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Conserved domains on  [gi|516476370|ref|WP_017864814|]
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hypothetical protein [Lactococcus lactis]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DR0291 super family cl34310
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 36-167 7.58e-07

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


The actual alignment was detected with superfamily member COG1579:

Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 47.23  E-value: 7.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  36 EIQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLvqANVDKQNEIQA----------KINEIN 105
Cdd:COG1579   32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL--GNVRNNKEYEAlqkeieslkrRISDLE 109

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516476370 106 DKIAEGNQKVADKQKEVDAANQTIAQLNQQLNDLRQKSGQDNDQALREVQDTRAKSDQAVKD 167
Cdd:COG1579  110 DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
 
Name Accession Description Interval E-value
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 36-167 7.58e-07

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 47.23  E-value: 7.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  36 EIQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLvqANVDKQNEIQA----------KINEIN 105
Cdd:COG1579   32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL--GNVRNNKEYEAlqkeieslkrRISDLE 109

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516476370 106 DKIAEGNQKVADKQKEVDAANQTIAQLNQQLNDLRQKSGQDNDQALREVQDTRAKSDQAVKD 167
Cdd:COG1579  110 DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
PRK11281 PRK11281
mechanosensitive channel MscK;
37-169 1.79e-06

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.83  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370   37 IQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQ------VSALQAQLVQANvDKQNEIQAKINEINDKIAe 110
Cdd:PRK11281   75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETREtlstlsLRQLESRLAQTL-DQLQNAQNDLAEYNSQLV- 152

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  111 GNQKVADK-QKEVDAANQTIAQLNQQLNdlrqkSGQDNDQALREVQDTRAKSDQAVKDAQ 169
Cdd:PRK11281  153 SLQTQPERaQAALYANSQRLQQIRNLLK-----GGKVGGKALRPSQRVLLQAEQALLNAQ 207
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 35-140 6.46e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.05  E-value: 6.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370    35 GEIQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLVQANVDKQnEIQAKINEINDKIAEGNQK 114
Cdd:TIGR02168  295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESR 373

                           90       100
                   ....*....|....*....|....*.
gi 516476370   115 VADKQKEVDAANQTIAQLNQQLNDLR 140
Cdd:TIGR02168  374 LEELEEQLETLRSKVAQLELQIASLN 399
Sec5 pfam15469
Exocyst complex component Sec5; This entry represents the Sec5 component of the exocyst ...
 54-163 4.63e-05

Exocyst complex component Sec5; This entry represents the Sec5 component of the exocyst complex which is an octomeric complex that mediates the tethering of post-Golgi secretory vesicles to the plasma membrane during exocytosis.


Pssm-ID: 464733  Cd Length: 810  Bit Score: 42.74  E-value: 4.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370   54 KNQTISDLNNTIANLKSSVDSQTSQVSalqaQLVQANVDKQNEIQAKINEINDKIAEGNQKVADKQKEVDAanqtIAQLN 133
Cdd:pfam15469  46 NDTSFEDLKAGLDYLERSIESQSEELK----SLVKSNFDKFVNCKDTLDAIYQQFKEDKTEAQLAKENESG----TSKLE 117

                          90       100       110
                  ....*....|....*....|....*....|
gi 516476370  134 QQLNDLRQKSgqdnDQALREVQDTRAKSDQ 163
Cdd:pfam15469 118 ESLNEAIRKA----NLVFKPVLERKDKADK 143
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 41-163 5.52e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 36.15  E-value: 5.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370    41 NANIDTLSNRVKTKNQTISD----LNNTIANLKSSVDSQTSQVSALQAQLVQANVDKQNEIQAKINEINDKiaegNQKVA 116
Cdd:smart00787 160 YKLLMKELELLNSIKPKLRDrkdaLEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL----EEELQ 235

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 516476370   117 DKQKEVDAANQTIAQLNQQLNDLRQKSGQDNDQALREVQDTRAKSDQ 163
Cdd:smart00787 236 ELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKL 282
 
Name Accession Description Interval E-value
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 36-167 7.58e-07

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 47.23  E-value: 7.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  36 EIQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLvqANVDKQNEIQA----------KINEIN 105
Cdd:COG1579   32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL--GNVRNNKEYEAlqkeieslkrRISDLE 109

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516476370 106 DKIAEGNQKVADKQKEVDAANQTIAQLNQQLNDLRQKSGQDNDQALREVQDTRAKSDQAVKD 167
Cdd:COG1579  110 DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
PRK11281 PRK11281
mechanosensitive channel MscK;
37-169 1.79e-06

