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Conserved domains on  [gi|516448161|ref|WP_017837073|]
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F0F1 ATP synthase subunit A [Dietzia sp. UCD-THP]

Protein Classification

FoF1 ATP synthase subunit a( domain architecture ID 10012597)

FoF1 ATP synthase subunit a is part of the membrane proton channel of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane; it plays a direct role in the translocation of protons across the membrane

Gene Ontology:  GO:0045263|GO:0046933|GO:0005886
PubMed:  28001127

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 4-239 7.63e-50

F0F1 ATP synthase subunit A; Validated


:

Pssm-ID: 235617  Cd Length: 227  Bit Score: 162.66  E-value: 7.63e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   4 FAGDAFVLDRLMIIRLLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILGKeqGRRFLPVIATIFFAVF 83
Cdd:PRK05815   7 IGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGK--GKKFAPLAFTLFLFIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  84 AMNLPTIIPGLNISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASVVIPglppalHILVVPIELVStFILRPATL 163
Cdd:PRK05815  85 LMNLLGLIPYLLFPPTADINVTLALALIVFVLVIYYGIKKKGLGGYLKEFYLQP------HPLLLPIEIIS-EFSRPISL 157

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516448161 164 TIRLMANMLAGHLIIVLLFSATNFFFWqlngwslLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYIDLALHAE 239
Cdd:PRK05815 158 SLRLFGNMLAGELILALIALLGGAGLL-------LALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
 
Name Accession Description Interval E-value
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 4-239 7.63e-50

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 162.66  E-value: 7.63e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   4 FAGDAFVLDRLMIIRLLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILGKeqGRRFLPVIATIFFAVF 83
Cdd:PRK05815   7 IGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGK--GKKFAPLAFTLFLFIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  84 AMNLPTIIPGLNISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASVVIPglppalHILVVPIELVStFILRPATL 163
Cdd:PRK05815  85 LMNLLGLIPYLLFPPTADINVTLALALIVFVLVIYYGIKKKGLGGYLKEFYLQP------HPLLLPIEIIS-EFSRPISL 157

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516448161 164 TIRLMANMLAGHLIIVLLFSATNFFFWqlngwslLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYIDLALHAE 239
Cdd:PRK05815 158 SLRLFGNMLAGELILALIALLGGAGLL-------LALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 15-237 1.89e-49

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 161.01  E-value: 1.89e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  15 MIIRLLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILGKeqGRRFLPVIATIFFAVFAMNLPTIIPGL 94
Cdd:COG0356    3 VLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKK--GRKFAPLLLTLFLFILVSNLLGLIPGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  95 nISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASVVIPGlpPALHILVVPIELVStFILRPATLTIRLMANMLAG 174
Cdd:COG0356   81 -FPPTADINVTLALALIVFVLVHYYGIKKKGLGGYLKHLFFPPF--PWLAPLMLPIEIIS-ELARPLSLSLRLFGNMFAG 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 516448161 175 HLIIVLLFSATNFFFWQLNGWsllavgtsLLSVAFTLFKLLVLFLQAYIFALLVSVYIDLALH 237
Cdd:COG0356  157 HIILLLLAGLAPFLLLGVLSL--------LLPVAWTAFELLVGFLQAYIFTMLTAVYISLAVE 211
ATP-synt_A pfam00119
ATP synthase A chain;
15-232 4.92e-46

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 152.64  E-value: 4.92e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   15 MIIRLLMTVVLLGFFVIAMRN-PKLVPRGVQNFAEICLDFVRvHIAEEILGKEQGRRFLPVIATIFFAVFAMNLPTIIPG 93
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKtKKLVPGRLQNFVEMLVEFVD-NIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIPK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   94 --LNISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASVViPGLPPALHILVVPIELVSTFIlRPATLTIRLMANM 171
Cdd:pfam00119  80 spGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGYFKKLFV-PPVPLPLVPLLLPIEIISEFA-RPVSLSLRLFGNM 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 516448161  172 LAGHLIIVLLFSATNFFFWQlngWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYI 232
Cdd:pfam00119 158 LAGHLLLLLLAGLIFALLSA---GFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYI 215
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 68-232 1.09e-30

