLWVLVPVPY-GLEDAWDELKEEYAERILARLERYA--PGLRDRIVAREVLTPLDFERYLNLVGGAIYGGAHT 438

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|.
gi 516480620 491 LVQSAFFRPHNRSEDVRNLYLVGAGAQPGAGTPSVMMSAKMTARLIAEDFG 541
Cdd:COG1233  439 LDQSAFFRPSNYRTPIPGLYLVGASTHPGGGVPGVLISGRLAARRILKDLK 489
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 26-536 9.17e-20

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 92.17  E-value: 9.17e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620   26 FGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTpDGYVFDMGPTVITVPHfiEELFALERDrahLDAPDYPPEVLSGE 105
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVRD-DGFLIELGAMWFHGAQ--PPLLALLKE---LGLEDRLVLPDPAP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  106 RVRGGVSGGPRTSEYVTLVPILpfYRIVFHDGTFFDYdgdPDSTRRQIAELAPQDLAGYERFHADAEAIFRrgflELGYT 185
Cdd:pfam01593  75 FYTVLFAGGRRYPGDFRRVPAG--WEGLLEFGRLLSI---PEKLRLGLAALASDALDEFDLDDFSLAESLL----FLGRR 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  186 HFGDVPTMlrvvpDLLKLDAVRTLFSFTSKYFQSDKMrqvfsfetllvggNPLNVPAIYAMIHFVEKTWGIHYALGGTGA 265
Cdd:pfam01593 146 GPGDVEVW-----DRLIDPELFAALPFASGAFAGDPS-------------ELSAGLALPLLWALLGEGGSLLLPRGGLGA 207

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  266 LVRGLVRKFgeLGGTIRYGAGVKEIVVDGrlpgqrTARGVRLESGEELEADLVASNGDWANtyLKRVPARARLvnSDLRV 345
Cdd:pfam01593 208 LPDALAAQL--LGGDVRLNTRVRSIDREG------DGVTVTLTDGEVIEADAVIVTVPLGV--LKRILFTPPL--PPEKA 275

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  346 RAARQ--SMGLLVVYFGFRGgdelPLKHHNILLGPRYEALlteifgkKVLGEDFSqylhvpTLTDPDLAPAGHHaaytLV 423
Cdd:pfam01593 276 RAIRNlgYGPVNKVHLEFDR----KFWPDLGLLGLLSELL-------TGLGTAFS------WLTFPNRAPPGKG----LL 334

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  424 PVPHNGSGiDWKVEGPRLADAALADIeARGLIPGLRGRL-THFEFVTPDYFegTLDSYLGNAFGPEPQLVQSAFFRPHNR 502
Cdd:pfam01593 335 LLVYVGPG-DRARELEGLSDEELLQA-VLRDLRKLFGEEaPEPLRVLVSDW--HTDPWPRGSYSLPQYGPGHDDYRPLAR 410

                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 516480620  503 SEDvRNLYLVGAG-AQPGAGT-PSVMMSAKMTARLI 536
Cdd:pfam01593 411 TPD-PGLFFAGEHtSTGYPGTvEGAIESGRRAARAV 445
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
21-77 8.73e-10

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 54.84  E-value: 8.73e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 516480620   21 VVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTPdGYVFDMGPTVITVPH 77
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVP-GYVFDYGAHIFHGSD 56
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
14-318 1.47e-09

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 60.32  E-value: 1.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  14 TRRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTPD-GYVFDMGPTVITVPHfieelfalerdrahl 92
Cdd:COG1231    5 ARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRVWTLRFGDdGLYAELGAMRIPPSH--------------- 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  93 dapdyppevlsgervrggvsggPRTSEYVTL--VPILPFYRivFHDGTFFDYDGDPDSTRRQIAELAP--QDLAGYERFH 168
Cdd:COG1231   70 ----------------------TNLLALARElgLPLEPFPN--ENGNALLYLGGKRVRAGEIAADLRGvaELLAKLLRAL 125

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 169 ADAEAIFRRGFLELgythfgDVPTMLRVVPDLLKLDAVRTLFSFtskyfqsdkmrqvfsFETLLVGGNPLNVPAIYAMIH 248
Cdd:COG1231  126 AAALDPWAHPAAEL------DRESLAEWLRRNGASPSARRLLGL---------------LGAGEYGADPDELSLLDLLRY 184

