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Conserved domains on  [gi|515938399|ref|WP_017368982|]
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SFCGS family glycine-rich protein [Lactococcus formosensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gly_rich_SFCGS super family cl26041
Glycine-rich SFCGS; This family of proteins is found in bacteria. Proteins in this family are ...
 2-114 2.18e-57

Glycine-rich SFCGS; This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length. There are a number of highly conserved motifs including an SFCGSGGAGA motif.


The actual alignment was detected with superfamily member pfam14272:

Pssm-ID: 421256  Cd Length: 113  Bit Score: 173.06  E-value: 2.18e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515938399    2 VKIVIGDRMGKGQNIAKGIEAAGGEALVIPGMAADMRLGDMMKKEGADMGLSFCGSGGAGALTAATKYGYTERHGMRSIQ 81
Cdd:pfam14272   1 VKVVIGDRLGKGQKVAKGVEAAGGKAIVIPGMGADMKLGDVMKSENADLGISFCGSGGAGAITAQTKYGYKAEYGMRSVE 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 515938399   82 EGVTAIEEGIQVLGFGFMDTEELGMALTEAYKK 114
Cdd:pfam14272  81 EGVTAINEGYTVLGFGFMDTEELGRRLVEAYVK 113
 
Name Accession Description Interval E-value
Gly_rich_SFCGS pfam14272
Glycine-rich SFCGS; This family of proteins is found in bacteria. Proteins in this family are ...
 2-114 2.18e-57

Glycine-rich SFCGS; This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length. There are a number of highly conserved motifs including an SFCGSGGAGA motif.


Pssm-ID: 405032  Cd Length: 113  Bit Score: 173.06  E-value: 2.18e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515938399    2 VKIVIGDRMGKGQNIAKGIEAAGGEALVIPGMAADMRLGDMMKKEGADMGLSFCGSGGAGALTAATKYGYTERHGMRSIQ 81
Cdd:pfam14272   1 VKVVIGDRLGKGQKVAKGVEAAGGKAIVIPGMGADMKLGDVMKSENADLGISFCGSGGAGAITAQTKYGYKAEYGMRSVE 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 515938399   82 EGVTAIEEGIQVLGFGFMDTEELGMALTEAYKK 114
Cdd:pfam14272  81 EGVTAINEGYTVLGFGFMDTEELGRRLVEAYVK 113
EF_0830 TIGR03577
conserved hypothetical protein EF_0830/AHA_3911; Members of this family of small (about 120 ...
 2-116 8.85e-52

conserved hypothetical protein EF_0830/AHA_3911; Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved]


Pssm-ID: 132616  Cd Length: 115  Bit Score: 158.83  E-value: 8.85e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515938399    2 VKIVIGDRMGKGQNIAKGIEAAGGEALVIPGMAADMRLGDMMKKEGADMGLSFCGSGGAGALTAATKYGYTERHGMRSIQ 81
Cdd:TIGR03577   1 ITVVIGDRLGKGQKVAKGVEAAGGRAVVIPGMAADMKLGDVMKQENADLGISFCGSGGAGAITAQTKYGYKARYGMRSVE 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 515938399   82 EGVTAIEEGIQVLGFGFMDTEELGMALTEAYKKKH 116
Cdd:TIGR03577  81 EGVTAINEGKNVLGFGFMDKEELGKRLTEAFLKKH 115
 
Name Accession Description Interval E-value
Gly_rich_SFCGS pfam14272
Glycine-rich SFCGS; This family of proteins is found in bacteria. Proteins in this family are ...
 2-114 2.18e-57

Glycine-rich SFCGS; This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length. There are a number of highly conserved motifs including an SFCGSGGAGA motif.


Pssm-ID: 405032  Cd Length: 113  Bit Score: 173.06  E-value: 2.18e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515938399    2 VKIVIGDRMGKGQNIAKGIEAAGGEALVIPGMAADMRLGDMMKKEGADMGLSFCGSGGAGALTAATKYGYTERHGMRSIQ 81
Cdd:pfam14272   1 VKVVIGDRLGKGQKVAKGVEAAGGKAIVIPGMGADMKLGDVMKSENADLGISFCGSGGAGAITAQTKYGYKAEYGMRSVE 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 515938399   82 EGVTAIEEGIQVLGFGFMDTEELGMALTEAYKK 114
Cdd:pfam14272  81 EGVTAINEGYTVLGFGFMDTEELGRRLVEAYVK 113
EF_0830 TIGR03577
conserved hypothetical protein EF_0830/AHA_3911; Members of this family of small (about 120 ...
 2-116 8.85e-52

conserved hypothetical protein EF_0830/AHA_3911; Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved]


Pssm-ID: 132616  Cd Length: 115  Bit Score: 158.83  E-value: 8.85e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515938399    2 VKIVIGDRMGKGQNIAKGIEAAGGEALVIPGMAADMRLGDMMKKEGADMGLSFCGSGGAGALTAATKYGYTERHGMRSIQ 81
Cdd:TIGR03577   1 ITVVIGDRLGKGQKVAKGVEAAGGRAVVIPGMAADMKLGDVMKQENADLGISFCGSGGAGAITAQTKYGYKARYGMRSVE 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 515938399   82 EGVTAIEEGIQVLGFGFMDTEELGMALTEAYKKKH 116
Cdd:TIGR03577  81 EGVTAINEGKNVLGFGFMDKEELGKRLTEAFLKKH 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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