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 110.95  E-value: 1.09e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  68 GRRFLPVIATIFFAVFAMNLPTIIPGLnISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKAsvVIPGLPPALHILV 147
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYS-FTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHF--LPPGTPLPLAPLM 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 148 VPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATNFFFwqlngwSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALL 227
Cdd:cd00310   78 VPIELISELI-RPLSLSVRLFANMFAGHLLLALLSGLVPSLL------SSVGLLPLLLPVALTLLELFVAFIQAYVFTLL 150


                 ....*
gi 516448161 228 VSVYI 232
Cdd:cd00310  151 TAVYI 155
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-233 8.46e-21

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 87.26  E-value: 8.46e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   19 LLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILGKEQGrrFLPVIATIFFAVFAMNLPTIIPGLnISP 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGK--FFPLIFTLFLFILISNLLGLIPYS-FTP 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   99 NARIGFPLMLAVLGYVTFIYAGsKRYGFAKFiKASVVIPGLPPALHILVVPIELVSTFIlRPATLTIRLMANMLAGHLII 178
Cdd:TIGR01131  97 TSHLSFTLGLALPLWLGLTISG-FRKHPKGF-LAHLVPSGTPLPLIPFLVIIETISYLA-RPISLSVRLFANISAGHLLL 173

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 516448161  179 VLLFSATNFFFwqlngWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYID 233
Cdd:TIGR01131 174 TLLSGLLFSLM-----SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLN 223
 
Name Accession Description Interval E-value
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 4-239 7.63e-50

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 162.66  E-value: 7.63e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   4 FAGDAFVLDRLMIIRLLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILGKeqGRRFLPVIATIFFAVF 83
Cdd:PRK05815   7 IGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGK--GKKFAPLAFTLFLFIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  84 AMNLPTIIPGLNISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASVVIPglppalHILVVPIELVStFILRPATL 163
Cdd:PRK05815  85 LMNLLGLIPYLLFPPTADINVTLALALIVFVLVIYYGIKKKGLGGYLKEFYLQP------HPLLLPIEIIS-EFSRPISL 157

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516448161 164 TIRLMANMLAGHLIIVLLFSATNFFFWqlngwslLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYIDLALHAE 239
Cdd:PRK05815 158 SLRLFGNMLAGELILALIALLGGAGLL-------LALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 15-237 1.89e-49

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 161.01  E-value: 1.89e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  15 MIIRLLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILGKeqGRRFLPVIATIFFAVFAMNLPTIIPGL 94
Cdd:COG0356    3 VLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKK--GRKFAPLLLTLFLFILVSNLLGLIPGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  95 nISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASVVIPGlpPALHILVVPIELVStFILRPATLTIRLMANMLAG 174
Cdd:COG0356   81 -FPPTADINVTLALALIVFVLVHYYGIKKKGLGGYLKHLFFPPF--PWLAPLMLPIEIIS-ELARPLSLSLRLFGNMFAG 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 516448161 175 HLIIVLLFSATNFFFWQLNGWsllavgtsLLSVAFTLFKLLVLFLQAYIFALLVSVYIDLALH 237
Cdd:COG0356  157 HIILLLLAGLAPFLLLGVLSL--------LLPVAWTAFELLVGFLQAYIFTMLTAVYISLAVE 211
ATP-synt_A pfam00119
ATP synthase A chain;
15-232 4.92e-46

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 152.64  E-value: 4.92e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   15 MIIRLLMTVVLLGFFVIAMRN-PKLVPRGVQNFAEICLDFVRvHIAEEILGKEQGRRFLPVIATIFFAVFAMNLPTIIPG 93
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKtKKLVPGRLQNFVEMLVEFVD-NIVKDNIGKKKGRKFFPLLLTLFFFILVSNLLGLIPK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   94 --LNISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASVViPGLPPALHILVVPIELVSTFIlRPATLTIRLMANM 171
Cdd:pfam00119  80 spGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGYFKKLFV-PPVPLPLVPLLLPIEIISEFA-RPVSLSLRLFGNM 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 516448161  172 LAGHLIIVLLFSATNFFFWQlngWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYI 232
Cdd:pfam00119 158 LAGHLLLLLLAGLIFALLSA---GFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYI 215
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 68-232 1.09e-30

