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Conserved domains on  [gi|516288631|ref|WP_017691938|]
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ATP synthase F1 subunit gamma [Paenibacillus sp. PAMC 26794]

Protein Classification

FoF1 ATP synthase subunit gamma( domain architecture ID 10792582)

FoF1 ATP synthase subunit gamma is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

EC:  7.1.2.2
Gene Ontology:  GO:0045261|GO:0005524|GO:0046933|GO:0042777
PubMed:  25730883|30888962|25667968|18216260|8951091
SCOP:  4000503

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 1-287 2.01e-157

F0F1 ATP synthase subunit gamma; Validated


:

Pssm-ID: 235535  Cd Length: 284  Bit Score: 439.93  E-value: 2.01e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAkGMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTqGIQHPMLESRPVKRTAYL 80
Cdd:PRK05621   1 MA-SLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVEREVKRVGYI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  81 IITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHG 160
Cdd:PRK05621  79 VVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 161 FELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEvtVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASE 240
Cdd:PRK05621 159 YDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEE--EEEETSWDYEYEPDAEEILDALLPRYVESQIYQALLENKASE 236

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 516288631 241 LGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:PRK05621 237 QAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEA 283
 
Name Accession Description Interval E-value
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 1-287 2.01e-157

F0F1 ATP synthase subunit gamma; Validated


Pssm-ID: 235535  Cd Length: 284  Bit Score: 439.93  E-value: 2.01e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAkGMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTqGIQHPMLESRPVKRTAYL 80
Cdd:PRK05621   1 MA-SLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVEREVKRVGYI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  81 IITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHG 160
Cdd:PRK05621  79 VVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 161 FELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEvtVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASE 240
Cdd:PRK05621 159 YDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEE--EEEETSWDYEYEPDAEEILDALLPRYVESQIYQALLENKASE 236

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 516288631 241 LGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:PRK05621 237 QAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEA 283
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 1-287 2.82e-153

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 429.57  E-value: 2.82e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAkGMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYL 80
Cdd:COG0224    1 MA-SLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYAEKLREVLAALAAASPEYDHPLLEEREVKRVGLI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  81 IITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHG 160
Cdd:COG0224   80 VITSDRGLCGGFNSNVLKAAEELIKELQAEGKEVELIVVGRKGRDFFKRRGINVVAEFTGLSDKPSFEDAKEIAEELLDA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 161 FELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTAS-YEYEPSAEAVLEVLLPRYAETLIYGALLNGKAS 239
Cdd:COG0224  160 FLAGEIDEVYLVYNRFVSAITQEPVVEQLLPLDPEELEEAEWETRAdYIFEPSPEEILDALLPRYLESQIYQALLESAAS 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 516288631 240 ELGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:COG0224  240 EHAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGGAEA 287
ATP-synt pfam00231
ATP synthase;
5-287 2.60e-148

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 416.93  E-value: 2.60e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631    5 MREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIITS 84
Cdd:pfam00231   2 LKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPEDSHPLLERREVKKVGLIVITS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   85 DRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTD-LSDSPSFADIKSIAHEAVHGFEL 163
Cdd:pfam00231  82 DRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKGRDYFKKRGYEVILEFTGsLGDKPTFEEAAEIADELLDAFLA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  164 AEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELGA 243
Cdd:pfam00231 162 GEIDEVYLVYNRFVSAISQEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAA 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 516288631  244 KMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:pfam00231 242 RMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA 285
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 4-287 2.04e-134

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 381.64  E-value: 2.04e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631    4 GMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIIT 83
Cdd:TIGR01146   2 TLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNVDHPLLKSREVKKVGILVIT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   84 SDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHGFEL 163
Cdd:TIGR01146  82 SDRGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLDAFDA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  164 AEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELGA 243
Cdd:TIGR01146 162 GEFDELYIVYNKFVSSISQEPTVKQLLPLSAQGPDEGFKFSQDYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAA 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 516288631  244 KMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:TIGR01146 242 RMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASA 285
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 5-285 8.71e-130