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.83  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370   37 IQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQ------VSALQAQLVQANvDKQNEIQAKINEINDKIAe 110
Cdd:PRK11281   75 IDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETREtlstlsLRQLESRLAQTL-DQLQNAQNDLAEYNSQLV- 152

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  111 GNQKVADK-QKEVDAANQTIAQLNQQLNdlrqkSGQDNDQALREVQDTRAKSDQAVKDAQ 169
Cdd:PRK11281  153 SLQTQPERaQAALYANSQRLQQIRNLLK-----GGKVGGKALRPSQRVLLQAEQALLNAQ 207
PRK09039 PRK09039
peptidoglycan -binding protein;
36-141 5.36e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 44.96  E-value: 5.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  36 EIQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLVQANvDKQNEIQAKINEINDKIAEGNQKV 115
Cdd:PRK09039  54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA-GAGAAAEGRAGELAQELDSEKQVS 132

                         90       100
                 ....*....|....*....|....*.
gi 516476370 116 ADKQKEVDAANQTIAQLNQQLNDLRQ 141
Cdd:PRK09039 133 ARALAQVELLNQQIAALRRQLAALEA 158
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 35-140 6.46e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.05  E-value: 6.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370    35 GEIQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLVQANVDKQnEIQAKINEINDKIAEGNQK 114
Cdd:TIGR02168  295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESR 373

                           90       100
                   ....*....|....*....|....*.
gi 516476370   115 VADKQKEVDAANQTIAQLNQQLNDLR 140
Cdd:TIGR02168  374 LEELEEQLETLRSKVAQLELQIASLN 399
PRK09039 PRK09039
peptidoglycan -binding protein;
47-169 1.20e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 44.19  E-value: 1.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  47 LSNRVKTKNQTISDLNNTIANL-------KSSVDSQTSQVSALQAQLVQANVDKQnEIQAKINEINDKIAEGNQKVADKQ 119
Cdd:PRK09039  44 LSREISGKDSALDRLNSQIAELadllsleRQGNQDLQDSVANLRASLSAAEAERS-RLQALLAELAGAGAAAEGRAGELA 122

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 516476370 120 KEVDAANQTIAQ-------LNQQLNDLRQKSGqdndqALREVQDTRAKSDQAvKDAQ 169
Cdd:PRK09039 123 QELDSEKQVSARalaqvelLNQQIAALRRQLA-----ALEAALDASEKRDRE-SQAK 173
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 60-169 1.30e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 1.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370    60 DLNNTIANLKSSVDSQTSQVSALQAQLvqanvdkqNEIQAKINEINDKIAEGNQKVADKQKEVDAANQTIAQLNQQLNDL 139
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTAEL--------QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307

                           90       100       110
                   ....*....|....*....|....*....|
gi 516476370   140 RQKSGQDNDQaLREVQDTRAKSDQAVKDAQ 169
Cdd:TIGR02168  308 RERLANLERQ-LEELEAQLEELESKLDELA 336
Sec5 pfam15469
Exocyst complex component Sec5; This entry represents the Sec5 component of the exocyst ...
 54-163 4.63e-05

Exocyst complex component Sec5; This entry represents the Sec5 component of the exocyst complex which is an octomeric complex that mediates the tethering of post-Golgi secretory vesicles to the plasma membrane during exocytosis.


Pssm-ID: 464733  Cd Length: 810  Bit Score: 42.74  E-value: 4.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370   54 KNQTISDLNNTIANLKSSVDSQTSQVSalqaQLVQANVDKQNEIQAKINEINDKIAEGNQKVADKQKEVDAanqtIAQLN 133
Cdd:pfam15469  46 NDTSFEDLKAGLDYLERSIESQSEELK----SLVKSNFDKFVNCKDTLDAIYQQFKEDKTEAQLAKENESG----TSKLE 117

                          90       100       110
                  ....*....|....*....|....*....|
gi 516476370  134 QQLNDLRQKSgqdnDQALREVQDTRAKSDQ 163
Cdd:pfam15469 118 ESLNEAIRKA----NLVFKPVLERKDKADK 143
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 42-169 7.77e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 7.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  42 ANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLVQANvDKQNEIQAKINEINDKIAEGNQKVADKQKE 121
Cdd:COG1196  232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-LELEEAQAEEYELLAELARLEQDIARLEER 310