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 110.95  E-value: 1.09e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  68 GRRFLPVIATIFFAVFAMNLPTIIPGLnISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKAsvVIPGLPPALHILV 147
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYS-FTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHF--LPPGTPLPLAPLM 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 148 VPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATNFFFwqlngwSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALL 227
Cdd:cd00310   78 VPIELISELI-RPLSLSVRLFANMFAGHLLLALLSGLVPSLL------SSVGLLPLLLPVALTLLELFVAFIQAYVFTLL 150


                 ....*
gi 516448161 228 VSVYI 232
Cdd:cd00310  151 TAVYI 155
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 36-241 1.21e-25

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 102.51  E-value: 1.21e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  36 PKLVPRGVQNFAEICLDFVRVHIAEEILGKEQgRRFLPVIATIFFAVFAMNLPTIIPgLNISPNARIGFPLMLAVLGYVT 115
Cdd:PRK13419 136 KSQAPKGLANAMEALVEFIRLDVAKSNIGHGY-EKFLPYLLTVFFFILVCNLLGLVP-YGATATGNINVTLTLAVFTFFI 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 116 FIYAGSKRYGFAKFIKAsvVIPGLPPALHILVVPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFsatnFFFWQLNGW 195
Cdd:PRK13419 214 TQYAAIKAHGIKGYLAH--LTGGTHWSLWIIMIPIEFIGLFT-KPFALTVRLFANMTAGHIVILSLI----FISFILKSY 286

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 516448161 196 SLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYIDLALHAESH 241
Cdd:PRK13419 287 IVAVAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFIGLATAHEGH 332
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-233 8.46e-21

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 87.26  E-value: 8.46e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   19 LLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILGKEQGrrFLPVIATIFFAVFAMNLPTIIPGLnISP 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGK--FFPLIFTLFLFILISNLLGLIPYS-FTP 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161   99 NARIGFPLMLAVLGYVTFIYAGsKRYGFAKFiKASVVIPGLPPALHILVVPIELVSTFIlRPATLTIRLMANMLAGHLII 178
Cdd:TIGR01131  97 TSHLSFTLGLALPLWLGLTISG-FRKHPKGF-LAHLVPSGTPLPLIPFLVIIETISYLA-RPISLSVRLFANISAGHLLL 173

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 516448161  179 VLLFSATNFFFwqlngWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYID 233
Cdd:TIGR01131 174 TLLSGLLFSLM-----SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLN 223
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 16-237 5.85e-15

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 73.00  E-value: 5.85e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  16 IIRLLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEILgKEQGRRFLPVIATIFFAVFAMNLPTIIPGLN 95
Cdd:PRK13417 103 IVAFFLFLIFIPAANIIAKNPLKVQSRFANTVEVFVNFLRKDIVDESM-HGHGHSYYHYIFTLFFFILFCNLMGLVPSVG 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  96 ----------------------------------ISPNARIGFPLMLAVLGYVTfIYAGSKRYGFAKFIkASVVIPGLPP 141
Cdd:PRK13417 182 eltvvasdygglvalgvmdhtphalptfakvwsgITVTGDISVTMTLALLTMFL-IYGAGFSYQGPKFI-WHSVPNGVPL 259

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 142 ALHILVVPIELVSTFILRPATLTIRLMANMLAGHLIIVLLFSatnfFFWQLNGWSLLAVgTSLLSVAFTLFKLLVLFLQA 221
Cdd:PRK13417 260 LLYPIMWPLEFIVSPMAKTFALTVRLLANMTAGHVIILALMG----FIFQFQSWGIVPV-SVIGSGLIYVLEIFVAFLQA 334

                        250
                 ....*....|....*.
gi 516448161 222 YIFALLVSVYIDLALH 237
Cdd:PRK13417 335 YIFVLLTSLFVGLSMH 350
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 74-233 1.28e-13

