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Conserved domains on  [gi|516417033|ref|WP_017806431|]
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PTS sugar transporter subunit IIA [Avibacterium paragallinarum]

Protein Classification

PTS sugar transporter subunit IIA( domain architecture ID 76)

PTS sugar transporter subunit IIA is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active transport system that catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane

CATH:  3.40.930.10
Gene Ontology:  GO:1902495|GO:0009401|GO:0016310|GO:0016301|GO:0008643
PubMed:  11532441|10393270
SCOP:  4001876

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTS_IIA_fru super family cl00163
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 2-154 2.05e-55

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


The actual alignment was detected with superfamily member PRK10372:

Pssm-ID: 469635 [Multi-domain]  Cd Length: 154  Bit Score: 171.31  E-value: 2.05e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   2 LKESLIENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYIILAPGLAMPHARPEEGVNRTAFAL 81
Cdd:PRK10372   3 LRDSLAENKSIRLQAEAETWQEAVKIGVDLLVAADVVEPRYYQAILDGVEQFGPYFVIAPGLAMPHGRPEEGVKKTGFAL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516417033  82 VTLTTPVAFESEE-EPVSVLITLAGSDSDQHMQ-GIMEITQVLEDSdpnsltgVDLEKIRRCQSAEEIYAVIDAA 154
Cdd:PRK10372  83 VTLKKPLEFNHEDnDPVDILITMAAVDANTHQEvGIMQIVNLFEDE-------ANFDRLRACRTEQEVLDLIDRT 150
 
Name Accession Description Interval E-value
PRK10372 PRK10372
PTS ascorbate transporter subunit IIA;
2-154 2.05e-55

PTS ascorbate transporter subunit IIA;


Pssm-ID: 182417 [Multi-domain]  Cd Length: 154  Bit Score: 171.31  E-value: 2.05e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   2 LKESLIENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYIILAPGLAMPHARPEEGVNRTAFAL 81
Cdd:PRK10372   3 LRDSLAENKSIRLQAEAETWQEAVKIGVDLLVAADVVEPRYYQAILDGVEQFGPYFVIAPGLAMPHGRPEEGVKKTGFAL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516417033  82 VTLTTPVAFESEE-EPVSVLITLAGSDSDQHMQ-GIMEITQVLEDSdpnsltgVDLEKIRRCQSAEEIYAVIDAA 154
Cdd:PRK10372  83 VTLKKPLEFNHEDnDPVDILITMAAVDANTHQEvGIMQIVNLFEDE-------ANFDRLRACRTEQEVLDLIDRT 150
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 7-151 7.75e-37

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 123.44  E-value: 7.75e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   7 IENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKeMGPYIILaPGLAMPHARPEEgVNRTAFALVTLTT 86
Cdd:cd00211    1 LTKENIRLNLKAKSKEEAIEELAQLLVAAGYVEEEYIEALLEREK-EGSTGIG-NGIAIPHAKSEA-VKKPGIAVLRLKE 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516417033  87 PVAFESEE-EPVSVLITLAGSDSDQHMQGIMEITQVLEDSDPnsltgvdLEKIRRCQSAEEIYAVI 151
Cdd:cd00211   78 PVDFGSLDgQPVHLIFLLAAPDSNEHLKALSQLARLLSDEEF-------VEQLLNAQSKEEILALL 136
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 1-155 3.55e-36

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 122.27  E-value: 3.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   1 MLKESLIENRSVKLNQTAQNWEEAIKIGTDMLVESGAI--EPRYYDAIVSMVKEMGPYIilAPGLAMPHARPeEGVNRTA 78
Cdd:COG1762    1 MMLSDLLTPELILLDLEASSKEEAIEELAELLAEKGYVldKEEYLEALLEREELGSTGI--GPGIAIPHARP-EGVKKPG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033  79 FALVTLTTPVAFESEE-EPVSVLITLAG--SDSDQHMQGIMEITQVLEDSDpnsltgvDLEKIRRCQSAEEIYAVIDAAL 155
Cdd:COG1762   78 IAVARLKEPVDFGAMDgEPVDLVFLLAApeDDSEEHLKLLAELARLLSDEE-------FREKLLNAKSPEEILELLKEAE 150
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
6-151 1.11e-35