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 369.98  E-value: 8.71e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   5 MREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIITS 84
Cdd:cd12151    3 LKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEVLQRLLSSLDDEDPPLLEKREVKKVLLIVITS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  85 DRGLAGGYNANVLRQVNQTLKERHNSQDdyELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHGFELA 164
Cdd:cd12151   83 DRGLCGGFNSNIIKAAEELIKEADGKEV--KLIVVGKKGRDYLKRRGYNIALPFSDIGDDPTYFEAASIIEELILDFLNG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 165 EFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTAS-YEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELGA 243
Cdd:cd12151  161 EIDEVYIIYNKFKSAISQEPVVEQLLPLDKEEEEEESEGSRSdYIFEPDPEEVLDALLPFYLASLLYRALLESLASEQAA 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 516288631 244 KMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGA 285
Cdd:cd12151  241 RMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
 
Name Accession Description Interval E-value
PRK05621 PRK05621
F0F1 ATP synthase subunit gamma; Validated
 1-287 2.01e-157

F0F1 ATP synthase subunit gamma; Validated


Pssm-ID: 235535  Cd Length: 284  Bit Score: 439.93  E-value: 2.01e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAkGMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTqGIQHPMLESRPVKRTAYL 80
Cdd:PRK05621   1 MA-SLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVEREVKRVGYI 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  81 IITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHG 160
Cdd:PRK05621  79 VVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 161 FELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEvtVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASE 240
Cdd:PRK05621 159 YDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEE--EEEETSWDYEYEPDAEEILDALLPRYVESQIYQALLENKASE 236

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 516288631 241 LGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:PRK05621 237 QAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGAEA 283
AtpG COG0224
FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP ...
 1-287 2.82e-153

FoF1-type ATP synthase, gamma subunit [Energy production and conversion]; FoF1-type ATP synthase, gamma subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439994  Cd Length: 288  Bit Score: 429.57  E-value: 2.82e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAkGMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYL 80
Cdd:COG0224    1 MA-SLKEIRRRIKSVKSTQKITKAMKMVAASKLRKAQERAEAARPYAEKLREVLAALAAASPEYDHPLLEEREVKRVGLI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  81 IITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHG 160
Cdd:COG0224   80 VITSDRGLCGGFNSNVLKAAEELIKELQAEGKEVELIVVGRKGRDFFKRRGINVVAEFTGLSDKPSFEDAKEIAEELLDA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 161 FELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTAS-YEYEPSAEAVLEVLLPRYAETLIYGALLNGKAS 239
Cdd:COG0224  160 FLAGEIDEVYLVYNRFVSAITQEPVVEQLLPLDPEELEEAEWETRAdYIFEPSPEEILDALLPRYLESQIYQALLESAAS 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 516288631 240 ELGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:COG0224  240 EHAARMTAMKNATDNAGELIDDLTLEYNRARQAAITQELSEIVGGAEA 287
ATP-synt pfam00231
ATP synthase;
5-287 2.60e-148

ATP synthase;


Pssm-ID: 459722  Cd Length: 285  Bit Score: 416.93  E-value: 2.60e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631    5 MREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIITS 84
Cdd:pfam00231   2 LKEIKRRIKSVKSTQKITKAMKMVAAAKLRKAQEALEAARPYAEKLQEVLADLAAASPEDSHPLLERREVKKVGLIVITS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   85 DRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTD-LSDSPSFADIKSIAHEAVHGFEL 163
Cdd:pfam00231  82 DRGLCGGFNSNVIKAARALIEELLAEGKEVKLIVVGRKGRDYFKKRGYEVILEFTGsLGDKPTFEEAAEIADELLDAFLA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  164 AEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELGA 243
Cdd:pfam00231 162 GEIDEVYLVYNRFVSAISQEPTVEQLLPLDPEEEEEEEESLADYEFEPSAEEVLDALLPRYLESQIYGALLESAASEQAA 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 516288631  244 KMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:pfam00231 242 RMTAMDNATDNAGELIDKLTLQYNRARQAAITQELIEIVSGAEA 285
ATPsyn_F1gamma TIGR01146
ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in ...
 4-287 2.04e-134

ATP synthase, F1 gamma subunit; This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273469  Cd Length: 286  Bit Score: 381.64  E-value: 2.04e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631    4 GMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIIT 83
Cdd:TIGR01146   2 TLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLLNVDHPLLKSREVKKVGILVIT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   84 SDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHGFEL 163
Cdd:TIGR01146  82 SDRGLCGGYNSNVLKRVRARAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLDAFDA 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  164 AEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELGA 243
Cdd:TIGR01146 162 GEFDELYIVYNKFVSSISQEPTVKQLLPLSAQGPDEGFKFSQDYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAA 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 516288631  244 KMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:TIGR01146 242 RMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGASA 285
F1-ATPase_gamma cd12151
mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, ...
 5-285 8.71e-130

mitochondrial ATP synthase gamma subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain of F-ATPases is composed of alpha, beta, gamma, delta, and epsilon (not present in bacteria) subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain.