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 67.58  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  74 VIATIFFAVFAMNLPTIIP-GLNISPNARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIkasvVIPGLPPALHILVVPIEL 152
Cdd:MTH00173  74 LLSSLFLFLISLNLSGLLPfVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGL----VPAGAPAGLNPFLVLIET 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 153 VSTFIlRPATLTIRLMANMLAGHLIIVLLFSATNFFFWqlNGWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYI 232
Cdd:MTH00173 150 VSILI-RPLTLTVRLLANISAGHIVLTLIGNYLSSSLF--SSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYS 226


                 .
gi 516448161 233 D 233
Cdd:MTH00173 227 D 227
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 138-232 1.05e-12

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 65.19  E-value: 1.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 138 GLPPALHILVVPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATNFFFWQLNGWSLLAvgtsllSVAFTLFKLLVL 217
Cdd:MTH00157 132 GTPPILMPFMVLIETISNLI-RPGTLAVRLAANMIAGHLLLTLLGNTGPSLSSMILSILILI------QILLLILESAVA 204

                         90
                 ....*....|....*
gi 516448161 218 FLQAYIFALLVSVYI 232
Cdd:MTH00157 205 IIQSYVFSVLSTLYS 219
atpI CHL00046
ATP synthase CF0 A subunit
 15-183 1.49e-12

ATP synthase CF0 A subunit


Pssm-ID: 176987  Cd Length: 228  Bit Score: 64.57  E-value: 1.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  15 MIIRLLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRvHIAEEILGKEQGRRFLPVIATIFFAVFAMN-LPTIIP- 92
Cdd:CHL00046  26 LITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIR-DLAKTQIGEEEYRPWVPFIGTMFLFIFVSNwSGALLPw 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  93 GLNISPNARIGFP-------LMLAVLGYVTFIYAGSKRYG---FAKFIKASVVIpglppalhilvVPIELVSTFIlRPAT 162
Cdd:CHL00046 105 KLIELPHGELAAPtndinttVALALLTSVAYFYAGLSKKGlgyFGKYIQPTPIL-----------LPINILEDFT-KPLS 172

                        170       180
                 ....*....|....*....|.
gi 516448161 163 LTIRLMANMLAGHLIIVLLFS 183
Cdd:CHL00046 173 LSFRLFGNILADELVVAVLVS 193
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 71-233 2.31e-12

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 64.37  E-value: 2.31e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  71 FLPVIATIFFAVFAMNLPTIIPGLnISPNARIGFPLMLAVLGYVTFIYAgSKRYGFAKFIkASVVIPGLPPALHILVVPI 150
Cdd:MTH00005  73 FSSLISALFTMIILMNLSGLLPYV-FSTSSHLIFTLTLGLPLWLSLIMS-SVTFSPKKFA-AHLLPGGAPDWLNPFLVLI 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 151 ELVSTFIlRPATLTIRLMANMLAGHLIIVLL--FSATNFFFWQLNGWSLLavgtsLLSVAFTLFKLLVLFLQAYIFALLV 228
Cdd:MTH00005 150 ETISILV-RPITLSFRLAANMSAGHIVLSLIgiYAASALFSSISSTILLI-----LTQMGYILFEVGICLIQAYIFCLLL 223


                 ....*
gi 516448161 229 SVYID 233
Cdd:MTH00005 224 SLYSD 228
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 71-233 1.10e-11

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 62.36  E-value: 1.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  71 FLPVIATIFFAVFAMNLPTIIPGLnISPNARIGFPLMLAVLGYVTFIYAGSkRYGFAKFIkASVVIPGLPPALHILVVPI 150
Cdd:MTH00176  71 SASIIISLFILVMSLNLSGLIPYV-FTSTSHLVITLSLALPLWLGVILSGF-INNFYSRL-SHLVPQGTPPLLNPFLVLI 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 151 ELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSAtnfFFWQLNGWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSV 230
Cdd:MTH00176 148 ELVSLLI-RPLTLAVRLAANLSAGHLLLGLLGAA---MWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSL 223


                 ...
gi 516448161 231 YID 233
Cdd:MTH00176 224 YLD 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 67-233 6.19e-11