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 120.39  E-value: 1.11e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033    6 LIENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYIILapGLAMPHARPeEGVNRTAFALVTLT 85
Cdd:pfam00359   1 LLDKELIFLNLEAKSKEEAIEFLADKLVEAGYVEPAYLEAILEREKEGSTGIGN--GIAIPHARS-EAVKKPGIAVLTLK 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516417033   86 TPVAFESEE-EPVSVLITLAGSDSDQ-HMQGIMEITQVLEDSDpnsltgvDLEKIRRCQSAEEIYAVI 151
Cdd:pfam00359  78 EPVDFGSEDgKPVKLIFLLAAPDNEAsHLKILSQLARLLQDEE-------FVEKLLKAKDPEEILEIL 138
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 62-152 1.44e-08

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 50.49  E-value: 1.44e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   62 GLAMPHARpEEGVNRTAFALVTLTTPVAFES-EEEPVSVLITLAGSD--SDQHMQGIMEITQVLEDSdpnsltgvDLEKI 138
Cdd:TIGR01419  60 GIAIPHGR-LSGLKQPVGVFIRLDAPVDFDAlDGKPVDLLFALLVPEnaTAEHLEALSRIARKLSDK--------TICRR 130

                          90
                  ....*....|....
gi 516417033  139 RRCQSAEEIYAVID 152
Cdd:TIGR01419 131 LRAASAEEIYQILT 144
 
Name Accession Description Interval E-value
PRK10372 PRK10372
PTS ascorbate transporter subunit IIA;
2-154 2.05e-55

PTS ascorbate transporter subunit IIA;


Pssm-ID: 182417 [Multi-domain]  Cd Length: 154  Bit Score: 171.31  E-value: 2.05e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   2 LKESLIENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYIILAPGLAMPHARPEEGVNRTAFAL 81
Cdd:PRK10372   3 LRDSLAENKSIRLQAEAETWQEAVKIGVDLLVAADVVEPRYYQAILDGVEQFGPYFVIAPGLAMPHGRPEEGVKKTGFAL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 516417033  82 VTLTTPVAFESEE-EPVSVLITLAGSDSDQHMQ-GIMEITQVLEDSdpnsltgVDLEKIRRCQSAEEIYAVIDAA 154
Cdd:PRK10372  83 VTLKKPLEFNHEDnDPVDILITMAAVDANTHQEvGIMQIVNLFEDE-------ANFDRLRACRTEQEVLDLIDRT 150
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 7-151 7.75e-37

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 123.44  E-value: 7.75e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   7 IENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKeMGPYIILaPGLAMPHARPEEgVNRTAFALVTLTT 86
Cdd:cd00211    1 LTKENIRLNLKAKSKEEAIEELAQLLVAAGYVEEEYIEALLEREK-EGSTGIG-NGIAIPHAKSEA-VKKPGIAVLRLKE 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 516417033  87 PVAFESEE-EPVSVLITLAGSDSDQHMQGIMEITQVLEDSDPnsltgvdLEKIRRCQSAEEIYAVI 151
Cdd:cd00211   78 PVDFGSLDgQPVHLIFLLAAPDSNEHLKALSQLARLLSDEEF-------VEQLLNAQSKEEILALL 136
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 1-155 3.55e-36

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 122.27  E-value: 3.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   1 MLKESLIENRSVKLNQTAQNWEEAIKIGTDMLVESGAI--EPRYYDAIVSMVKEMGPYIilAPGLAMPHARPeEGVNRTA 78
Cdd:COG1762    1 MMLSDLLTPELILLDLEASSKEEAIEELAELLAEKGYVldKEEYLEALLEREELGSTGI--GPGIAIPHARP-EGVKKPG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033  79 FALVTLTTPVAFESEE-EPVSVLITLAG--SDSDQHMQGIMEITQVLEDSDpnsltgvDLEKIRRCQSAEEIYAVIDAAL 155
Cdd:COG1762   78 IAVARLKEPVDFGAMDgEPVDLVFLLAApeDDSEEHLKLLAELARLLSDEE-------FREKLLNAKSPEEILELLKEAE 150
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
6-151 1.11e-35

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 120.39  E-value: 1.11e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033    6 LIENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYIILapGLAMPHARPeEGVNRTAFALVTLT 85
Cdd:pfam00359   1 LLDKELIFLNLEAKSKEEAIEFLADKLVEAGYVEPAYLEAILEREKEGSTGIGN--GIAIPHARS-EAVKKPGIAVLTLK 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516417033   86 TPVAFESEE-EPVSVLITLAGSDSDQ-HMQGIMEITQVLEDSDpnsltgvDLEKIRRCQSAEEIYAVI 151
Cdd:pfam00359  78 EPVDFGSEDgKPVKLIFLLAAPDNEAsHLKILSQLARLLQDEE-------FVEKLLKAKDPEEILEIL 138
cmtB PRK09854
PTS mannitol transporter subunit IIA;
11-126 6.10e-26