Pssm-ID: 213394  Cd Length: 282  Bit Score: 369.98  E-value: 8.71e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   5 MREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIITS 84
Cdd:cd12151    3 LKEIKRRIKSVKNTQKITKAMKMVAAAKLRKAQRALEAARPYAEKLEEVLQRLLSSLDDEDPPLLEKREVKKVLLIVITS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  85 DRGLAGGYNANVLRQVNQTLKERHNSQDdyELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHGFELA 164
Cdd:cd12151   83 DRGLCGGFNSNIIKAAEELIKEADGKEV--KLIVVGKKGRDYLKRRGYNIALPFSDIGDDPTYFEAASIIEELILDFLNG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 165 EFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTAS-YEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELGA 243
Cdd:cd12151  161 EIDEVYIIYNKFKSAISQEPVVEQLLPLDKEEEEEESEGSRSdYIFEPDPEEVLDALLPFYLASLLYRALLESLASEQAA 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 516288631 244 KMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGA 285
Cdd:cd12151  241 RMTAMDNATDNAGELIDKLTLEYNRARQAAITQELIEIVSGA 282
PRK13423 PRK13423
F0F1 ATP synthase subunit gamma; Provisional
 1-290 2.51e-111

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237384  Cd Length: 288  Bit Score: 323.16  E-value: 2.51e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAKgMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYL 80
Cdd:PRK13423   1 MAS-LKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGEDAHPLLVPREVKKALLV 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  81 IITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHG 160
Cdd:PRK13423  80 VVTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGLIIRKNYGGVVANLTYETAALLAQELIEG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 161 FELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEvTVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASE 240
Cdd:PRK13423 160 YLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPE-AADDEYLPEYIYEPSRDALLAELLPKHVEVQIYRALLESVASE 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 516288631 241 LGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANAAQG 290
Cdd:PRK13423 239 HGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGAEALKG 288
PRK14111 PRK14111
F0F1 ATP synthase subunit gamma; Provisional
 6-287 3.08e-100

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184515  Cd Length: 290  Bit Score: 295.17  E-value: 3.08e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   6 REIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQ--HPMLESRP-VKRTAYLII 82
Cdd:PRK14111   5 REIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAArvGPLLEKRPtVKRVALILV 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  83 TSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHGFE 162
Cdd:PRK14111  85 TPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATSAINGFQ 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 163 LAEFDELYICYNRFVNALTQIPTVEKLLPMETPEvtVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELG 242
Cdd:PRK14111 165 SGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPE--ISTTTVVDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHS 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 516288631 243 AKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:PRK14111 243 ARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASGAAA 287
PRK13424 PRK13424
F0F1 ATP synthase subunit gamma; Provisional
 5-290 1.39e-84

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172047  Cd Length: 291  Bit Score: 255.44  E-value: 1.39e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   5 MREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRT-AYLIIT 83
Cdd:PRK13424   4 LKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRADSSAHPLLEVREEIKTcGIVLIT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  84 SDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHGFEL 163
Cdd:PRK13424  84 SDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYADQMTSFDFQLANSIGLEVIDGYLT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 164 AEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAE-GPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASELG 242
Cdd:PRK13424 164 GELDEVVLVYGEFVSMARQLPITLQILPIAPEEAEEEEaGASSEYIYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHA 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 516288631 243 AKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANAAQG 290
Cdd:PRK13424 244 ARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGGAEALKG 291
PRK13427 PRK13427
F0F1 ATP synthase subunit gamma; Provisional
 1-289 8.18e-77

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 172049  Cd Length: 289  Bit Score: 235.61  E-value: 8.18e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAKGmREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLEsRP--VKRTA 78
Cdd:PRK13427   1 MATP-REIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEGVVHSPYLR-RPekIRTVA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  79 YLIITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAV 158
Cdd:PRK13427  79 LLIITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLFM 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 159 HGFELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKA 238
Cdd:PRK13427 159 ERFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTAAAEGSVQDDVVYEPSPEAILESLLPLVVKTAFLKAILEANA 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 516288631 239 SELGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANAAQ 289
Cdd:PRK13427 239 SEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGGADALN 289
PRK13425 PRK13425
F0F1 ATP synthase subunit gamma; Provisional
 5-290 5.17e-75