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 60.35  E-value: 6.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  67 QGRRFLPVIATIFFAVFAMNLPTIIPGlNISPNARIGFPLMLAVlgyvtFIYAGSKRYGFAKFIKASV--VIP-GLPPAL 143
Cdd:MTH00179  65 KGHKWAVLFLSLMLFLLTLNLLGLLPY-TFTPTTQLSLNLGLAL-----PLWLGTVLYGLFNQPTIALahLLPeGTPTPL 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 144 HILVVPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSAtnfFFWQLNGWSLLAVGTSLLSVAFTLFKLLVLFLQAYI 223
Cdd:MTH00179 139 IPMLVWIETISLLI-RPLALGVRLTANITAGHLLMHLISSA---VFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYV 214

                        170
                 ....*....|
gi 516448161 224 FALLVSVYID 233
Cdd:MTH00179 215 FVLLLSLYLQ 224
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 20-232 1.24e-10

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 59.28  E-value: 1.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  20 LMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVhIAEEILGKEqGRRFLPVIATIFFAVFAMNLPTIIPGLnISPN 99
Cdd:MTH00172  22 IMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHG-VVKDNLGNE-GLKYFPFIISLFFFIVFLNLLGLFPYV-FTPT 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 100 ARIgfplmLAVLGYVTFIYAGSKRYGFAKFIK--ASVVIP-GLPPALHILVVPIELVStFILRPATLTIRLMANMLAGHL 176
Cdd:MTH00172  99 THI-----VVTLGLSFSIIIGVTLAGFWRFKWdfFSILMPsGAPLGLAPLLVLIETVS-YISRAISLGVRLAANLSAGHL 172

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 516448161 177 IIVLLFSatnFFFWQLNGWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYI 232
Cdd:MTH00172 173 LFAILAG---FGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYL 225
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 111-232 3.37e-09

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 55.34  E-value: 3.37e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 111 LGYVTFIYAGSKRYGFAKFIKASVV--IP-GLPPALHILVVPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATnf 187
Cdd:MTH00101 102 LGMAIPLWAGTVITGFRNKTKASLAhfLPqGTPTPLIPMLVIIETISLFI-QPMALAVRLTANITAGHLLIHLIGGAT-- 178

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 516448161 188 ffwqlngWSLLAVGTSLLSVAFTLFKLL------VLFLQAYIFALLVSVYI 232
Cdd:MTH00101 179 -------LALMSISTTTALITFIILILLtilefaVALIQAYVFTLLVSLYL 222
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 138-231 4.66e-09

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 54.88  E-value: 4.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 138 GLPPALHILVVPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATnffFWQLNGWSLLAVGTSLLSVAFTLFKLLVL 217
Cdd:MTH00132 133 GTPTPLIPVLIIIETISLFI-RPLALGVRLTANLTAGHLLIQLIATAA---FVLLPLMPTVAILTATLLFLLTLLEVAVA 208

                         90
                 ....*....|....
gi 516448161 218 FLQAYIFALLVSVY 231
Cdd:MTH00132 209 MIQAYVFVLLLSLY 222
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 73-233 1.64e-08

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 53.44  E-value: 1.64e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  73 PVIATIFFAVFAMNLPTIIPGL-----NISPNARIGFPLMLAV--LGyvtFIYAGSKRYgfakfikASVVIPGLPPALHI 145
Cdd:MTH00035  74 GLLTTVFILILSINVLGLFPYAftstsHISLTYSLGIPLWMSVniLG---FYLAFNSRL-------SHLVPQGTPSFLIP 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 146 LVVPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATnfffWQLNGWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFA 225
Cdd:MTH00035 144 LMVWIETLSLFA-QPIALGLRLAANLTAGHLLIFLLSTAI----WELSNSPLISIITLIIFFLLFILEIGVACIQAYVFT 218


                 ....*...
gi 516448161 226 LLVSVYID 233
Cdd:MTH00035 219 ALVHFYLE 226
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 20-232 3.32e-08