PTS mannitol transporter subunit IIA;


Pssm-ID: 182114 [Multi-domain]  Cd Length: 147  Bit Score: 95.83  E-value: 6.10e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033  11 SVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYIILAPGLAMPHARPEEGVNRTAFALVTLTTPVAF 90
Cdd:PRK09854  11 SISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQAIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYF 90

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 516417033  91 ESEEEPVSVLITLAGSDSDQHMQGIMEITQVLEDSD 126
Cdd:PRK09854  91 PGNDEPIKLLIGLSAADADSHIGAIQALSELLCEEE 126
MtlA2 COG4668
Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and ...
 6-151 7.15e-26

Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism];


Pssm-ID: 443705 [Multi-domain]  Cd Length: 143  Bit Score: 95.61  E-value: 7.15e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   6 LIENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYiiLAPGLAMPHARPE--EGVNRTAFALVT 83
Cdd:COG4668    3 ILTKENIRLNASAANKEEAIRLAGQLLVEAGYVEPEYIDAMLEREAQVSTY--LGNGIAIPHGTNEakDLVLKTGISVLQ 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 516417033  84 LTTPVAFEsEEEPVSVLITLAGSdSDQHMQGIMEITQVLEDSDpnsltgvDLEKIRRCQSAEEIYAVI 151
Cdd:COG4668   81 FPDGVDWG-DGNTVYLVIGIAAK-SDEHLEILRQLARVLSDEE-------NVEKLAKATDAEEILALL 139
PRK09765 PRK09765
PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
 6-154 3.77e-12

PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional


Pssm-ID: 182066 [Multi-domain]  Cd Length: 631  Bit Score: 62.83  E-value: 3.77e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   6 LIENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPR--YYDAIvsMVKE-MGPyIILAPGLAMPHARpEEGVNRTAFALV 82
Cdd:PRK09765   6 LTHRDLLCLNARFTSREEAIHALAQRLAALGKISSTeqFLEEV--YRREsLGP-TALGEGLAVPHGK-TAAVKEAAFAVA 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516417033  83 TLTTPVAFES--EEEPVSVLITLAGSDSD---QHMQGIMEITQVLEDSDPnsltgvdLEKIRRCQSAEEIYAVIDAA 154
Cdd:PRK09765  82 TLSEPLQWEGvdGPEAVDLIFLLAIPPNEagtTHMQLLTALTTRLADDEI-------RARIQSATTPDELLSALDDK 151
PRK15083 PRK15083
PTS system mannitol-specific transporter subunit IICBA; Provisional
 7-124 5.14e-11

PTS system mannitol-specific transporter subunit IICBA; Provisional


Pssm-ID: 237905 [Multi-domain]  Cd Length: 639  Bit Score: 59.68  E-value: 5.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   7 IENRSVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYiiLAPGLAMPHARPE--EGVNRTAFALVTL 84
Cdd:PRK15083 497 LGAENIFLGLKAATKEEAIRFAGEQLVKGGYVEPEYVDAMLDREKLTSTY--LGESIAVPHGTVEakDRVLKTGVVFCQY 574

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 516417033  85 TTPVAFESEEEPVSVLITLAGSDSDQHMQGIMEITQVLED 124
Cdd:PRK15083 575 PEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDD 614
nitro_reg_IIA TIGR01419
PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of ...
 62-152 1.44e-08

PTS IIA-like nitrogen-regulatory protein PtsN; This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS]


Pssm-ID: 162350 [Multi-domain]  Cd Length: 145  Bit Score: 50.49  E-value: 1.44e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033   62 GLAMPHARpEEGVNRTAFALVTLTTPVAFES-EEEPVSVLITLAGSD--SDQHMQGIMEITQVLEDSdpnsltgvDLEKI 138
Cdd:TIGR01419  60 GIAIPHGR-LSGLKQPVGVFIRLDAPVDFDAlDGKPVDLLFALLVPEnaTAEHLEALSRIARKLSDK--------TICRR 130

                          90
                  ....*....|....
gi 516417033  139 RRCQSAEEIYAVID 152
Cdd:TIGR01419 131 LRAASAEEIYQILT 144
fruA TIGR00848
PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family ...
 2-126 1.72e-05