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 516480620 249 FVEKTWGIHYAL--GGTGALVRGLVRkfgELGGTIRYGAGVKEIVvdgrlpgqRTARGVRLES--GEELEADLV 318
Cdd:COG1231  185 AASAGGGAQQFRivGGMDQLPRALAA---ELGDRIRLGAPVTRIR--------QDGDGVTVTTddGGTVRADAV 247
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 16-538 4.47e-09

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 58.69  E-value: 4.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  16 RKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTpDGYVFDMGptvitvPHFIeelfaLERDRAHLDAP 95
Cdd:COG1232    1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEV-DGFRIDRG------PHSF-----LTRDPEVLELL 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  96 DyppEVLSGERVRGGVSGGPRtseyvtlvpilpfyriVFHDGTFFDYDGDPDSTRRQiAELAPQDL--AGYERFHADAEA 173
Cdd:COG1232   69 R---ELGLGDELVWPNTRKSY----------------IYYGGKLHPLPQGPLALLRS-PLLSLAGKlrALLELLAPRRPP 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 174 IFRRGFLELGYTHFGDvptmlrvvpdllklDAVRTLFS-FTSKYFQSDK----MRQVFSF--ETLLVGGNplnvpAIYAM 246
Cdd:COG1232  129 GEDESLAEFVRRRFGR--------------EVYERLVEpLLEGVYAGDPdelsADWAFPRlkRLELEHGS-----LIKGA 189

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 247 IHFVEKTWG---IHYALGGTGALVRGLVRKFGElgGTIRYGAGVKEIVVDGRlpgqrtARGVRLESGEELEADLVASNgd 323
Cdd:COG1232  190 LALRKGAKAgevFGYLRGGLGTLVEALAEALEA--GEIRLGTRVTAIEREGG------GWRVTTSDGETIEADAVVSA-- 259

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 324 wantylkrVPAR--ARLVNS-DLRVRAARQSM---GLLVVYFGFRGGDELPLKHHNILL--GPRYEALLTEIFGKKVlge 395
Cdd:COG1232  260 --------TPAPalARLLAPlPPEVAAALAGIpyaSVAVVALGFDRPDLPPPDGFGWLVprDEGVPILAVTFSSNKW--- 328

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 396 dfsqylhvptltdPDLAPAGHHaaytLVP--VPHNGSGIDWKVEGPRLADAALADIEARGLIPG--LRGRLTHFEFVTPD 471
Cdd:COG1232  329 -------------PHRAPDGKV----LLRleVGGAGDPELWQLSDEELVALALADLRKLLGIDAepVDTRVVRWPKAYPQ 391

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516480620 472 YFEGTLDSYlgnafgpepQLVQSAFfrphnrsEDVRNLYLVGAGAQpGAGTPSVMMSAKMTARLIAE 538
Cdd:COG1232  392 YTVGHLERV---------AAIREAL-------AALPGLYLAGRAYD-GVGLPDCIRSGREAAERILA 441
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 14-53 5.28e-06

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 48.71  E-value: 5.28e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 516480620  14 TRRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGG 53
Cdd:COG2072    4 TEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG 43
PLN03000 PLN03000
amine oxidase
 16-77 1.32e-05

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 48.09  E-value: 1.32e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516480620  16 RKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTPDGYV---FDMGPTVITVPH 77
Cdd:PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVgaaADLGGSVLTGTL 248
PLN02529 PLN02529
lysine-specific histone demethylase 1
 3-77 8.06e-05

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 45.65  E-value: 8.06e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516480620   3 SPLPWPAPSPYTRRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTPDGYVF---DMGPTVITVPH 77
Cdd:PLN02529 147 SPSFASPIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFaavDLGGSVITGIH 224
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
262-318 9.51e-05

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 44.75  E-value: 9.51e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 516480620 262 GTGALVRGLVRkfgELGGTIRYGAGVKEIVVDGRlpgqrtARGVRLESGEELEADLV 318
Cdd:COG1251  185 EAGALLQRLLE---ALGVEVRLGTGVTEIEGDDR------VTGVRLADGEELPADLV 232
PLN02976 PLN02976
amine oxidase
 16-74 1.04e-04

