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Conserved domains on  [gi|512739951|ref|WP_016497433|]
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MULTISPECIES: ABC-type transport auxiliary lipoprotein family protein [Pseudomonas]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 20-195 3.78e-57

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 179.42  E-value: 3.78e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951  20 CSILPKTEPFDLYRLPVNQPSRTAA-PLDWSLRLNKPLASEVLAGPRIAVIPQGDVVSSYKGARWSDAAPVLLRNRLLDG 98
Cdd:COG3218   22 CSSLPAPPPPTLYDLTPPLPAAAAAgPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWADPPPRLLQDLLVEA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951  99 FQRDGQVQRLSADDSNLQADYELAGELQAFQSEYRPGGAvEVVIRYDARLVQGRTQRILASKRFEIRQPLADKQVSAVVA 178
Cdd:COG3218  102 LEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRRFEARVPAASADAAGVVA 180

                        170
                 ....*....|....*..
gi 512739951 179 GFGQASDQLVGQVVGWT 195
Cdd:COG3218  181 ALNQALDQLLAEIVAWL 197
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 20-195 3.78e-57

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 179.42  E-value: 3.78e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951  20 CSILPKTEPFDLYRLPVNQPSRTAA-PLDWSLRLNKPLASEVLAGPRIAVIPQGDVVSSYKGARWSDAAPVLLRNRLLDG 98
Cdd:COG3218   22 CSSLPAPPPPTLYDLTPPLPAAAAAgPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWADPPPRLLQDLLVEA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951  99 FQRDGQVQRLSADDSNLQADYELAGELQAFQSEYRPGGAvEVVIRYDARLVQGRTQRILASKRFEIRQPLADKQVSAVVA 178
Cdd:COG3218  102 LEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRRFEARVPAASADAAGVVA 180

                        170
                 ....*....|....*..
gi 512739951 179 GFGQASDQLVGQVVGWT 195
Cdd:COG3218  181 ALNQALDQLLAEIVAWL 197
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 35-191 2.48e-17

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 75.44  E-value: 2.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951   35 PVNQPSRTAAPLDWSLRLNKPLASEVLAGPRIAVIPQGDVVSSYKGARWSDAAPVLLRNRLLDGFQRDGQVQRLSA--DD 112
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAfpWP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512739951  113 SNLQADYELAGELQAFQSeyRPGGAVEVVIRYdaRLVQGRTQRILASKRFEIRQPLADKQVSAVVAGFGQASDQLVGQV 191
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDG--RPGGNAVLEARW--TLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 20-195 3.78e-57

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 179.42  E-value: 3.78e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951  20 CSILPKTEPFDLYRLPVNQPSRTAA-PLDWSLRLNKPLASEVLAGPRIAVIPQGDVVSSYKGARWSDAAPVLLRNRLLDG 98
Cdd:COG3218   22 CSSLPAPPPPTLYDLTPPLPAAAAAgPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYYAGARWADPPPRLLQDLLVEA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951  99 FQRDGQVQRLSADDSNLQADYELAGELQAFQSEYRPGGAvEVVIRYDARLVQGRTQRILASKRFEIRQPLADKQVSAVVA 178
Cdd:COG3218  102 LEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAP-RAVVELRARLVDDRDGRVVASRRFEARVPAASADAAGVVA 180

                        170
                 ....*....|....*..
gi 512739951 179 GFGQASDQLVGQVVGWT 195
Cdd:COG3218  181 ALNQALDQLLAEIVAWL 197
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 35-191 2.48e-17

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 75.44  E-value: 2.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951   35 PVNQPSRTAAPLDWSLRLNKPLASEVLAGPRIAVIPQGDVVSSYKGARWSDAAPVLLRNRLLDGFQRDGQVQRLSA--DD 112
Cdd:pfam03886   1 PAPAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLSRRLPSRRVAAfpWP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512739951  113 SNLQADYELAGELQAFQSeyRPGGAVEVVIRYdaRLVQGRTQRILASKRFEIRQPLADKQVSAVVAGFGQASDQLVGQV 191
Cdd:pfam03886  81 LGGTPDYRLQVDVRRFDG--RPGGNAVLEARW--TLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 1-191 3.74e-08

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 51.53  E-value: 3.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951   1 MKPSMRLLALAAALSLASACSILPKTepfDLYRL-PVNQPSRTAAPLD-WSLRLNKPLASEVLAGPRIaVIPQGDV-VSS 77
Cdd:COG3009    1 MKRPLRLLLLLLLALLLAACASSPPT---RYYTLpPPAAPAAAAAAAAaPVIEVGPVSLPDYLDRPQI-VYRTGDGrLVI 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512739951  78 YKGARWSDAAPVLLRNRLLDGFQRDGQVQRLSA--DDSNLQADYELAGELQAFQSeyRPGGAVEVVIRYdaRLVQGRTQR 155
Cdd:COG3009   77 AENHRWAEPLSDQLTRALAANLAARLPGARVAAqpWPLAGRPDYRLRVDVTRFDG--RPDGQAVLSAQW--SLRRGGGGG 152

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 512739951 156 ILASKRFEIRQPLADKQVSAVVAGFGQASDQLVGQV 191
Cdd:COG3009  153 PLLSRRFSIEEPLAGDGYDALVAALSQALAQLADQI 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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