PTS system, fructose subfamily, IIA component; 4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273298 [Multi-domain]  Cd Length: 129  Bit Score: 41.88  E-value: 1.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033    2 LKESLIEnrsvkLNQTAQNWEEAIKIGTDMLVESGAIEPR--YYDAIVSMVKEMGPYIIlaPGLAMPHARpEEGVNRTAF 79
Cdd:TIGR00848   2 LNKDLIF-----LDQQFTSKEDVIKFLANKLLENGYISDTeeFLEDLLKREEEGTTGIG--DGVAIPHAK-SAAVKQPFV 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 516417033   80 ALVTLTTPVAFESEE-EPVSVLITLAGSDS---DQHMQGIMEITQVLEDSD 126
Cdd:TIGR00848  74 AIARLVKGVDWQSLDgKPVKLIFLIAVPKDeagNTHLKALSQLARLLLNDE 124
PRK11109 PRK11109
fused PTS fructose transporter subunit IIA/HPr protein;
72-138 1.99e-05

fused PTS fructose transporter subunit IIA/HPr protein;


Pssm-ID: 236849 [Multi-domain]  Cd Length: 375  Bit Score: 43.40  E-value: 1.99e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 516417033  72 EGVNRTAFALVTLTTPvaFESEEEPVSVLITLAGSDsDQHMQGIMEITQVLEDSDPNSLTGVDLEKI 138
Cdd:PRK11109 208 EGNLRSAVAVSRAANA--FEVDGEPVALLLTVAAAD-DQPLAVLKRLSDLLLAQKADRLLSADAATL 271
PRK11109 PRK11109
fused PTS fructose transporter subunit IIA/HPr protein;
12-151 2.15e-04

fused PTS fructose transporter subunit IIA/HPr protein;


Pssm-ID: 236849 [Multi-domain]  Cd Length: 375  Bit Score: 40.32  E-value: 2.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033  12 VKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSMVKEMGPYiiLAPGLAMPHARPE--EGVNRTAFALVTLTTPVA 89
Cdd:PRK11109   9 IHLGQQAGNKEEAIRQVAAALTQAGNVAEGYVDGMLAREQQTSTF--LGNGIAIPHGTTDtrDLVLKTGVQVFQFPQGVT 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 516417033  90 FeSEEEPVSVLITLAgSDSDQHMQGIMEITQVLEDSdpnsltGVDlEKIRRCQSAEEIYAVI 151
Cdd:PRK11109  87 W-GDGQTAYVAIGIA-AKSDEHLGLLRQLTHVLSDD------SVA-EQLKSATTAEELRALL 139
PRK10896 PRK10896
PTS IIA-like nitrogen regulatory protein PtsN;
43-151 4.65e-04

PTS IIA-like nitrogen regulatory protein PtsN;


Pssm-ID: 182818 [Multi-domain]  Cd Length: 154  Bit Score: 38.58  E-value: 4.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033  43 YDAIVSMVKeMGPYIIlAPGLAMPHARPEEGVNRTAFALVTLTTPVAFES-EEEPVSVLIT-LAGSDSDQ-HMQGIMEIT 119
Cdd:PRK10896  50 FEAILTREK-MGSTGI-GNGIAIPHGKLEEDTLRAVGVFVQLEQPIAFDAiDNQPVDLLFAlLVPADQCKtHLHTLSLVA 127

                         90       100       110
                 ....*....|....*....|....*....|..
gi 516417033 120 QVLEDSDPnsltgvdLEKIRRCQSAEEIYAVI 151
Cdd:PRK10896 128 KRLADKTI-------CRRLRAAQSDEELYQII 152
PRK13779 PRK13779
bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional
 11-145 4.17e-03

bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional


Pssm-ID: 237502 [Multi-domain]  Cd Length: 503  Bit Score: 36.39  E-value: 4.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516417033  11 SVKLNQTAQNWEEAIKIGTDMLVESGAIEPRYYDAIVSmvKEMGPYIILAPGLAMPHARPEEG--VNRTAFALVTLttPV 88
Cdd:PRK13779   8 NIHLNAQAINKQQAIEMAAAALEQAGNVENGYLQGMLA--RELQTSTFLGNGIAIPHGTLDTRhmVKNTGVQIFQF--PQ 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 516417033  89 AFESEEEPVSVLITLAGSDSDQHMQGIMEITQVLEDSDPNSL--TGVDLEKIRRCQSAE 145
Cdd:PRK13779  84 GIEWGEGNIAYVVIGIAARSDEHLSLLRQLTHVLSDEDTAAKlaTLTDVKEFRAILMGE 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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