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 516476370 122 VDAANQTIAQLNQQLNDLRQKSGQDNDQaLREVQDTRAKSDQAVKDAQ 169
Cdd:COG1196  311 RRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAE 357
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
44-169 3.68e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 3.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370   44 IDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQ--AQLVQANVDKQnEIQAKINEINDKIAEgnqkvadkqke 121
Cdd:COG4913   612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVA-SAEREIAELEAELER----------- 679

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 516476370  122 VDAANQTIAQLNQQLNDLRQKsGQDNDQALREVQDTRAKSDQAVKDAQ 169
Cdd:COG4913   680 LDASSDDLAALEEQLEELEAE-LEELEEELDELKGEIGRLEKELEQAE 726
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 36-160 3.73e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 3.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370    36 EIQTINANIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLVQaNVDKQNEIQAKINEINDKIAEGNQKV 115
Cdd:TIGR02168  275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE-LESKLDELAEELAELEEKLEELKEEL 353

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 516476370   116 ADKQKEVDAANQTIAQLNQQLNDLRQKSGQDND---QALREVQDTRAK 160
Cdd:TIGR02168  354 ESLEAELEELEAELEELESRLEELEEQLETLRSkvaQLELQIASLNNE 401
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 48-142 4.61e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.36  E-value: 4.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  48 SNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLvqanvdkqNEIQAKINEINDKIAEGNQKVADKQKEVDAANQ 127
Cdd:COG4942   19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL--------AALERRIAALARRIRALEQELAALEAELAELEK 90

                         90
                 ....*....|....*
gi 516476370 128 TIAQLNQQLNDLRQK 142
Cdd:COG4942   91 EIAELRAELEAQKEE 105
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
43-169 1.05e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 38.46  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  43 NIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLVQANVDKQNEIQ-AKINEINDKIAEGNQKVADKQKE 121
Cdd:COG3206  206 GLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQsPVIQQLRAQLAELEAELAELSAR 285

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 516476370 122 VDAANQTIAQLNQQLNDLRQKSGQDNDQALREVQDTRAKSDQAVKDAQ 169
Cdd:COG3206  286 YTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQ 333
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
36-169 2.47e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 37.44  E-value: 2.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370  36 EIQTINANIDTLSNRVKTKNQTISDLNNTIANLkssvdSQTSQVSALQAQLvqanvdkqNEIQAKINEINDKIAEgnqkV 115
Cdd:COG4717   96 ELEELEEELEELEAELEELREELEKLEKLLQLL-----PLYQELEALEAEL--------AELPERLEELEERLEE----L 158

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 516476370 116 ADKQKEVDAANQTIAQLNQQLNDLRQKSGQDNDQALREVQDTRAKSDQAVKDAQ 169
Cdd:COG4717  159 RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 79-142 4.37e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 36.67  E-value: 4.37e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 516476370  79 VSALQAQLVQANVDKQNEIQAKINEINDKIAEGNQKVADKQKEVDAANQTIAQLNQQLNDLRQK 142
Cdd:COG4942   14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE 77
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 41-163 5.52e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 36.15  E-value: 5.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370    41 NANIDTLSNRVKTKNQTISD----LNNTIANLKSSVDSQTSQVSALQAQLVQANVDKQNEIQAKINEINDKiaegNQKVA 116
Cdd:smart00787 160 YKLLMKELELLNSIKPKLRDrkdaLEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL----EEELQ 235

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 516476370   117 DKQKEVDAANQTIAQLNQQLNDLRQKSGQDNDQALREVQDTRAKSDQ 163
Cdd:smart00787 236 ELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKL 282
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 43-142 6.35e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 36.15  E-value: 6.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370   43 NIDTLSNRVKTKNQTISDLNNTIANLKSSVDSQTSQVSALQAQLvqanvdkqNEIQAKINEINDKIAEGNQKVADKQKEV 122
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI--------SNTQTQLNQLKDEQNKIKKQLSEKQKEL 276

                          90       100
                  ....*....|....*....|
gi 516476370  123 DAANQTIAQLNQQLNDLRQK 142
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSE 296
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
34-169 6.92e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 36.05  E-value: 6.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516476370   34 HGEIQTINANIDTLsnrvktknQTISDLNNTIANLKSSVDSQTSQVSALQAQLVQAnvdKQNEIQAKINEINDKIAEGNQ 113
Cdd:COG4913   241 HEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRLWFAQR---RLELLEAELEELRAELARLEA 309

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 516476370  114 KVADKQKEVDAANQTIAQLNQQlndLRQKSGQDNDQALREVQDTRAKSDQAVKDAQ 169
Cdd:COG4913   310 ELERLEARLDALREELDELEAQ---IRGNGGDRLEQLEREIERLERELEERERRRA 362
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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