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 52.70  E-value: 3.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  20 LMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEiLGKeQGRRFLPVIATIFFAVFAMNLPTIIPGLnISPN 99
Cdd:MTH00175  33 MMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDN-LGK-SGQKYFPFILSLFLFIAILNILGLFPYV-FTPT 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 100 ARIG--FPLMLAVLGYVTFIYAGSKRYGFAkfikaSVVIP-GLPPALHILVVPIELVStFILRPATLTIRLMANMLAGHL 176
Cdd:MTH00175 110 AHIIitFGLSLSIIIAVTLLGFLTFKWNFL-----SILMPgGAPLVLAPFLVLIETLS-YLIRAISLGVRLAANISAGHL 183

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 516448161 177 IIVLLFSATnfFFWQLNGWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYI 232
Cdd:MTH00175 184 LFAILSGFA--FNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 150-231 3.68e-08

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 52.13  E-value: 3.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 150 IELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATNFFfwqLNGWSLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVS 229
Cdd:MTH00120 145 IETISLLI-RPLALGVRLTANLTAGHLLIQLISTATLNL---LPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLS 220


                 ..
gi 516448161 230 VY 231
Cdd:MTH00120 221 LY 222
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 20-236 2.41e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 50.08  E-value: 2.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  20 LMTVVLLGFfVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEIlgKEQGRRFLPVIATIFFAVFAMNLPTIIPGLNiSPN 99
Cdd:PRK13421  29 IMAVLAAGS-ALATRRLSLAPGRLQSVLELVVTTIDAQIRDTM--QTDPAPYRALIGTLFLFVLVANWSSLVPGVE-PPT 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 100 ARIGFPLMLAVLGYVTFIYAGSKRYG----FAKFIKASVVIpglppalhilvVPIELVSTfILRPATLTIRLMANMLAGH 175
Cdd:PRK13421 105 AHLETDAALALIVFLATIYYGVRARGvrgyLATFAEPTWVM-----------IPLNLVEQ-LTRTFSLIVRLFGNVMSGV 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 516448161 176 LIIVLlfsatnfffwqlngwsLLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYIDLAL 236
Cdd:PRK13421 173 FVIGI----------------VLSLAGLLVPIPLMALDLLTGAVQAYIFAVLAMVFIGAAV 217
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 138-232 4.86e-07

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 49.19  E-value: 4.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 138 GLPPALHILVVPIELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATNFFFWQLNGWSLLAVGTSLLsvaFTLFKLLVL 217
Cdd:MTH00073 133 GTPTLLIPILIIIETISLFI-RPLALGVRLTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFL---LTLLEIAVA 208

                         90
                 ....*....|....*
gi 516448161 218 FLQAYIFALLVSVYI 232
Cdd:MTH00073 209 MIQAYVFVLLLSLYL 223
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 151-231 5.51e-06

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 45.74  E-value: 5.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161 151 ELVSTFIlRPATLTIRLMANMLAGHLIIVLLFSATNFFFWqlngwsllavgtslLSVAFTLFKLLVLFLQAYIFALLVSV 230
Cdd:MTH00087 127 EIVSELS-RPLALTLRLTVNLMVGHLISSLLNFLGEKYVW--------------LSILAIMMECFVAFIQSYIFSRLIYL 191


                 .
gi 516448161 231 Y 231
Cdd:MTH00087 192 Y 192
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 19-232 4.91e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 43.19  E-value: 4.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  19 LLMTVVLLGFFVIAMRNPKLVPRGVQNFAEICLDFVRVHIAEEIlgKEQGRRFLPVIATIFFAVFAMNLPTIIPGLNiSP 98
Cdd:PRK13420  24 WGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVL--PRHARLVLPFVGTLWIFILVANLIGLIPGFH-SP 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516448161  99 NARIGFPLMLAVLGYVTFIYAGSKRYGFAKFIKASvvipgLPPALHILvvPIELVSTfILRPATLTIRLMANMLAGHLII 178
Cdd:PRK13420 101 TADLSVTAALALLVFFSVHWFGIRAEGLREYLKHY-----LSPSPFLL--PFHLISE-ITRTLALAVRLFGNIMSLELAA 172

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 516448161 179 VLLfsatnfffwqlngwslLAVGTSLLSVAFTLFKLLVLFLQAYIFALLVSVYI 232
Cdd:PRK13420 173 LLV----------------LLVAGFLVPVPILMLHIIEALVQAYIFGMLALIYI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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