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 45.24  E-value: 1.04e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 516480620   16 RKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTPDGYVFDMGPTVIT 74
Cdd:PLN02976  693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIIT 751
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 15-318 1.45e-04

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 44.46  E-value: 1.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  15 RRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTPD-GYVFDMGptvitvPHFIeelfalerdrahld 93
Cdd:COG3349    2 MPPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARSFPDPDtGLPIDNG------QHVL-------------- 61

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620  94 apdyppevlsgervrggVSGGPRTSEYVTLVPILPfyRIVFHDGTFFDYDGDPDSTRRQIAELAPqdlagyerFHaDAEA 173
Cdd:COG3349   62 -----------------LGCYRNTLDLLRRIGAAD--NLVGPEPLQFPLPGGRRWTLRAPRLPAP--------LH-LLRA 113

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 174 IFRRGFLELGyTHFGDVPTMLRVVPDLLKLDAVRTLFSFTSKYFQSDKMRQVFsFETLLVGGnpLNVP-----AIYAMIH 248
Cdd:COG3349  114 LLRAPGLSLA-DRLALLRLLTACRERRWRELDDISVADWLRRHGQSPRLIRRL-WEPLLLAA--LNTPpeqasARLALTV 189

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516480620 249 FVE------KTWGIHYALGGTGAL-VRGLVRKFGELGGTIRYGAGVKEIVVDGRLpgqrtARGVRLESGEELEADLV 318
Cdd:COG3349  190 LREtllagpAASDLLVPRGPLSELfVDPALAYLEARGGEVRLGTRVRALEFDGGR-----VTGLVLADGETVPADAV 261
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 6-53 4.05e-04

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 42.81  E-value: 4.05e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 516480620   6 PWPAPSPYTRRKTAlVVGSGFGGLALGIRLQSLGFDTTILERLDGPGG 53
Cdd:COG0493  112 KPPPPAPRTGKKVA-VVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 4-55 9.51e-04

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 42.14  E-value: 9.51e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 516480620   4 PLPWPAPSPYTRRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRA 55
Cdd:PRK01747 248 AAPWFARPGSPKARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 15-74 1.71e-03

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 41.13  E-value: 1.71e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 516480620  15 RRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRA-YQKRTPDGYV--FDMGPTVIT 74
Cdd:PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVkTMKMKGDGVVaaADLGGSVLT 299
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 17-70 2.45e-03

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 40.60  E-value: 2.45e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 516480620  17 KTALVVGSGFGGLALGIRLQSLG--FDTTILERLDGPGGRAYQKRtPDGYVFDMGP 70
Cdd:PRK11883   1 KKVAIIGGGITGLSAAYRLHKKGpdADITLLEASDRLGGKIQTVR-KDGFPIELGP 55
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 14-57 3.54e-03

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 39.54  E-value: 3.54e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 516480620  14 TRRKTALVVGSGFGGLALGIRLQSLGFDTTILERLDGP--GGRAYQ 57
Cdd:COG0654    1 MMRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPrpDGRGIA 46
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
255-352 5.18e-03

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 39.12  E-value: 5.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516480620 255 GIHYALGGT---GALVRGLVRKFGELGGTIRYGAGVKEIVVDGRLpgqrtARGVRLESGeELEAD--LVAsngdwANTYL 329
Cdd:COG0665  139 GLYDPDDGHvdpAKLVRALARAARAAGVRIREGTPVTGLEREGGR-----VTGVRTERG-TVRADavVLA-----AGAWS 207

                         90       100
                 ....*....|....*....|...
gi 516480620 330 KRVPARARLvnsDLRVRAARQSM 352
Cdd:COG0665  208 ARLLPMLGL---RLPLRPVRGYV 227
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 8-53 6.26e-03

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 39.01  E-value: 6.26e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 516480620   8 PAPSPYTRRKTAlVVGSGFGGLALGIRLQSLGFDTTILERLDGPGG 53
Cdd:PRK11749 133 FKRAPKTGKKVA-VIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
PLN02268 PLN02268
probable polyamine oxidase
 18-69 6.96e-03

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 38.90  E-value: 6.96e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 516480620  18 TALVVGSGFGGLALGIRLQSLGFDTTILERLDGPGGRAYQKRTpDGYVFDMG 69
Cdd:PLN02268   2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS-FGFPVDMG 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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