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 139564  Cd Length: 291  Bit Score: 231.24  E-value: 5.17e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   5 MREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRP-VKRTAYLIIT 83
Cdd:PRK13425   4 LKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVDTSLNPLLSPRSeVNKVLVILIT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  84 SDRGLAGGYNANVLRQVNQTLKERH---NSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHG 160
Cdd:PRK13425  84 SDRGLCGAFNTNIIKLAQKVIHEDYaalHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAETASGM 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 161 FELAEFDELYICYNRFVNALTQIPTVEKLLPMeTPEVTVAEGpTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASE 240
Cdd:PRK13425 164 YLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPI-TPEKPGAEG-GSDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAE 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 516288631 241 LGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANAAQG 290
Cdd:PRK13425 242 QAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADALQG 291
PRK13426 PRK13426
F0F1 ATP synthase subunit gamma; Provisional
 5-287 2.99e-70

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 237385  Cd Length: 291  Bit Score: 218.88  E-value: 2.99e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   5 MREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIITS 84
Cdd:PRK13426   4 LKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADLDVESPFTVERPVKRVAIVVFSS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  85 DRGLAGGYNANVLRQVNQTLKE-RHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEAVHGFEL 163
Cdd:PRK13426  84 NTSLCGGFNANIIKLLLQTIGEyRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLMELFLE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 164 AEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAE---GPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKASE 240
Cdd:PRK13426 164 GEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQEKNAEhagGVANDYIIEPSADTVLNDLIPKLLSLKIYTALLDSNASE 243

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 516288631 241 LGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:PRK13426 244 HAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGGSMA 290
PRK14110 PRK14110
F0F1 ATP synthase subunit gamma; Provisional
 1-287 8.74e-65

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184514  Cd Length: 291  Bit Score: 205.00  E-value: 8.74e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   1 MAK-GMREIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAY 79
Cdd:PRK14110   1 MAKlSPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHIDRESHPLLERREEKNVDL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  80 LIITSDRGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDL-SDSPSFADIKSIAHEAV 158
Cdd:PRK14110  81 VIITADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVfRKEINFSVVKEVGGILA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 159 HGFELAEFDELYICYNRFVNALTQIPTVEKLLPMETPEVTVAEGPTASYEYEPSAEAVLEVLLPRYAETLIYGALLNGKA 238
Cdd:PRK14110 161 SRYIEEETDAVYLINNEMITRATYKPKVRKFLPFEVEAQEKKLDELSVYNIEVSEEEFLDKLLQLYLNYQLYRALVESNA 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 516288631 239 SELGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:PRK14110 241 AEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAEA 289
PRK13422 PRK13422
F0F1 ATP synthase subunit gamma; Provisional
 6-287 8.52e-50

F0F1 ATP synthase subunit gamma; Provisional


Pssm-ID: 184046  Cd Length: 298  Bit Score: 166.76  E-value: 8.52e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631   6 REIKRQIKSVQSTKQITKAMEMVAAAKLRKAQEKAEAARPYSEKLKEVVASIASSTQGIQHPMLESRPVKRTAYLIITSD 85
Cdd:PRK13422   5 REIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAASIDYPNPYLFDRDVKRVGYIVTSTD 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631  86 RGLAGGYNANVLRQVNQTLKERHNSQDDYELFVIGRKGRDYFRRREMAMASTTTDLSDSPSFADIKSIAHEA---VHGFE 162
Cdd:PRK13422  85 RGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVkvmLDKFT 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 516288631 163 LAEFDELYICYNRFVNALTQIPTVEKLLPME---TPEVTVAEGPTAS-----YEYEPSAEAVLEVLLPRYAETLIYGALL 234
Cdd:PRK13422 165 AGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQdifSAEEIKANKEKATkghwdYIYERDIEEVLNALCIRYIEAQVRGAIL 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 516288631 235 NGKASELGAKMTAMGNATKNASKMINELSLTYNRARQAAITQEITEIVAGANA 287
Cdd:PRK13422 245 ENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAA 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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